AT2G07140

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000186
Physical Location & Seq
Forward (+)
2957516 .. 2959851
2336 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G07140.1

Sequence Viewer

Length: 1329 bp
ATGACGTTACCGGAGCTTCCAAAGGATTTAGTAGAAGAGATACTCAGTTTTGTTCCGGCCACATCTCTGAAGCGATTACGATCCACTTGCAAAGGATGGAATCGTTTATTCAAAGATGACAAGAGATTCACAAGAATACACACTGAAAAAGCCGCAAAGCAGTTTCAACCTCTCACGTTGACGAAGAACTACAGGATTTGTCCTATAAACGTCAATCTCCATGGAACTACTCCATCTCTAGAGGTTAAAAATGAGGTCAGCTTACTCGATCCTCACTCTAAGAATTCAGCAGCTCAGTTCAATATAGATCGAGTCTTTCACTGTGATGGCTTGTTGTTATGCACCTCCCAAAAAGATTCAAGATTCGTCGTTTGGAACCCTTTAACTGGTGTAACCAAGTGGATCGAACTCGGCGATCGTTACAACGAAGGTATGGCTTTTATTCTTGGATATGACAACAAGTCCTGTAATAAGAGCTACAAAGCCATGAGCTTTAATTATTTAGACAAGGATTCTGAAATCTACGAGTTTAGCTCTGACTCATGGAGGGTTATTGATGATATTATCAAGCCACCCCACTACATGGACTACTTTAGAGAGTGTTTCTCTTTGAAGGGAAACACTTACTGGTTGGGTATAGATAGAAGACGAAGGCCACCGGACCTTCGCATAACCTTGATCAAATTTGATTTTGGAACAGAGAAATTTGGTTATGTTTCTCTGCCTCCCCCCTGTCAAGTGCATGGTTTTGAGGCTTCTAATCTTTCCGTTGTCGGAGACGAGAAGCTTTCGGTGTTAGTACAGGCCGGTTCTACATCCAAGACTGAGGTATGGGTGACAAGTAAGATTGGTGAGGCCAATGTGGTGTCGTGGAGCAAGGTGTTATCATTGTATCCGAAGCCTGACGTTGGTTTTTGGCATGGCCTAAGTTTCTTGCTAGACGAGGAGAAGAAAGTCTTCTTGTGTTGTAAGAGTAAGGGATGGATGGAGGAAGAAGACGAGGACAATGTTTACATTGTTGGGGAGGATAATAAATTCATACTACTGAATTTTGGAGTTGAGACAATTGGAGGAGAATCGCCAATTATTACTACTTATGTTCCAAGTTTGTCTTTCACTGTGATATACATCAACAAAGGAGACACTATAATGGTGGTTTGGAACCCGTTTATGGGTCAAACCAGGTGGATCCAACATATAGATCTTGACAATACACGCTACAACTATGATCATGATCTCTCTCTAGGAGAGCTTAAGTTTCTTGCTCGACGAGGAGAAGAAAGTCGTCCAAATTTGTCAGAGATGGTTCGACAATGGAAGCTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 FBA_1 Lzipper-MIP1

Protein Analysis

442

Amino Acids

51.02

Weight (kDa)

