AT3G23420

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
8386273 .. 8387366
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23420.1

Sequence Viewer

Length: 858 bp
ATGGCGGAGGAGGTGCTTTCTAGGGTTCCGATGACATCTCTAAGAAGACTCCGATTTACTTGCAAAAAGTGGAACACTTTATCTAGATGTAGGAGCTTTGCAAAGAAGCACCTTGTTTGTCAAGCAAAAGTAGCTGCAAAGAAAAGAGAGTATAAGGTGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGCATAAATCTTCAGAACAACGTTGAATTGTGTATAAAGCGTGAACGTGAACTTCTTTTCCCCGACGCTTCAGATCAAATTTACGTCCGTCACGTCTTTCACTGCGACGGTTTATTGTTATGCATCATGAAAGACAACCCTAGGCTTGTGGTTTGTAACCCGTATAGTGGACAAACCCGGTGGATCGAGACTACAAATAATCCTCAGAGATTAGATGCATATTCGTATGCTCTCGGATACAATAGCAGTACCAAATCCCACAAAATCTTGAGTTTTGGTATGATGTTTGATTATGTCTCCTCCACTTCTGCTGAGTTCAAAATCTACGACTTTAACTCTGACTCATGGAGGGGAGACATTTGGGCCGCGGTTTGCCTTCGCCGCCCTTTGAGTGGTATCTTCAAGAGTTCTCTGTTATTATCTAATGTTAGAGATGAGCAGCTTGCGGTGTTATTTCAGCGTATGGATACATTACAGATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACACGGTGTCATGGAGCAGCAAGTTCTTCTTATCAGTGGATATGAGAGAACTCACCGGCCGTTACTCTATGTTTTCGTTTAGTGATGCAAGTTTCTTCATTGATGAGGAGAAGAAAGTTGCAGTGCTTACATCGTTGGAGAGGATGGATCCTTGA

Protein Analysis

285

Amino Acids

33.38

Weight (kDa)

