AT3G23260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
8313334 .. 8314575
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23260.1

Sequence Viewer

Length: 1089 bp
ATGGAGTGGAGAAGCCTTCCGGTGGAATTGCAAGAAGAGATACTTTCTAGGGTTCCGGCTAAATATTTGGCACGATTGCGATCAACATCGAAACAATGGAACGCTCTATCGAAAACTGGGAGTTTTGCTAAGAAGCACTCTGCTAATGCAACAAAGGAGCCTCTGATTATCATGTTGAAGGATTCTAGGGTTTACTTAGCAAGTGTCAATCTCCATGGAGTTCACAACAACGTTGCTCAATCTTTTGAGTTAGGATCTCGATTGTACCTTAAAGATCCGCACATTTCTAACGTCTTTCACTGTGATGGCTTGTTATTGCTCTGCTCCATTAAGGAGAATACACTCGAGGTTTGGAATCCATGTTCAGGAGAAGCCAAGTTAATTAAACCTAGACACAGCTACTACAAGGAATCAGACTTTTATGCTCTTGGTTATGACAACAAATCCTCCTGCAAGAAATACAAAGTCTTGAGGGTGATTAGTCAAGTCCATGTTCAAGGTGACTTCAAGATTGAGTACGAAATCTATGACTTCACCAATGATTCTTGGAGGGTTCATGGTGCGACTACCGAACTGTCTATAAGACAAAAGCATCCCGTGTCTGTGAAAGGAAGTACTTATTGGGTTGTTCGTAATAGGTATTTTCCATATAAATACTTCCTAAGTTTTGATTTTTCAACCGAGAGATTTCAAAGTCTGTCTCTTCCTCAGCCGTTTCCTTATCTGGTTACGGATTTATCAGTGGTTAGAGAAGAGCAACTCTGTCTGTTTGGTTATTATAATTGGTCAACAACTTCAGAAGACTTAAATGTATGGGTGACAACTAGTCTCGGATCAGTCGTGTCATGGAGCAAGTTCTTAACAATACAAATCATTAAGCCGAGAGTGGATATGTTTGATTATGGGATGAGTTTCTTGGTCGACGAGCAAAACAAATCTTTAGTGTGTTGGATCTCCCAAAAAGTCTTACACATTGTGGGAGAAATTTATCACATACAAGATTTGGATGATCATGGTAGAGATTCTGCGTTAAGATCATCATGCTCAGTTCTTATGAATTATGTTCCAAGTTTAGCCCAAATCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

362

Amino Acids

41.91

Weight (kDa)

