AT1G32430

Weak chloroplast movement under blue light

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Reverse (-)
11704932 .. 11706357
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G32430.1

Sequence Viewer

Length: 1143 bp
ATGGCGAATAAGGAGAAGCTTCCATGGGATTTGGAGGAAGAGATCCTATCTCGTGTCCCTCCTACTTCTCTTGACCGATTCAAAACCGTTTGCAAACGATGGAACGCTCTCTTCAACGACAAGACGTTCATCAACAATCACAAGATGACGTTTCAATTCGTTTTATCAACTAGATCCAAGATTTATTCAGTAAGCGTCAATCCCAAGGTAGAGGTGCGTGAGTTAACCTTAAATAATCCCGGTTTAAAAGCTCAAAGACATAAAAATTTGTTTGCTACCAGTGGATTATTGCTTTGTGACGTGGGTAATGGAGCCGTGGTTTGGAACCCTTGGTTAAAACAGTCTAGATGCATCAAGCTCGAGGTTAACGAACCTAGTTTGGATTTTCTTGGCATAGGTTATGATAATAATAAGAGAGTTGAGGAAATTGTTTACAAAACACTTTCGGTTTATATGAAAGACTTAGGCTCTCAATATACGTGGAAAATCCATGACTTTGCCTCCGATACGTGGATAGACCAAGAGATTGAAAAGACAAAATATAGTAGACGAATTACTGAGGGAAGTGTTACCATTCGCTTAACAAACTTAAGTGTGGTATCGTTGAATGGAAAATTCTTCAAGTTTTGTGATCTACCAAGCGGGAAGAACCGTCGTCGTGATGCTCTTGCCCTTAGGGTTTTTAGGGAAGATAGGTTTTCGTTGTTGAGGCAGTGTCATGTAACAAAGAAGATTAAGATTTGGGTGACAAAGAACAAGATTGATAATCGGTATGGTGGGGATGTGAAATGGATGAGTTTCATGGAGGTGTCAATTCCTACCATGCCGGATTTAGAACATCCCAAATTTAACTCTCAGCCAAGTTACTTCATTGATGATAAAAGGCTCGTCATTTGTTCTTGTGATGAAACTGGTCGGGCTTGGATCTATGTTGTGGGGGGAAATAAGTTGGTCAGTAAAACCCAATTGGATTCTGTGGTTGATCCTTGGCCTTTGCATTGTACCTATTTTCCAAGTTTGGTCCTGGTTCCTGGAGGTCAAAGAGAAGAAGCAGAGTTACAAGAAGCTAAAAATTTACATGTCACGACTGAGTTATACGTTCCAGGAAAGACGAAAAGTTCGATAAAATTACATTACGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PPR_2 WEMBL

Protein Analysis

380

Amino Acids

43.92

Weight (kDa)

