AT3G49980
ERF Family

termination of mitochondrial transcription

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
18530290 .. 18531634
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49980.1

Sequence Viewer

Length: 1149 bp
ATGGTGTTGAACCTTCCACAGGAGTTGTTAGAGGAGATACTATGTCGTGTTCCGGCCACATCTCTCAAACAATTACGACTTACGTGCAAAGAATGGAACCGTTTATTCAACGATAGGACATTCTCAAGAAAACACTTTGATAAAGCCCCAAAACAGTTTCTTATCACAGTACTAGAGGAAAGATGTAGGCTTTCTTCACTGAGCATCAATCTCCATAGTGGATTTCCTTCTGAAGAGTTTACAGGTGAACTTAGCCCAATCGATTATCATTCTAATTCAAGTCAAGTCATTATAATGAAAATATTTCACTGTGATGGCTTATTTGTATGCACCATCCTAAAAGACACTAGAATCGTGGTTTGGAATCCGTGTACTGGTCAAAAGAAGTGGATCCAAACCGGCGAAAATCTCGACGAAAACGGTCAAGACTTTGTTCTTGGATATTACCAAGACAATAAATCAAGCGATAAGAGCTACAAGATATTGAGCTACAAGGGTTATAATTATGGCGACCAAGAATTCAAAATCTATGACATAAAATCTAATACATGGAGGAATCTTGATGTCACTCCGATTCCAGGCAACTACTTCACTTGTTCTGATTACCGCGTGTCTTTGAAGGGAAATACTTACTGGTTTGCTTATGATTTGAAAGACGAGCAGTTAGGGTTAATCAGTTTTGATTATACCACAGAGAGATTTGAACGTCTATGGCTTCCCTTTCAGTGTGATATTTCTGATCATGATTATTCTCTATCAGTTGTTGGAGAAGAAAAACTTTCGGTGGTATTACAGCTTAAGGATGCACCAAGAAGAGAGATATGGATAACAAATAAGATGGATGATGAGACCAAAGAGATGTCGTGGAGAAAGCTTTTCGAAGTGGAAGTCGGTACTAGATATTATATGTGGAGCGGTAGACCTTTCTTGGTCGACGAGGAAAAGAAGATTGTCGTGTGTTGTGAGAAATGCCAAAAAAAATGCCAACCGGTTATAACAGTATCCATGGTTGAGGCGGATAGTAATGCCACACGAGTGTATTTTCCAGTAGTGACAATGACTTCATATTGGCCACATTTTGTTGATTATGTTCCAAGTTTGATTCAAATCCAACAATCGGAGGCAAACGAAAAAGAGCTGAATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006355 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006914 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016236 GO:0019219 GO:0019222 GO:0019538 GO:0019843 GO:0019867 GO:0022607 GO:0022613 GO:0022618 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031966 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032270 GO:0032502 GO:0032543 GO:0034248 GO:0034250 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045892 GO:0045934 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0060255 GO:0061668 GO:0061919 GO:0065003 GO:0065007 GO:0070013 GO:0070129 GO:0070131 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903108 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

382

Amino Acids

44.87

Weight (kDa)