8.51

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 40 2.8e-09 F-box domain
F-box-like PF12937 3 - 41 1.8e-06 F-box-like
FBA_1 PF07734 56 - 361 3.7e-82 F-box associated beta propeller domain
FBA_3 PF08268 101 - 239 7.5e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 780
AccI GTMKAC 1 cut(s) 921
AciI CCGC 1 cut(s) 278
AclI AACGTT 1 cut(s) 231
AclWI GGATC 4 cut(s) 262, 269, 841, 959
AcsI RAATTY 1 cut(s) 984
AcuI CTGAAG 1 cut(s) 780
AdeI CACNNNGTG 1 cut(s) 976
AfaI GTAC 3 cut(s) 266, 518, 616
AfiI CCNNNNNNNGG 2 cut(s) 22, 365
AgsI TTSAA 5 cut(s) 178, 497, 508, 678, 692
AhdI GACNNNNNGTC 1 cut(s) 825
AhlI ACTAGT 1 cut(s) 824
AjuI GAANNNNNNNTTGG 2 cut(s) 604, 636
AloI GAACNNNNNNTCC 2 cut(s) 346, 378
AluBI AGCT 1 cut(s) 399
AluI AGCT 1 cut(s) 399
Alw26I GTCTC 2 cut(s) 705, 833
AlwI GGATC 4 cut(s) 262, 269, 841, 959
Ama87I CYCGRG 1 cut(s) 344
ApoI RAATTY 1 cut(s) 984
AsuHPI GGTGA 4 cut(s) 487, 512, 526, 829
AvaI CYCGRG 1 cut(s) 344
BbsI GAAGAC 1 cut(s) 807
BbvCI CCTCAGC 1 cut(s) 708
BccI CCATC 1 cut(s) 299
BceAI ACGGC 1 cut(s) 697
BclI TGATCA 1 cut(s) 1009
BcoDI GTCTC 2 cut(s) 705, 833
BcuI ACTAGT 1 cut(s) 824
BfaI CTAG 4 cut(s) 48, 186, 390, 825
BmcAI AGTACT 1 cut(s) 616
BmeRI GACNNNNNGTC 1 cut(s) 825
BmeT110I CYCGRG 1 cut(s) 344
BmiI GGNNCC 2 cut(s) 54, 159
BmrI ACTGGG 1 cut(s) 126
BmsI GCATC 1 cut(s) 601
BmuI ACTGGG 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 807
Bpu10I CCTNAGC 1 cut(s) 708
BpuEI CTTGAG 1 cut(s) 490
BsaBI GATNNNNATC 2 cut(s) 79, 85
BsaJI CCNNGG 1 cut(s) 214
BsaWI WCCGGW 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 365
Bse1I ACTGG 1 cut(s) 121
Bse8I GATNNNNATC 2 cut(s) 79, 85
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 3 cut(s) 592, 912, 1012
BseJI GATNNNNATC 2 cut(s) 79, 85
BseLI CCNNNNNNNGG 2 cut(s) 22, 365
BseMII CTCAG 2 cut(s) 722, 1059
BseNI ACTGG 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 2 cut(s) 20, 56
BslI CCNNNNNNNGG 2 cut(s) 22, 365
BsmAI GTCTC 2 cut(s) 705, 833
BsoBI CYCGRG 1 cut(s) 344
Bsp143I GATC 7 cut(s) 80, 254, 274, 833, 951, 1009, 1034
Bsp19I CCATGG 1 cut(s) 214
BspACI CCGC 1 cut(s) 278
BspCNI CTCAG 2 cut(s) 721, 1058
BspLI GGNNCC 2 cut(s) 54, 159
BspPI GGATC 4 cut(s) 262, 269, 841, 959
BspQI GCTCTTC 1 cut(s) 747
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 7 cut(s) 80, 254, 274, 833, 951, 1009, 1034
BssT1I CCWWGG 1 cut(s) 214
Bst4CI ACNGT 2 cut(s) 302, 576
Bst6I CTCTTC 3 cut(s) 30, 708, 747
BstDEI CTNAG 5 cut(s) 129, 196, 662, 708, 1045
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 3 cut(s) 592, 912, 1012
BstKTI GATC 7 cut(s) 83, 257, 277, 836, 954, 1012, 1037
BstMAI GTCTC 2 cut(s) 705, 833
BstMBI GATC 7 cut(s) 80, 254, 274, 833, 951, 1009, 1034
BstV2I GAAGAC 1 cut(s) 807
BstX2I RGATCY 3 cut(s) 254, 274, 951
BstYI RGATCY 3 cut(s) 254, 274, 951
BtgI CCRYGG 1 cut(s) 214
BtsCI GGATG 3 cut(s) 592, 912, 1012
BtsIMutI CAGTG 2 cut(s) 298, 747
Csp6I GTAC 3 cut(s) 265, 517, 615
CviAII CATG 8 cut(s) 172, 215, 360, 491, 557, 846, 1013, 1041
CviJI RGCY 9 cut(s) 15, 59, 160, 309, 374, 399, 712, 880, 1076
CviKI_1 RGCY 9 cut(s) 15, 59, 160, 309, 374, 399, 712, 880, 1076
CviQI GTAC 3 cut(s) 265, 517, 615
DdeI CTNAG 5 cut(s) 129, 196, 662, 708, 1045
DpnI GATC 7 cut(s) 82, 256, 276, 835, 953, 1011, 1036
DpnII GATC 7 cut(s) 80, 254, 274, 833, 951, 1009, 1034
DraIII CACNNNGTG 1 cut(s) 976
DriI GACNNNNNGTC 1 cut(s) 825
Eam1104I CTCTTC 3 cut(s) 30, 708, 747
Eam1105I GACNNNNNGTC 1 cut(s) 825
EarI CTCTTC 3 cut(s) 30, 708, 747
Eco130I CCWWGG 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 780
Eco88I CYCGRG 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 8 cut(s) 175, 218, 363, 494, 560, 849, 1016, 1044