9.22

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 53 - 181 7.4e-43 F-box associated beta propeller domain
FBA_1 PF07734 199 - 279 2.1e-22 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 194
AccII CGCG 1 cut(s) 560
AciI CCGC 5 cut(s) 5, 558, 560, 574, 638
AclI AACGTT 1 cut(s) 213
AclWI GGATC 2 cut(s) 383, 845
AcoI YGGCCR 1 cut(s) 760
AcsI RAATTY 1 cut(s) 270
AcuI CTGAAG 2 cut(s) 188, 246
AfaI GTAC 1 cut(s) 442
AfiI CCNNNNNNNGG 2 cut(s) 359, 584
AgsI TTSAA 3 cut(s) 218, 511, 595
AjiI CACGTC 1 cut(s) 286
AloI GAACNNNNNNTCC 2 cut(s) 234, 266
AluBI AGCT 3 cut(s) 96, 134, 634
AluI AGCT 3 cut(s) 96, 134, 634
Alw26I GTCTC 3 cut(s) 374, 493, 540
AlwI GGATC 2 cut(s) 383, 845
AoxI GGCC 2 cut(s) 555, 760
ApeKI GCWGC 3 cut(s) 134, 631, 720
ApoI RAATTY 1 cut(s) 270
AspA2I CCTAGG 1 cut(s) 332
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 555
AsuC2I CCSGG 1 cut(s) 370
AsuHPI GGTGA 1 cut(s) 748
AvrII CCTAGG 1 cut(s) 332
BamHI GGATCC 1 cut(s) 850
BanII GRGCYC 1 cut(s) 702
BbsI GAAGAC 1 cut(s) 52
BbvI GCAGC 3 cut(s) 121, 643, 732
BccI CCATC 3 cut(s) 163, 664, 841
BceAI ACGGC 1 cut(s) 747
BcgI CGANNNNNNTGC 2 cut(s) 42, 76
BciVI GTATCC 2 cut(s) 422, 652
BcnI CCSGG 1 cut(s) 370
BcoDI GTCTC 3 cut(s) 374, 493, 540
BfaI CTAG 3 cut(s) 21, 84, 333
BfuI GTATCC 2 cut(s) 422, 652
BglII AGATCT 1 cut(s) 675
BisI GCNGC 5 cut(s) 135, 558, 574, 632, 721
BlnI CCTAGG 1 cut(s) 332
BlsI GCNGC 5 cut(s) 136, 559, 575, 633, 722
Bme1390I CCNGG 1 cut(s) 370
BmgBI CACGTC 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 555
BmiI GGNNCC 2 cut(s) 27, 852
BmrFI CCNGG 1 cut(s) 370
BmsI GCATC 4 cut(s) 180, 324, 397, 778
BpiI GAAGAC 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 481
BpuMI CCSGG 1 cut(s) 370
BsaBI GATNNNNATC 1 cut(s) 674
BsaJI CCNNGG 2 cut(s) 332, 558
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 584
Bse118I RCCGGY 1 cut(s) 758
Bse8I GATNNNNATC 1 cut(s) 674
BseDI CCNNGG 2 cut(s) 332, 558
BseGI GGATG 1 cut(s) 852
BseJI GATNNNNATC 1 cut(s) 674
BseLI CCNNNNNNNGG 2 cut(s) 359, 584
BseMII CTCAG 2 cut(s) 410, 495
BseRI GAGGAG 3 cut(s) 23, 481, 824
BseX3I CGGCCG 1 cut(s) 760
BseXI GCAGC 3 cut(s) 121, 643, 732
Bsh1236I CGCG 1 cut(s) 560
Bsh1285I CGRYCG 1 cut(s) 763
BshFI GGCC 2 cut(s) 557, 762
BsiEI CGRYCG 1 cut(s) 763
BsiSI CCGG 2 cut(s) 370, 759
BslI CCNNNNNNNGG 2 cut(s) 359, 584
BsmAI GTCTC 3 cut(s) 374, 493, 540
BsnI GGCC 2 cut(s) 557, 762
Bsp1286I GDGCHC 1 cut(s) 702
Bsp143I GATC 4 cut(s) 265, 375, 675, 850
BspACI CCGC 5 cut(s) 5, 558, 560, 574, 638
BspANI GGCC 2 cut(s) 557, 762
BspCNI CTCAG 2 cut(s) 409, 496
BspFNI CGCG 1 cut(s) 560
BspHI TCATGA 2 cut(s) 162, 318
BspLI GGNNCC 2 cut(s) 27, 852
BspPI GGATC 2 cut(s) 383, 845
BsrFI RCCGGY 1 cut(s) 758
BssAI RCCGGY 1 cut(s) 758
BssECI CCNNGG 2 cut(s) 332, 558
BssMI GATC 4 cut(s) 265, 375, 675, 850
BssT1I CCWWGG 1 cut(s) 332