5.47

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 41 1.7e-09 F-box domain
F-box-like PF12937 3 - 45 4.2e-08 F-box-like
FBA_1 PF07734 58 - 370 7e-88 F-box associated beta propeller domain
FBA_3 PF08268 71 - 290 1.5e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 293, 501, 995
AccBSI CCGCTC 1 cut(s) 915
AccI GTMKAC 2 cut(s) 919, 933
AccII CGCG 1 cut(s) 609
AciI CCGC 3 cut(s) 607, 915, 1016
AclWI GGATC 2 cut(s) 385, 398
AcoI YGGCCR 2 cut(s) 54, 1070
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 3 cut(s) 171, 373, 895
AfiI CCNNNNNNNGG 4 cut(s) 19, 374, 578, 1117
AflII CTTAAG 1 cut(s) 797
AgeI ACCGGT 1 cut(s) 988
AgsI TTSAA 8 cut(s) 10, 109, 279, 523, 619, 652, 704, 1106
AjnI CCWGG 1 cut(s) 577
AjuI GAANNNNNNNTTGG 2 cut(s) 343, 375
AleI CACNNNNGTG 1 cut(s) 1034
AluBI AGCT 5 cut(s) 474, 489, 796, 874, 1138
AluI AGCT 5 cut(s) 474, 489, 796, 874, 1138
Alw26I GTCTC 1 cut(s) 842
AlwI GGATC 2 cut(s) 385, 398
AoxI GGCC 2 cut(s) 54, 1070
ApoI RAATTY 1 cut(s) 518
ArsI GACNNNNNNTTYG 2 cut(s) 873, 905
AsiGI ACCGGT 1 cut(s) 988
AsuHPI GGTGA 1 cut(s) 257
AsuII TTCGAA 1 cut(s) 879
BalI TGGCCA 1 cut(s) 1072
BamHI GGATCC 1 cut(s) 390
BarI GAAGNNNNNNTAC 2 cut(s) 178, 210
BauI CACGAG 1 cut(s) 1032
BccI CCATC 3 cut(s) 308, 341, 832
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BciT130I CCWGG 1 cut(s) 579
BciVI GTATCC 1 cut(s) 1012
BclI TGATCA 1 cut(s) 739
BcoDI GTCTC 1 cut(s) 842
BfaI CTAG 3 cut(s) 173, 348, 897
BfrI CTTAAG 1 cut(s) 797
BfuI GTATCC 1 cut(s) 1012
BmcAI AGTACT 1 cut(s) 171
Bme1390I CCNGG 1 cut(s) 579
BmiI GGNNCC 2 cut(s) 98, 392
BmrFI CCNGG 1 cut(s) 579
BmsI GCATC 2 cut(s) 213, 793
Bpu14I TTCGAA 1 cut(s) 879
BpuEI CTTGAG 1 cut(s) 109
Bsa29I ATCGAT 1 cut(s) 261
BsaAI YACGTR 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 1106
BsaI GGTCTC 1 cut(s) 842
BsaJI CCNNGG 1 cut(s) 1005
BsaWI WCCGGW 1 cut(s) 988
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 374, 578, 1117
Bse118I RCCGGY 2 cut(s) 398, 988
Bse1I ACTGG 3 cut(s) 379, 638, 1046
Bse8I GATNNNNATC 1 cut(s) 1106
BseBI CCWGG 1 cut(s) 579
BseCI ATCGAT 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 1005
BseGI GGATG 3 cut(s) 333, 808, 847
BseJI GATNNNNATC 1 cut(s) 1106
BseLI CCNNNNNNNGG 4 cut(s) 19, 374, 578, 1117
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 3 cut(s) 379, 638, 1046
BseRI GAGGAG 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 609
BshFI GGCC 2 cut(s) 56, 1072
BshTI ACCGGT 1 cut(s) 988
BshVI ATCGAT 1 cut(s) 261
BsiSI CCGG 3 cut(s) 53, 399, 989
BslI CCNNNNNNNGG 4 cut(s) 19, 374, 578, 1117
BsmAI GTCTC 1 cut(s) 842
BsnI GGCC 2 cut(s) 56, 1072
Bso31I GGTCTC 1 cut(s) 842
Bsp119I TTCGAA 1 cut(s) 879
Bsp143I GATC 2 cut(s) 390, 739
Bsp19I CCATGG 1 cut(s) 1005
BspACI CCGC 3 cut(s) 607, 915, 1016
BspANI GGCC 2 cut(s) 56, 1072
BspCNI CTCAG 1 cut(s) 192