9.29

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 43 3.5e-07 F-box domain
FBA_1 PF07734 53 - 186 2.1e-23 F-box associated beta propeller domain
FBA_1 PF07734 205 - 341 4.2e-35 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 547
AciI CCGC 1 cut(s) 642
AclWI GGATC 4 cut(s) 37, 168, 932, 977
AcsI RAATTY 4 cut(s) 265, 614, 845, 1072
AfaI GTAC 1 cut(s) 1003
AfiI CCNNNNNNNGG 2 cut(s) 321, 510
AflII CTTAAG 1 cut(s) 589
AflIII ACRYGT 1 cut(s) 1078
AgsI TTSAA 6 cut(s) 82, 115, 155, 530, 607, 622
AjiI CACGTC 1 cut(s) 301
AjnI CCWGG 3 cut(s) 1023, 1030, 1102
AluBI AGCT 4 cut(s) 19, 251, 358, 1067
AluI AGCT 4 cut(s) 19, 251, 358, 1067
AlwI GGATC 4 cut(s) 37, 168, 932, 977
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 1 cut(s) 989
ApoI RAATTY 4 cut(s) 265, 614, 845, 1072
ArsI GACNNNNNNTTYG 2 cut(s) 1102, 1134
AspS9I GGNCC 1 cut(s) 1021
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 757
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 1 cut(s) 1021
AxyI CCTNAGG 1 cut(s) 674
BarI GAAGNNNNNNTAC 2 cut(s) 1041, 1073
BauI CACGAG 1 cut(s) 51
BccI CCATC 1 cut(s) 93
BceAI ACGGC 1 cut(s) 299
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BciT130I CCWGG 3 cut(s) 1025, 1032, 1104
BcnI CCSGG 1 cut(s) 240
BfaI CTAG 3 cut(s) 171, 345, 375
BfrI CTTAAG 1 cut(s) 589
Bme1390I CCNGG 4 cut(s) 240, 1025, 1032, 1104
Bme18I GGWCC 1 cut(s) 1021
BmeT110I CYCGRG 1 cut(s) 359
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 1021
BmiI GGNNCC 3 cut(s) 313, 326, 1029
BmrFI CCNGG 4 cut(s) 240, 1025, 1032, 1104
BmsI GCATC 3 cut(s) 338, 360, 652
BpmI CTGGAG 1 cut(s) 1053
BpuMI CCSGG 1 cut(s) 240
BsaAI YACGTR 2 cut(s) 480, 510
BsaJI CCNNGG 5 cut(s) 23, 204, 315, 329, 986
BsaXI ACNNNNNCTCC 4 cut(s) 303, 333, 485, 515
Bsc4I CCNNNNNNNGG 2 cut(s) 321, 510
Bse1I ACTGG 2 cut(s) 279, 916
Bse21I CCTNAGG 1 cut(s) 674
BseBI CCWGG 3 cut(s) 1025, 1032, 1104
BseDI CCNNGG 5 cut(s) 23, 204, 315, 329, 986
BseGI GGATG 3 cut(s) 787, 798, 838
BseLI CCNNNNNNNGG 2 cut(s) 321, 510
BseMII CTCAG 3 cut(s) 549, 869, 1080
BseNI ACTGG 2 cut(s) 279, 916
BshFI GGCC 1 cut(s) 991
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 2 cut(s) 240, 827
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 2 cut(s) 321, 510
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 1 cut(s) 991
BsoBI CYCGRG 1 cut(s) 359
Bsp143I GATC 5 cut(s) 42, 173, 631, 924, 982
Bsp19I CCATGG 1 cut(s) 23
BspACI CCGC 1 cut(s) 642
BspANI GGCC 1 cut(s) 991
BspCNI CTCAG 3 cut(s) 550, 868, 1081
BspLI GGNNCC 3 cut(s) 313, 326, 1029
BspPI GGATC 4 cut(s) 37, 168, 932, 977
BspTI CTTAAG 1 cut(s) 589
BsrI ACTGG 2 cut(s) 279, 916
BssECI CCNNGG 5 cut(s) 23, 204, 315, 329, 986
BssMI GATC 5 cut(s) 42, 173, 631, 924, 982