6.35

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 43 3.1e-09 F-box domain
F-box-like PF12937 4 - 45 2.9e-07 F-box-like
FBA_1 PF07734 60 - 370 2.9e-86 F-box associated beta propeller domain
FBA_3 PF08268 90 - 299 9e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 583
AciI CCGC 1 cut(s) 153
AclWI GGATC 5 cut(s) 75, 263, 410, 1183, 1196
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 6 cut(s) 283, 683, 704, 1034, 1048, 1291
AcuI CTGAAG 1 cut(s) 89
AfaI GTAC 1 cut(s) 801
AfiI CCNNNNNNNGG 5 cut(s) 386, 583, 908, 1171, 1172
AflII CTTAAG 1 cut(s) 1253
AgsI TTSAA 6 cut(s) 112, 167, 301, 360, 613, 1325
AhdI GACNNNNNGTC 1 cut(s) 460
AjnI CCWGG 1 cut(s) 1181
AluBI AGCT 9 cut(s) 16, 261, 293, 477, 492, 534, 787, 1252, 1321
AluI AGCT 9 cut(s) 16, 261, 293, 477, 492, 534, 787, 1252, 1321
Alw26I GTCTC 3 cut(s) 771, 1055, 1134
AlwI GGATC 5 cut(s) 75, 263, 410, 1183, 1196
AoxI GGCC 5 cut(s) 57, 653, 804, 855, 922
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 6 cut(s) 283, 683, 704, 1034, 1048, 1291
Asp700I GAANNNNTTC 1 cut(s) 956
AspS9I GGNCC 1 cut(s) 661
AsuHPI GGTGA 2 cut(s) 847, 863
AvaII GGWCC 1 cut(s) 661
BamHI GGATCC 1 cut(s) 1188
BbsI GAAGAC 3 cut(s) 652, 949, 1002
BbvI GCAGC 1 cut(s) 302
BccI CCATC 6 cut(s) 90, 241, 320, 975, 979, 1297
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BciT130I CCWGG 1 cut(s) 1183
BciVI GTATCC 1 cut(s) 903
BclI TGATCA 2 cut(s) 678, 1228
BcoDI GTCTC 3 cut(s) 771, 1055, 1134
BfaI CTAG 3 cut(s) 239, 938, 1244
BfmI CTRYAG 1 cut(s) 190
BfrI CTTAAG 1 cut(s) 1253
BfuI GTATCC 1 cut(s) 903
BglII AGATCT 1 cut(s) 1201
BisI GCNGC 2 cut(s) 153, 291
BlsI GCNGC 2 cut(s) 154, 292
Bme1390I CCNGG 1 cut(s) 1183
Bme18I GGWCC 1 cut(s) 661
BmeRI GACNNNNNGTC 1 cut(s) 460
BmgT120I GGNCC 1 cut(s) 661
BmiI GGNNCC 3 cut(s) 377, 1163, 1190
BmrFI CCNGG 1 cut(s) 1183
BpiI GAAGAC 3 cut(s) 652, 949, 1002
BplI GAGNNNNNCTC 4 cut(s) 518, 550, 590, 622
BsaBI GATNNNNATC 3 cut(s) 79, 1127, 1233
BsaJI CCNNGG 1 cut(s) 220
BsaWI WCCGGW 2 cut(s) 10, 658
Bsc4I CCNNNNNNNGG 5 cut(s) 386, 583, 908, 1171, 1172
Bse118I RCCGGY 1 cut(s) 806
Bse1I ACTGG 2 cut(s) 391, 632
Bse8I GATNNNNATC 3 cut(s) 79, 1127, 1233
BseBI CCWGG 1 cut(s) 1183
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 4 cut(s) 101, 815, 986, 990
BseJI GATNNNNATC 3 cut(s) 79, 1127, 1233
BseLI CCNNNNNNNGG 5 cut(s) 386, 583, 908, 1171, 1172
BseMII CTCAG 3 cut(s) 58, 308, 816
BseNI ACTGG 2 cut(s) 391, 632
BseRI GAGGAG 3 cut(s) 959, 1086, 1287
BseXI GCAGC 1 cut(s) 302
Bsh1285I CGRYCG 1 cut(s) 418
BshFI GGCC 5 cut(s) 59, 655, 806, 857, 924
BsiEI CGRYCG 1 cut(s) 418
BsiSI CCGG 4 cut(s) 11, 56, 659, 807
BslI CCNNNNNNNGG 5 cut(s) 386, 583, 908, 1171, 1172
BsmAI GTCTC 3 cut(s) 771, 1055, 1134
BsmBI CGTCTC 1 cut(s) 771
BsnI GGCC 5 cut(s) 59, 655, 806, 857, 924
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 1 cut(s) 153