BspDI ATCGAT 1 cut(s) 261
BspFNI CGCG 1 cut(s) 609
BspHI TCATGA 1 cut(s) 742
BspLI GGNNCC 2 cut(s) 98, 392
BspPI GGATC 2 cut(s) 385, 398
BspT104I TTCGAA 1 cut(s) 879
BspTI CTTAAG 1 cut(s) 797
BspTNI GGTCTC 1 cut(s) 842
BsrBI CCGCTC 1 cut(s) 915
BsrFI RCCGGY 2 cut(s) 398, 988
BsrI ACTGG 3 cut(s) 379, 638, 1046
BssAI RCCGGY 2 cut(s) 398, 988
BssECI CCNNGG 1 cut(s) 1005
BssMI GATC 2 cut(s) 390, 739
BssSI CACGAG 1 cut(s) 1032
BssT1I CCWWGG 1 cut(s) 1005
Bst2BI CACGAG 1 cut(s) 1032
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 6 cut(s) 101, 156, 169, 311, 422, 1000
Bst6I CTCTTC 2 cut(s) 228, 808
BstAFI CTTAAG 1 cut(s) 797
BstBAI YACGTR 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 879
BstDEI CTNAG 2 cut(s) 200, 251
BstDSI CCRYGG 1 cut(s) 1005
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 3 cut(s) 333, 808, 847
BstFNI CGCG 1 cut(s) 609
BstKTI GATC 2 cut(s) 393, 742
BstMAI GTCTC 1 cut(s) 842
BstMBI GATC 2 cut(s) 390, 739
BstMWI GCNNNNNNNGC 1 cut(s) 471
BstNI CCWGG 1 cut(s) 579
BstSCI CCNGG 1 cut(s) 577
BstUI CGCG 1 cut(s) 609
BstX2I RGATCY 1 cut(s) 390
BstYI RGATCY 1 cut(s) 390
Bsu15I ATCGAT 1 cut(s) 261
BsuI GTATCC 1 cut(s) 1012
BsuRI GGCC 2 cut(s) 56, 1072
BsuTUI ATCGAT 1 cut(s) 261
BtgI CCRYGG 1 cut(s) 1005
BtsCI GGATG 3 cut(s) 333, 808, 847
BtsIMutI CAGTG 3 cut(s) 197, 307, 731
CciI TCATGA 1 cut(s) 742
Cfr10I RCCGGY 2 cut(s) 398, 988
ClaI ATCGAT 1 cut(s) 261
Csp6I GTAC 3 cut(s) 170, 372, 894
CspAI ACCGGT 1 cut(s) 988
CspCI CAANNNNNGTGG 4 cut(s) 6, 41, 368, 403
CviAII CATG 3 cut(s) 549, 743, 1006
CviQI GTAC 3 cut(s) 170, 372, 894
DdeI CTNAG 2 cut(s) 200, 251
DpnI GATC 2 cut(s) 392, 741
DpnII GATC 2 cut(s) 390, 739
EaeI YGGCCR 2 cut(s) 54, 1070
Eam1104I CTCTTC 2 cut(s) 228, 808
EarI CTCTTC 2 cut(s) 228, 808
EciI GGCGGA 1 cut(s) 1031
Eco130I CCWWGG 1 cut(s) 1005
Eco31I GGTCTC 1 cut(s) 842
Eco57I CTGAAG 1 cut(s) 252
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 577
EcoT14I CCWWGG 1 cut(s) 1005
ErhI CCWWGG 1 cut(s) 1005
FaeI CATG 3 cut(s) 552, 746, 1009
FalI AAGNNNNNCTT 2 cut(s) 762, 794
FatI CATG 3 cut(s) 548, 742, 1005
FbaI TGATCA 1 cut(s) 739
FblI GTMKAC 2 cut(s) 919, 933
FokI GGATG 3 cut(s) 320, 815, 854
FspBI CTAG 3 cut(s) 173, 348, 897
HaeIII GGCC 2 cut(s) 56, 1072
HapII CCGG 3 cut(s) 53, 399, 989
Hin1II CATG 3 cut(s) 552, 746, 1009
HincII GTYRAC 1 cut(s) 934
HindII GTYRAC 1 cut(s) 934
HindIII AAGCTT 1 cut(s) 872
HinfI GANTC 5 cut(s) 351, 364, 556, 574, 1102
HpaII CCGG 3 cut(s) 53, 399, 989
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 5 cut(s) 240, 248, 372, 920, 934
Hpy188I TCNGA 5 cut(s) 232, 573, 601, 739, 1120
Hpy188III TCNNGA 5 cut(s) 126, 410, 425, 560, 743
Hpy8I GTNNAC 5 cut(s) 240, 248, 372, 920, 934
Hpy99I CGWCG 2 cut(s) 416, 938
HpyAV CCTTC 3 cut(s) 23, 237, 613
HpyCH4III ACNGT 6 cut(s) 101, 156, 169, 311, 422, 1000