BssSI CACGAG 1 cut(s) 51
BssT1I CCWWGG 4 cut(s) 23, 204, 329, 986
Bst2BI CACGAG 1 cut(s) 51
Bst2UI CCWGG 3 cut(s) 1025, 1032, 1104
Bst4CI ACNGT 4 cut(s) 88, 342, 653, 1139
Bst6I CTCTTC 2 cut(s) 33, 116
BstAFI CTTAAG 1 cut(s) 589
BstBAI YACGTR 2 cut(s) 480, 510
BstDEI CTNAG 5 cut(s) 463, 558, 674, 855, 1089
BstDSI CCRYGG 2 cut(s) 23, 315
BstF5I GGATG 3 cut(s) 787, 798, 838
BstKTI GATC 5 cut(s) 45, 176, 634, 927, 985
BstMBI GATC 5 cut(s) 42, 173, 631, 924, 982
BstNI CCWGG 3 cut(s) 1025, 1032, 1104
BstNSI RCATGY 1 cut(s) 1082
BstSCI CCNGG 4 cut(s) 238, 1023, 1030, 1102
BstX2I RGATCY 3 cut(s) 42, 173, 924
BstYI RGATCY 3 cut(s) 42, 173, 924
Bsu36I CCTNAGG 1 cut(s) 674
BsuRI GGCC 1 cut(s) 991
BtgI CCRYGG 2 cut(s) 23, 315
BtrI CACGTC 1 cut(s) 301
BtsCI GGATG 3 cut(s) 787, 798, 838
BtsI GCAGTG 1 cut(s) 719
BtsIMutI CAGTG 2 cut(s) 286, 719
Cfr13I GGNCC 1 cut(s) 1021
CseI GACGC 1 cut(s) 184
Csp6I GTAC 1 cut(s) 1002
CspCI CAANNNNNGTGG 2 cut(s) 461, 496
CviAII CATG 6 cut(s) 24, 491, 719, 802, 823, 1079
CviQI GTAC 1 cut(s) 1002
DdeI CTNAG 5 cut(s) 463, 558, 674, 855, 1089
DpnI GATC 5 cut(s) 44, 175, 633, 926, 984
DpnII GATC 5 cut(s) 42, 173, 631, 924, 982
DraI TTTAAA 1 cut(s) 246
Eam1104I CTCTTC 2 cut(s) 33, 116
EarI CTCTTC 2 cut(s) 33, 116
Eco130I CCWWGG 4 cut(s) 23, 204, 329, 986
Eco47I GGWCC 1 cut(s) 1021
Eco81I CCTNAGG 1 cut(s) 674
Eco88I CYCGRG 1 cut(s) 359
EcoRII CCWGG 3 cut(s) 1023, 1030, 1102
EcoT14I CCWWGG 4 cut(s) 23, 204, 329, 986
EcoT22I ATGCAT 1 cut(s) 353
ErhI CCWWGG 4 cut(s) 23, 204, 329, 986
FaeI CATG 6 cut(s) 27, 494, 722, 805, 826, 1082
FaqI GGGAC 1 cut(s) 41
FatI CATG 6 cut(s) 23, 490, 718, 801, 822, 1078
FauI CCCGC 1 cut(s) 635
FblI GTMKAC 1 cut(s) 547
FokI GGATG 3 cut(s) 794, 805, 825
FspBI CTAG 3 cut(s) 171, 345, 375
GsuI CTGGAG 1 cut(s) 1053
HaeIII GGCC 1 cut(s) 991
HapII CCGG 2 cut(s) 240, 827
HgaI GACGC 1 cut(s) 184
Hin1II CATG 6 cut(s) 27, 494, 722, 805, 826, 1082
HincII GTYRAC 2 cut(s) 225, 367
HindII GTYRAC 2 cut(s) 225, 367
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 2 cut(s) 78, 971
HpaI GTTAAC 2 cut(s) 225, 367
HpaII CCGG 2 cut(s) 240, 827
HphI GGTGA 1 cut(s) 757
Hpy166II GTNNAC 4 cut(s) 225, 367, 433, 548
Hpy188I TCNGA 1 cut(s) 505
Hpy188III TCNNGA 4 cut(s) 71, 345, 659, 1084
Hpy8I GTNNAC 4 cut(s) 225, 367, 433, 548
Hpy99I CGWCG 2 cut(s) 657, 660
HpyCH4III ACNGT 4 cut(s) 88, 342, 653, 1139
HpyCH4IV ACGT 6 cut(s) 125, 149, 300, 479, 509, 1098
HpyCH4V TGCA 3 cut(s) 93, 351, 997
HpyF3I CTNAG 5 cut(s) 463, 558, 674, 855, 1089
HpySE526I ACGT 6 cut(s) 125, 149, 300, 479, 509, 1098
Hsp92II CATG 6 cut(s) 27, 494, 722, 805, 826, 1082
KspAI GTTAAC 2 cut(s) 225, 367
Kzo9I GATC 5 cut(s) 42, 173, 631, 924, 982
LmnI GCTCC 1 cut(s) 311
LweI GCATC 3 cut(s) 338, 360, 652