BspANI GGCC 5 cut(s) 59, 655, 806, 857, 924
BspCNI CTCAG 3 cut(s) 57, 307, 817
BspHI TCATGA 1 cut(s) 1231
BspLI GGNNCC 3 cut(s) 377, 1163, 1190
BspPI GGATC 5 cut(s) 75, 263, 410, 1183, 1196
BspTI CTTAAG 1 cut(s) 1253
BsrFI RCCGGY 1 cut(s) 806
BsrI ACTGG 2 cut(s) 391, 632
BssAI RCCGGY 1 cut(s) 806
BssECI CCNNGG 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 1183
Bst4CI ACNGT 2 cut(s) 323, 1120
Bst6I CTCTTC 1 cut(s) 30
BstAFI CTTAAG 1 cut(s) 1253
BstDEI CTNAG 5 cut(s) 44, 279, 294, 825, 926
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 4 cut(s) 101, 815, 986, 990
BstMAI GTCTC 3 cut(s) 771, 1055, 1134
BstMCI CGRYCG 1 cut(s) 418
BstNI CCWGG 1 cut(s) 1183
BstSCI CCNGG 1 cut(s) 1181
BstSFI CTRYAG 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 302
BstV2I GAAGAC 3 cut(s) 652, 949, 1002
BstX2I RGATCY 2 cut(s) 1188, 1201
BstYI RGATCY 2 cut(s) 1188, 1201
BsuI GTATCC 1 cut(s) 903
BsuRI GGCC 5 cut(s) 59, 655, 806, 857, 924
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 4 cut(s) 101, 815, 986, 990
BtsIMutI CAGTG 3 cut(s) 141, 319, 1116
CciI TCATGA 1 cut(s) 1231
Cfr10I RCCGGY 1 cut(s) 806
Cfr13I GGNCC 1 cut(s) 661
CsiI ACCWGGT 1 cut(s) 1181
Csp6I GTAC 1 cut(s) 800
CspCI CAANNNNNGTGG 2 cut(s) 1166, 1201
CviAII CATG 7 cut(s) 221, 487, 543, 583, 743, 920, 1232
CviQI GTAC 1 cut(s) 800
DdeI CTNAG 5 cut(s) 44, 279, 294, 825, 926
DriI GACNNNNNGTC 1 cut(s) 460
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 30
Eam1105I GACNNNNNGTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 661
Eco57I CTGAAG 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 1181
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
Esp3I CGTCTC 1 cut(s) 771
FaeI CATG 7 cut(s) 224, 490, 546, 586, 746, 923, 1235
FalI AAGNNNNNCTT 4 cut(s) 941, 973, 1096, 1128
FatI CATG 7 cut(s) 220, 486, 542, 582, 742, 919, 1231
FbaI TGATCA 2 cut(s) 678, 1228
Fnu4HI GCNGC 2 cut(s) 153, 291
FokI GGATG 4 cut(s) 108, 802, 993, 997
Fsp4HI GCNGC 2 cut(s) 153, 291
FspBI CTAG 3 cut(s) 239, 938, 1244
GluI GCNGC 2 cut(s) 153, 291
HaeIII GGCC 5 cut(s) 59, 655, 806, 857, 924
HapII CCGG 4 cut(s) 11, 56, 659, 807
Hin1II CATG 7 cut(s) 224, 490, 546, 586, 746, 923, 1235
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HindIII AAGCTT 2 cut(s) 785, 1319
HinfI GANTC 8 cut(s) 100, 126, 312, 356, 363, 512, 539, 1076
HpaII CCGG 4 cut(s) 11, 56, 659, 807
HphI GGTGA 2 cut(s) 847, 863
Hpy166II GTNNAC 2 cut(s) 180, 1012
Hpy188I TCNGA 6 cut(s) 69, 517, 538, 776, 897, 1300
Hpy188III TCNNGA 4 cut(s) 239, 360, 1205, 1232
Hpy8I GTNNAC 2 cut(s) 180, 1012
Hpy99I CGWCG 2 cut(s) 371, 1272
HpyAV CCTTC 4 cut(s) 422, 607, 645, 674
HpyCH4III ACNGT 2 cut(s) 323, 1120
HpyCH4IV ACGT 4 cut(s) 5, 176, 210, 906
HpyCH4V TGCA 3 cut(s) 90, 342, 742
HpyF3I CTNAG 5 cut(s) 44, 279, 294, 825, 926
HpySE526I ACGT 4 cut(s) 5, 176, 210, 906
Hsp92II CATG 7 cut(s) 224, 490, 546, 586, 746, 923, 1235