Bst4CI ACNGT 2 cut(s) 302, 709
BstC8I GCNNGC 1 cut(s) 636
BstDEI CTNAG 4 cut(s) 41, 396, 504, 690
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 1 cut(s) 852
BstFNI CGCG 1 cut(s) 560
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 4 cut(s) 268, 378, 678, 853
BstMAI GTCTC 3 cut(s) 374, 493, 540
BstMBI GATC 4 cut(s) 265, 375, 675, 850
BstMCI CGRYCG 1 cut(s) 763
BstMWI GCNNNNNNNGC 2 cut(s) 131, 573
BstSCI CCNGG 1 cut(s) 368
BstUI CGCG 1 cut(s) 560
BstV1I GCAGC 3 cut(s) 121, 643, 732
BstV2I GAAGAC 1 cut(s) 52
BstX2I RGATCY 2 cut(s) 675, 850
BstYI RGATCY 2 cut(s) 675, 850
BstZI CGGCCG 1 cut(s) 760
BsuI GTATCC 2 cut(s) 422, 652
BsuRI GGCC 2 cut(s) 557, 762
BtgI CCRYGG 1 cut(s) 558
BtrI CACGTC 1 cut(s) 286
BtsCI GGATG 1 cut(s) 852
BtsI GCAGTG 2 cut(s) 292, 831
BtsIMutI CAGTG 3 cut(s) 292, 744, 831
Cac8I GCNNGC 1 cut(s) 636
CciI TCATGA 2 cut(s) 162, 318
CfoI GCGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 758
Cfr13I GGNCC 1 cut(s) 555
Cfr42I CCGCGG 1 cut(s) 561
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 441
CspCI CAANNNNNGTGG 2 cut(s) 353, 388
CviAII CATG 4 cut(s) 163, 319, 537, 714
CviJI RGCY 7 cut(s) 96, 134, 337, 557, 634, 700, 762
CviKI_1 RGCY 7 cut(s) 96, 134, 337, 557, 634, 700, 762
CviQI GTAC 1 cut(s) 441
DdeI CTNAG 4 cut(s) 41, 396, 504, 690
DpnI GATC 4 cut(s) 267, 377, 677, 852
DpnII GATC 4 cut(s) 265, 375, 675, 850
EaeI YGGCCR 1 cut(s) 760
EagI CGGCCG 1 cut(s) 760
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 760
Eco130I CCWWGG 1 cut(s) 332
Eco24I GRGCYC 1 cut(s) 702
Eco52I CGGCCG 1 cut(s) 760
Eco57I CTGAAG 2 cut(s) 188, 246
EcoT14I CCWWGG 1 cut(s) 332
EcoT22I ATGCAT 2 cut(s) 317, 412
EcoT38I GRGCYC 1 cut(s) 702
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 4 cut(s) 166, 322, 540, 717
FalI AAGNNNNNCTT 2 cut(s) 716, 748
FatI CATG 4 cut(s) 162, 318, 536, 713
Fnu4HI GCNGC 5 cut(s) 135, 558, 574, 632, 721
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 5 cut(s) 135, 558, 574, 632, 721
FspAI RTGCGCAY 1 cut(s) 194
FspBI CTAG 3 cut(s) 21, 84, 333
FspI TGCGCA 1 cut(s) 194
GlaI GCGC 1 cut(s) 194
GluI GCNGC 5 cut(s) 135, 558, 574, 632, 721
HaeIII GGCC 2 cut(s) 557, 762
HapII CCGG 2 cut(s) 370, 759
HgaI GACGC 1 cut(s) 266
HhaI GCGC 1 cut(s) 195
Hin1II CATG 4 cut(s) 166, 322, 540, 717
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HinfI GANTC 2 cut(s) 48, 533
HpaII CCGG 2 cut(s) 370, 759
HphI GGTGA 1 cut(s) 748
Hpy166II GTNNAC 3 cut(s) 236, 242, 362
Hpy188I TCNGA 7 cut(s) 30, 53, 207, 265, 399, 428, 532
Hpy188III TCNNGA 6 cut(s) 84, 163, 319, 379, 460, 595
Hpy8I GTNNAC 3 cut(s) 236, 242, 362
Hpy99I CGWCG 2 cut(s) 260, 302
HpyAV CCTTC 1 cut(s) 578
HpyCH4III ACNGT 2 cut(s) 302, 709
HpyCH4IV ACGT 4 cut(s) 213, 238, 276, 285
HpyCH4V TGCA 7 cut(s) 63, 101, 137, 315, 410, 791, 824