MaeI CTAG 3 cut(s) 171, 345, 375
MaeII ACGT 6 cut(s) 125, 149, 300, 479, 509, 1098
MaeIII GTNAC 7 cut(s) 296, 568, 721, 745, 863, 1056, 1081
MalI GATC 5 cut(s) 44, 175, 633, 926, 984
MboI GATC 5 cut(s) 42, 173, 631, 924, 982
MboII GAAGA 7 cut(s) 50, 103, 610, 658, 701, 742, 1058
MfeI CAATTG 1 cut(s) 965
MflI RGATCY 3 cut(s) 42, 173, 924
Mph1103I ATGCAT 1 cut(s) 353
MseI TTAA 9 cut(s) 224, 230, 245, 335, 366, 581, 590, 735, 849
MslI CAYNNNNRTG 1 cut(s) 806
MspCI CTTAAG 1 cut(s) 589
MspI CCGG 2 cut(s) 240, 827
MspR9I CCNGG 4 cut(s) 240, 1025, 1032, 1104
MunI CAATTG 1 cut(s) 965
MvaI CCWGG 3 cut(s) 1025, 1032, 1104
NciI CCSGG 1 cut(s) 240
NcoI CCATGG 1 cut(s) 23
NdeII GATC 5 cut(s) 42, 173, 631, 924, 982
NlaIII CATG 6 cut(s) 27, 494, 722, 805, 826, 1082
NlaIV GGNNCC 3 cut(s) 313, 326, 1029
NmuCI GTSAC 3 cut(s) 296, 745, 1081
NsiI ATGCAT 1 cut(s) 353
NspI RCATGY 1 cut(s) 1082
PaeR7I CTCGAG 1 cut(s) 359
PciI ACATGT 1 cut(s) 1078
PcsI WCGNNNNNNNCGW 2 cut(s) 366, 1118
PfeI GAWTC 2 cut(s) 78, 971
PfoI TCCNGGA 2 cut(s) 1030, 1102
Ppu21I YACGTR 2 cut(s) 480, 510
PscI ACATGT 1 cut(s) 1078
Psp6I CCWGG 3 cut(s) 1023, 1030, 1102
PspGI CCWGG 3 cut(s) 1023, 1030, 1102
PspN4I GGNNCC 3 cut(s) 313, 326, 1029
PspPI GGNCC 1 cut(s) 1021
PspXI VCTCGAGB 1 cut(s) 359
PsuI RGATCY 3 cut(s) 42, 173, 924
RsaI GTAC 1 cut(s) 1003
RsaNI GTAC 1 cut(s) 1002
RseI CAYNNNNRTG 1 cut(s) 806
SaqAI TTAA 9 cut(s) 224, 230, 245, 335, 366, 581, 590, 735, 849
Sau3AI GATC 5 cut(s) 42, 173, 631, 924, 982
Sau96I GGNCC 1 cut(s) 1021
ScrFI CCNGG 4 cut(s) 240, 1025, 1032, 1104
SfaNI GCATC 3 cut(s) 338, 360, 652
Sfr274I CTCGAG 1 cut(s) 359
SinI GGWCC 1 cut(s) 1021
SlaI CTCGAG 1 cut(s) 359
SmiMI CAYNNNNRTG 1 cut(s) 806
SmlI CTYRAG 2 cut(s) 359, 589
SmoI CTYRAG 2 cut(s) 359, 589
SsiI CCGC 1 cut(s) 642
SspMI CTAG 3 cut(s) 171, 345, 375
StyD4I CCNGG 4 cut(s) 238, 1023, 1030, 1102
StyI CCWWGG 4 cut(s) 23, 204, 329, 986
TaaI ACNGT 4 cut(s) 88, 342, 653, 1139
TaiI ACGT 6 cut(s) 128, 152, 303, 482, 512, 1101
TaqI TCGA 2 cut(s) 360, 1121
TaqII GACCGA 1 cut(s) 90
TfiI GAWTC 2 cut(s) 78, 971
Tru1I TTAA 9 cut(s) 224, 230, 245, 335, 366, 581, 590, 735, 849
Tru9I TTAA 9 cut(s) 224, 230, 245, 335, 366, 581, 590, 735, 849
TscAI CASTG 2 cut(s) 286, 719
TseFI GTSAC 3 cut(s) 296, 745, 1081
Tsp45I GTSAC 3 cut(s) 296, 745, 1081
TspDTI ATGAA 5 cut(s) 118, 470, 790, 859, 921
TspRI CASTG 2 cut(s) 286, 719
Vha464I CTTAAG 1 cut(s) 589
VpaK11BI GGWCC 1 cut(s) 1021
XapI RAATTY 4 cut(s) 265, 614, 845, 1072
XbaI TCTAGA 1 cut(s) 344
XceI RCATGY 1 cut(s) 1082
XhoI CTCGAG 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 547
XspI CTAG 3 cut(s) 171, 345, 375
Zsp2I ATGCAT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.