Ksp22I TGATCA 2 cut(s) 678, 1228
LmnI GCTCC 2 cut(s) 13, 873
Lsp1109I GCAGC 1 cut(s) 302
MabI ACCWGGT 1 cut(s) 1181
MaeI CTAG 3 cut(s) 239, 938, 1244
MaeII ACGT 4 cut(s) 5, 176, 210, 906
MaeIII GTNAC 4 cut(s) 6, 391, 419, 835
MboII GAAGA 8 cut(s) 47, 196, 657, 949, 961, 1004, 1007, 1289
MfeI CAATTG 1 cut(s) 1065
MflI RGATCY 2 cut(s) 1188, 1201
MluCI AATT 9 cut(s) 283, 496, 683, 704, 1034, 1048, 1065, 1083, 1291
MlyI GAGTC 2 cut(s) 321, 533
MmeI TCCRAC 2 cut(s) 754, 1216
MroXI GAANNNNTTC 1 cut(s) 956
MseI TTAA 4 cut(s) 246, 383, 495, 1254
MslI CAYNNNNRTG 2 cut(s) 324, 1148
MspCI CTTAAG 1 cut(s) 1253
MspI CCGG 4 cut(s) 11, 56, 659, 807
MspR9I CCNGG 1 cut(s) 1183
MunI CAATTG 1 cut(s) 1065
MvaI CCWGG 1 cut(s) 1183
NcoI CCATGG 1 cut(s) 220
NlaIII CATG 7 cut(s) 224, 490, 546, 586, 746, 923, 1235
NlaIV GGNNCC 3 cut(s) 377, 1163, 1190
NmeAIII GCCGAG 1 cut(s) 390
NmuCI GTSAC 1 cut(s) 835
PagI TCATGA 1 cut(s) 1231
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PdmI GAANNNNTTC 1 cut(s) 956
PfeI GAWTC 6 cut(s) 100, 126, 356, 363, 512, 1076
PflMI CCANNNNNTGG 1 cut(s) 583
PkrI GCNGC 2 cut(s) 154, 292
Ple19I CGATCG 1 cut(s) 418
PleI GAGTC 2 cut(s) 320, 533
PpsI GAGTC 2 cut(s) 320, 533
Psp6I CCWGG 1 cut(s) 1181
PspGI CCWGG 1 cut(s) 1181
PspN4I GGNNCC 3 cut(s) 377, 1163, 1190
PspPI GGNCC 1 cut(s) 661
PsuI RGATCY 2 cut(s) 1188, 1201
PvuI CGATCG 1 cut(s) 418
RsaI GTAC 1 cut(s) 801
RsaNI GTAC 1 cut(s) 800
RseI CAYNNNNRTG 2 cut(s) 324, 1148
SaqAI TTAA 4 cut(s) 246, 383, 495, 1254
SatI GCNGC 2 cut(s) 153, 291
Sau96I GGNCC 1 cut(s) 661
SchI GAGTC 2 cut(s) 321, 533
ScrFI CCNGG 1 cut(s) 1183
SexAI ACCWGGT 1 cut(s) 1181
SfcI CTRYAG 1 cut(s) 190
SinI GGWCC 1 cut(s) 661
SmiMI CAYNNNNRTG 2 cut(s) 324, 1148
SmlI CTYRAG 1 cut(s) 1253
SmoI CTYRAG 1 cut(s) 1253
Sse9I AATT 9 cut(s) 283, 496, 683, 704, 1034, 1048, 1065, 1083, 1291
SsiI CCGC 1 cut(s) 153
SspMI CTAG 3 cut(s) 239, 938, 1244
StyD4I CCNGG 1 cut(s) 1181
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 323, 1120
TaiI ACGT 4 cut(s) 8, 179, 213, 909
TaqI TCGA 5 cut(s) 267, 310, 405, 1267, 1309
TasI AATT 9 cut(s) 283, 496, 683, 704, 1034, 1048, 1065, 1083, 1291
TatI WGTACW 1 cut(s) 799
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 6 cut(s) 100, 126, 356, 363, 512, 1076
Tru1I TTAA 4 cut(s) 246, 383, 495, 1254
Tru9I TTAA 4 cut(s) 246, 383, 495, 1254
TscAI CASTG 3 cut(s) 148, 326, 1123
TseFI GTSAC 1 cut(s) 835
TseI GCWGC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 835
TspDTI ATGAA 1 cut(s) 1027
TspGWI ACGGA 1 cut(s) 757
TspRI CASTG 3 cut(s) 148, 326, 1123
Van91I CCANNNNNTGG 1 cut(s) 583
Vha464I CTTAAG 1 cut(s) 1253
VpaK11BI GGWCC 1 cut(s) 661
XapI RAATTY 6 cut(s) 283, 683, 704, 1034, 1048, 1291
XbaI TCTAGA 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 956
XspI CTAG 3 cut(s) 239, 938, 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.