AT3G17400

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
5954887 .. 5955444
558 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17400.1

Sequence Viewer

Length: 558 bp
ATGATGACATTGTCCGATCTTCCAAGTGATTTGGCAGAGGAGGTTCTGTCTAAGATTCCGGTGACATCTCTGAGAGGGGTCAGAGCTACTTGCAAAAAGTGGAACACTTTATCCAAAGATCGGAGCTTTACAAGGAAACACCTTGCTCAAGCCAAAGCAGCGGCAGCAAGGGAGTTTATGGTGGTCATGGTGATGGATTTTCAGGTTTATTTGATGGGCATCAATCTCCATAAGGACGTTGACGCAACTATAAACGGTCAAGGTAAACTTATTAGCTTAGACGATTCCAATCAAGTCGATATATCTTACGTCTATCACTGCGACAGTTTAGTCTTATGCATCCCAAAAGACTGCGCTAGGCTTGTTGTTTGGAATCCGTATTGGGGCCAAACCTTATGGTTCAAGCCCACTAGTCTTCGCCATTTTCCGCACTGGTATATGTATGCTATTGGATACCAGATGCGAAGAGGAAACCGAGACGCGAAAACTTCAAGGTGGTTGTTGACTTGTAGACCGACGACCAAAACTATCACAAAGAACACGATCGATCACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

185

Amino Acids

21.34

Weight (kDa)

9.44

Isoelectric Point (pI)