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 573
HpyF3I CTNAG 4 cut(s) 41, 396, 504, 690
HpySE526I ACGT 4 cut(s) 213, 238, 276, 285
Hsp92II CATG 4 cut(s) 166, 322, 540, 717
HspAI GCGC 1 cut(s) 193
KspI CCGCGG 1 cut(s) 561
Kzo9I GATC 4 cut(s) 265, 375, 675, 850
LmnI GCTCC 2 cut(s) 93, 717
LpnPI CCDG 3 cut(s) 383, 664, 772
Lsp1109I GCAGC 3 cut(s) 121, 643, 732
LweI GCATC 4 cut(s) 180, 324, 397, 778
MaeI CTAG 3 cut(s) 21, 84, 333
MaeII ACGT 4 cut(s) 213, 238, 276, 285
MaeIII GTNAC 4 cut(s) 281, 347, 682, 764
MalI GATC 4 cut(s) 267, 377, 677, 852
MboI GATC 4 cut(s) 265, 375, 675, 850
MboII GAAGA 6 cut(s) 57, 194, 583, 721, 790, 826
MflI RGATCY 2 cut(s) 675, 850
MhlI GDGCHC 1 cut(s) 702
MluCI AATT 2 cut(s) 218, 270
MlyI GAGTC 2 cut(s) 42, 527
MmeI TCCRAC 1 cut(s) 819
MnlI CCTC 6 cut(s) 4, 405, 502, 534, 802, 837
Mph1103I ATGCAT 2 cut(s) 317, 412
MseI TTAA 1 cut(s) 525
MslI CAYNNNNRTG 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 560
MspI CCGG 2 cut(s) 370, 759
MspR9I CCNGG 1 cut(s) 370
MvnI CGCG 1 cut(s) 560
MwoI GCNNNNNNNGC 2 cut(s) 131, 573
NciI CCSGG 1 cut(s) 370
NdeII GATC 4 cut(s) 265, 375, 675, 850
NlaIII CATG 4 cut(s) 166, 322, 540, 717
NlaIV GGNNCC 2 cut(s) 27, 852
NmuCI GTSAC 1 cut(s) 281
NsbI TGCGCA 1 cut(s) 194
NsiI ATGCAT 2 cut(s) 317, 412
PagI TCATGA 2 cut(s) 162, 318
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PkrI GCNGC 5 cut(s) 136, 559, 575, 633, 722
PleI GAGTC 2 cut(s) 42, 527
PpsI GAGTC 2 cut(s) 42, 527
Psp1406I AACGTT 1 cut(s) 213
PspN4I GGNNCC 2 cut(s) 27, 852
PspPI GGNCC 1 cut(s) 555
PsuI RGATCY 2 cut(s) 675, 850
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
RseI CAYNNNNRTG 1 cut(s) 167
SacII CCGCGG 1 cut(s) 561
SaqAI TTAA 1 cut(s) 525
SatI GCNGC 5 cut(s) 135, 558, 574, 632, 721
Sau3AI GATC 4 cut(s) 265, 375, 675, 850
Sau96I GGNCC 1 cut(s) 555
SchI GAGTC 2 cut(s) 42, 527
ScrFI CCNGG 1 cut(s) 370
SduI GDGCHC 1 cut(s) 702
SfaNI GCATC 4 cut(s) 180, 324, 397, 778
Sfr303I CCGCGG 1 cut(s) 561
SgrBI CCGCGG 1 cut(s) 561
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
Sse9I AATT 2 cut(s) 218, 270
SsiI CCGC 5 cut(s) 5, 558, 560, 574, 638
SspMI CTAG 3 cut(s) 21, 84, 333
StyD4I CCNGG 1 cut(s) 368
StyI CCWWGG 1 cut(s) 332
TaaI ACNGT 2 cut(s) 302, 709
TaiI ACGT 4 cut(s) 216, 241, 279, 288
TaqI TCGA 1 cut(s) 378
TasI AATT 2 cut(s) 218, 270
TauI GCSGC 2 cut(s) 560, 576
Tru1I TTAA 1 cut(s) 525
Tru9I TTAA 1 cut(s) 525
TscAI CASTG 3 cut(s) 299, 744, 831
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 3 cut(s) 134, 631, 720
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 335, 790
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 3 cut(s) 299, 744, 831
XapI RAATTY 1 cut(s) 270
XbaI TCTAGA 1 cut(s) 83
XmaJI CCTAGG 1 cut(s) 332
XspI CTAG 3 cut(s) 21, 84, 333
Zsp2I ATGCAT 2 cut(s) 317, 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.