HpyCH4IV ACGT 2 cut(s) 83, 706
HpyCH4V TGCA 3 cut(s) 87, 330, 806
HpyF10VI GCNNNNNNNGC 1 cut(s) 471
HpyF3I CTNAG 2 cut(s) 200, 251
HpySE526I ACGT 2 cut(s) 83, 706
Hsp92II CATG 3 cut(s) 552, 746, 1009
Ksp22I TGATCA 1 cut(s) 739
Kzo9I GATC 2 cut(s) 390, 739
LmnI GCTCC 1 cut(s) 912
LweI GCATC 2 cut(s) 213, 793
MaeI CTAG 3 cut(s) 173, 348, 897
MaeII ACGT 2 cut(s) 83, 706
MaeIII GTNAC 2 cut(s) 565, 1051
MalI GATC 2 cut(s) 392, 741
MbiI CCGCTC 1 cut(s) 915
MboI GATC 2 cut(s) 390, 739
MboII GAAGA 5 cut(s) 186, 245, 782, 825, 958
MflI RGATCY 1 cut(s) 390
MlsI TGGCCA 1 cut(s) 1072
MluCI AATT 4 cut(s) 71, 274, 502, 518
MluNI TGGCCA 1 cut(s) 1072
MmeI TCCRAC 2 cut(s) 745, 1135
MnlI CCTC 6 cut(s) 25, 169, 546, 931, 1006, 1114
Mox20I TGGCCA 1 cut(s) 1072
MscI TGGCCA 1 cut(s) 1072
MseI TTAA 2 cut(s) 671, 798
MslI CAYNNNNRTG 3 cut(s) 293, 312, 1034
Msp20I TGGCCA 1 cut(s) 1072
MspCI CTTAAG 1 cut(s) 797
MspI CCGG 3 cut(s) 53, 399, 989
MspR9I CCNGG 1 cut(s) 579
MvaI CCWGG 1 cut(s) 579
MvnI CGCG 1 cut(s) 609
MwoI GCNNNNNNNGC 1 cut(s) 471
NcoI CCATGG 1 cut(s) 1005
NdeII GATC 2 cut(s) 390, 739
NlaIII CATG 3 cut(s) 552, 746, 1009
NlaIV GGNNCC 2 cut(s) 98, 392
NmuCI GTSAC 2 cut(s) 565, 1051
NspV TTCGAA 1 cut(s) 879
OliI CACNNNNGTG 1 cut(s) 1034
PagI TCATGA 1 cut(s) 742
PfeI GAWTC 5 cut(s) 351, 364, 556, 574, 1102
PinAI ACCGGT 1 cut(s) 988
Ppu21I YACGTR 1 cut(s) 84
PsiI TTATAA 3 cut(s) 293, 501, 995
Psp6I CCWGG 1 cut(s) 577
PspGI CCWGG 1 cut(s) 577
PspN4I GGNNCC 2 cut(s) 98, 392
PsuI RGATCY 1 cut(s) 390
RsaI GTAC 3 cut(s) 171, 373, 895
RsaNI GTAC 3 cut(s) 170, 372, 894
RseI CAYNNNNRTG 3 cut(s) 293, 312, 1034
SalI GTCGAC 1 cut(s) 932
SaqAI TTAA 2 cut(s) 671, 798
Sau3AI GATC 2 cut(s) 390, 739
ScaI AGTACT 1 cut(s) 171
ScrFI CCNGG 1 cut(s) 579
SfaNI GCATC 2 cut(s) 213, 793
SfuI TTCGAA 1 cut(s) 879
SmiMI CAYNNNNRTG 3 cut(s) 293, 312, 1034
SmlI CTYRAG 2 cut(s) 124, 797
SmoI CTYRAG 2 cut(s) 124, 797
Sse9I AATT 4 cut(s) 71, 274, 502, 518
SsiI CCGC 3 cut(s) 607, 915, 1016
SspI AATATT 1 cut(s) 303
SspMI CTAG 3 cut(s) 173, 348, 897
StyD4I CCNGG 1 cut(s) 577
StyI CCWWGG 1 cut(s) 1005
TaaI ACNGT 6 cut(s) 101, 156, 169, 311, 422, 1000
TaiI ACGT 2 cut(s) 86, 709
TaqI TCGA 4 cut(s) 261, 411, 879, 933
TasI AATT 4 cut(s) 71, 274, 502, 518
TatI WGTACW 2 cut(s) 169, 371
TfiI GAWTC 5 cut(s) 351, 364, 556, 574, 1102
Tru1I TTAA 2 cut(s) 671, 798
Tru9I TTAA 2 cut(s) 671, 798
TscAI CASTG 3 cut(s) 204, 314, 731
TseFI GTSAC 2 cut(s) 565, 1051
Tsp45I GTSAC 2 cut(s) 565, 1051
TspDTI ATGAA 2 cut(s) 311, 1053
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 3 cut(s) 204, 314, 731
Vha464I CTTAAG 1 cut(s) 797
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 1 cut(s) 518
XmiI GTMKAC 2 cut(s) 919, 933
XspI CTAG 3 cut(s) 173, 348, 897
ZrmI AGTACT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.