28.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 45 9.5e-09 F-box domain
F-box-like PF12937 4 - 45 1.9e-06 F-box-like
FBA_1 PF07734 60 - 166 6e-28 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
AccI GTMKAC 1 cut(s) 511
AccII CGCG 1 cut(s) 482
AciI CCGC 2 cut(s) 161, 428
AfiI CCNNNNNNNGG 2 cut(s) 120, 383
AgsI TTSAA 2 cut(s) 403, 492
AhlI ACTAGT 1 cut(s) 410
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 3 cut(s) 86, 126, 276
AluI AGCT 3 cut(s) 86, 126, 276
Alw26I GTCTC 1 cut(s) 471
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 2 cut(s) 158, 164
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 385
AsuHPI GGTGA 3 cut(s) 73, 202, 542
BbsI GAAGAC 1 cut(s) 407
BbvI GCAGC 2 cut(s) 170, 176
BccI CCATC 2 cut(s) 187, 208
BciVI GTATCC 1 cut(s) 446
BcoDI GTCTC 1 cut(s) 471
BcuI ACTAGT 1 cut(s) 410
BfaI CTAG 2 cut(s) 357, 411
BfuI GTATCC 1 cut(s) 446
BisI GCNGC 3 cut(s) 159, 162, 165
BlsI GCNGC 3 cut(s) 160, 163, 166
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 1 cut(s) 386
BmsI GCATC 3 cut(s) 228, 348, 450
BpiI GAAGAC 1 cut(s) 407
BpuEI CTTGAG 1 cut(s) 132
Bsa29I ATCGAT 1 cut(s) 546
BsaBI GATNNNNATC 2 cut(s) 218, 288
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 383
Bse1I ACTGG 1 cut(s) 437
Bse8I GATNNNNATC 2 cut(s) 218, 288
BseCI ATCGAT 1 cut(s) 546
BseGI GGATG 1 cut(s) 339
BseJI GATNNNNATC 2 cut(s) 218, 288
BseLI CCNNNNNNNGG 2 cut(s) 120, 383
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 437
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 2 cut(s) 170, 176
Bsh1236I CGCG 1 cut(s) 482
Bsh1285I CGRYCG 1 cut(s) 546
BshFI GGCC 1 cut(s) 387
BshVI ATCGAT 1 cut(s) 546
BsiEI CGRYCG 1 cut(s) 546
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 2 cut(s) 120, 383
BsmAI GTCTC 1 cut(s) 471
BsmBI CGTCTC 1 cut(s) 471
BsnI GGCC 1 cut(s) 387
Bsp143I GATC 4 cut(s) 16, 118, 543, 547
BspACI CCGC 2 cut(s) 161, 428
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 1 cut(s) 63
BspDI ATCGAT 1 cut(s) 546
BspFNI CGCG 1 cut(s) 482
BspLI GGNNCC 1 cut(s) 386
BsrI ACTGG 1 cut(s) 437
BssMI GATC 4 cut(s) 16, 118, 543, 547
Bst4CI ACNGT 2 cut(s) 257, 326
Bst6I CTCTTC 1 cut(s) 460
BstDEI CTNAG 3 cut(s) 51, 71, 277
BstF5I GGATG 1 cut(s) 339
BstFNI CGCG 1 cut(s) 482
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 4 cut(s) 19, 121, 546, 550
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 4 cut(s) 16, 118, 543, 547
BstMCI CGRYCG 1 cut(s) 546
BstMWI GCNNNNNNNGC 2 cut(s) 158, 164
BstUI CGCG 1 cut(s) 482
BstV1I GCAGC 2 cut(s) 170, 176
BstV2I GAAGAC 1 cut(s) 407
Bsu15I ATCGAT 1 cut(s) 546
BsuI GTATCC 1 cut(s) 446
BsuRI GGCC 1 cut(s) 387
BsuTUI ATCGAT 1 cut(s) 546
BtsCI GGATG 1 cut(s) 339
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 2 cut(s) 316, 430
CfoI GCGC 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 385
ClaI ATCGAT 1 cut(s) 546
CseI GACGC 2 cut(s) 251, 488
CviAII CATG 1 cut(s) 187
CviJI RGCY 7 cut(s) 86, 126, 152, 276, 361, 387, 406
CviKI_1 RGCY 7 cut(s) 86, 126, 152, 276, 361, 387, 406
DdeI CTNAG 3 cut(s) 51, 71, 277
DpnI GATC 4 cut(s) 18, 120, 545, 549
DpnII GATC 4 cut(s) 16, 118, 543, 547
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
Eam1104I CTCTTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 460
EcoT22I ATGCAT 1 cut(s) 341
Esp3I CGTCTC 1 cut(s) 471
FaeI CATG 1 cut(s) 190
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FatI CATG 1 cut(s) 186
FblI GTMKAC 1 cut(s) 511
Fnu4HI GCNGC 3 cut(s) 159, 162, 165
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 3 cut(s) 159, 162, 165
FspBI CTAG 2 cut(s) 357, 411
GlaI GCGC 1 cut(s) 355
GluI GCNGC 3 cut(s) 159, 162, 165
HaeIII GGCC 1 cut(s) 387
HapII CCGG 1 cut(s) 59
HgaI GACGC 2 cut(s) 251, 488
HhaI GCGC 1 cut(s) 356
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HincII GTYRAC 2 cut(s) 241, 504
HindII GTYRAC 2 cut(s) 241, 504
HinfI GANTC 3 cut(s) 55, 284, 373
HpaII CCGG 1 cut(s) 59
HphI GGTGA 3 cut(s) 73, 202, 542
Hpy166II GTNNAC 4 cut(s) 241, 266, 504, 512
Hpy188I TCNGA 4 cut(s) 16, 72, 83, 123
Hpy8I GTNNAC 4 cut(s) 241, 266, 504, 512
Hpy99I CGWCG 1 cut(s) 520
HpyCH4III ACNGT 2 cut(s) 257, 326
HpyCH4IV ACGT 2 cut(s) 237, 309
HpyCH4V TGCA 2 cut(s) 93, 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 164
HpyF3I CTNAG 3 cut(s) 51, 71, 277
HpySE526I ACGT 2 cut(s) 237, 309
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 1 cut(s) 354
Kzo9I GATC 4 cut(s) 16, 118, 543, 547
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 4 cut(s) 72, 188, 418, 470
Lsp1109I GCAGC 2 cut(s) 170, 176
LweI GCATC 3 cut(s) 228, 348, 450
MaeI CTAG 2 cut(s) 357, 411
MaeII ACGT 2 cut(s) 237, 309
MaeIII GTNAC 1 cut(s) 61
MalI GATC 4 cut(s) 18, 120, 545, 549
MboI GATC 4 cut(s) 16, 118, 543, 547
MboII GAAGA 3 cut(s) 11, 407, 477
MnlI CCTC 4 cut(s) 31, 34, 68, 461
Mph1103I ATGCAT 1 cut(s) 341
MslI CAYNNNNRTG 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 1 cut(s) 59
MvnI CGCG 1 cut(s) 482
MwoI GCNNNNNNNGC 2 cut(s) 158, 164
NdeII GATC 4 cut(s) 16, 118, 543, 547
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 386
NmuCI GTSAC 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 341
PfeI GAWTC 3 cut(s) 55, 284, 373
PflFI GACNNNGTC 1 cut(s) 10
PkrI GCNGC 3 cut(s) 160, 163, 166
Ple19I CGATCG 1 cut(s) 546
PspN4I GGNNCC 1 cut(s) 386
PspPI GGNCC 1 cut(s) 385
PsyI GACNNNGTC 1 cut(s) 10
PvuI CGATCG 1 cut(s) 546
RseI CAYNNNNRTG 1 cut(s) 191
SatI GCNGC 3 cut(s) 159, 162, 165
Sau3AI GATC 4 cut(s) 16, 118, 543, 547
Sau96I GGNCC 1 cut(s) 385
SfaNI GCATC 3 cut(s) 228, 348, 450
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
SpeI ACTAGT 1 cut(s) 410
SsiI CCGC 2 cut(s) 161, 428
SspMI CTAG 2 cut(s) 357, 411
TaaI ACNGT 2 cut(s) 257, 326
TaiI ACGT 2 cut(s) 240, 312
TaqI TCGA 2 cut(s) 297, 546
TaqII GACCGA 1 cut(s) 529
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 3 cut(s) 55, 284, 373
TscAI CASTG 2 cut(s) 323, 437
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 2 cut(s) 158, 164
Tsp45I GTSAC 1 cut(s) 61
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 2 cut(s) 323, 437
Tth111I GACNNNGTC 1 cut(s) 10
XmiI GTMKAC 1 cut(s) 511
XspI CTAG 2 cut(s) 357, 411
Zsp2I ATGCAT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.