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 8 cut(s) 171, 214, 359, 490, 556, 845, 1012, 1040
FbaI TGATCA 1 cut(s) 1009
FblI GTMKAC 1 cut(s) 921
FokI GGATG 3 cut(s) 579, 919, 1019
FspBI CTAG 4 cut(s) 48, 186, 390, 825
HapII CCGG 2 cut(s) 20, 56
Hin1II CATG 8 cut(s) 175, 218, 363, 494, 560, 849, 1016, 1044
HincII GTYRAC 2 cut(s) 789, 922
HindII GTYRAC 2 cut(s) 789, 922
HinfI GANTC 5 cut(s) 182, 355, 410, 542, 1022
HpaII CCGG 2 cut(s) 20, 56
HphI GGTGA 4 cut(s) 487, 512, 526, 829
Hpy166II GTNNAC 4 cut(s) 193, 223, 789, 922
Hpy188I TCNGA 4 cut(s) 165, 415, 799, 833
Hpy188III TCNNGA 4 cut(s) 258, 366, 469, 508
Hpy8I GTNNAC 4 cut(s) 193, 223, 789, 922
Hpy99I CGWCG 1 cut(s) 926
HpyAV CCTTC 2 cut(s) 26, 172
HpyCH4III ACNGT 2 cut(s) 302, 576
HpyCH4IV ACGT 2 cut(s) 231, 291
HpyCH4V TGCA 3 cut(s) 31, 149, 453
HpyF3I CTNAG 5 cut(s) 129, 196, 662, 708, 1045
HpySE526I ACGT 2 cut(s) 231, 291
Hsp92II CATG 8 cut(s) 175, 218, 363, 494, 560, 849, 1016, 1044
Ksp22I TGATCA 1 cut(s) 1009
Kzo9I GATC 7 cut(s) 80, 254, 274, 833, 951, 1009, 1034
LguI GCTCTTC 1 cut(s) 747
LmnI GCTCC 3 cut(s) 157, 329, 849
LpnPI CCDG 6 cut(s) 33, 69, 102, 351, 463, 710
LweI GCATC 1 cut(s) 601
MaeI CTAG 4 cut(s) 48, 186, 390, 825
MaeII ACGT 2 cut(s) 231, 291
MaeIII GTNAC 3 cut(s) 500, 727, 817
MalI GATC 7 cut(s) 82, 256, 276, 835, 953, 1011, 1036
MboI GATC 7 cut(s) 80, 254, 274, 833, 951, 1009, 1034
MboII GAAGA 4 cut(s) 47, 695, 764, 812
MflI RGATCY 3 cut(s) 254, 274, 951
MluCI AATT 5 cut(s) 26, 381, 781, 984, 1057
MmeI TCCRAC 1 cut(s) 929
MnlI CCTC 6 cut(s) 171, 340, 457, 465, 543, 717
MseI TTAA 8 cut(s) 270, 330, 380, 384, 806, 860, 876, 1031
MslI CAYNNNNRTG 1 cut(s) 303
MspI CCGG 2 cut(s) 20, 56
NcoI CCATGG 1 cut(s) 214
NdeII GATC 7 cut(s) 80, 254, 274, 833, 951, 1009, 1034
NlaIII CATG 8 cut(s) 175, 218, 363, 494, 560, 849, 1016, 1044
NlaIV GGNNCC 2 cut(s) 54, 159
NmeAIII GCCGAG 1 cut(s) 906
NmuCI GTSAC 2 cut(s) 500, 817
PacI TTAATTAA 1 cut(s) 384
PaeR7I CTCGAG 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 747
PcsI WCGNNNNNNNCGW 1 cut(s) 837
PfeI GAWTC 5 cut(s) 182, 355, 410, 542, 1022
PsiI TTATAA 1 cut(s) 780
Psp1406I AACGTT 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 54, 159
PspXI VCTCGAGB 1 cut(s) 344
PsuI RGATCY 3 cut(s) 254, 274, 951
RsaI GTAC 3 cut(s) 266, 518, 616
RsaNI GTAC 3 cut(s) 265, 517, 615
RseI CAYNNNNRTG 1 cut(s) 303
SalI GTCGAC 1 cut(s) 920
SapI GCTCTTC 1 cut(s) 747
SaqAI TTAA 8 cut(s) 270, 330, 380, 384, 806, 860, 876, 1031
Sau3AI GATC 7 cut(s) 80, 254, 274, 833, 951, 1009, 1034
ScaI AGTACT 1 cut(s) 616
SetI ASST 8 cut(s) 234, 270, 294, 351, 391, 401, 502, 641
SfaNI GCATC 1 cut(s) 601
Sfr274I CTCGAG 1 cut(s) 344
SlaI CTCGAG 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 2 cut(s) 344, 469
SmoI CTYRAG 2 cut(s) 344, 469
SpeI ACTAGT 1 cut(s) 824
Sse9I AATT 5 cut(s) 26, 381, 781, 984, 1057
SsiI CCGC 1 cut(s) 278
SspI AATATT 1 cut(s) 65
SspMI CTAG 4 cut(s) 48, 186, 390, 825
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 2 cut(s) 302, 576
TaiI ACGT 2 cut(s) 234, 294
TaqI TCGA 5 cut(s) 89, 110, 259, 345, 921
TasI AATT 5 cut(s) 26, 381, 781, 984, 1057
TatI WGTACW 1 cut(s) 614
TfiI GAWTC 5 cut(s) 182, 355, 410, 542, 1022
Tru1I TTAA 8 cut(s) 270, 330, 380, 384, 806, 860, 876, 1031
Tru9I TTAA 8 cut(s) 270, 330, 380, 384, 806, 860, 876, 1031
TscAI CASTG 2 cut(s) 305, 747
TseFI GTSAC 2 cut(s) 500, 817
Tsp45I GTSAC 2 cut(s) 500, 817
TspDTI ATGAA 2 cut(s) 545, 1070
TspGWI ACGGA 1 cut(s) 746
TspRI CASTG 2 cut(s) 305, 747
XapI RAATTY 1 cut(s) 984
XhoI CTCGAG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 921
XspI CTAG 4 cut(s) 48, 186, 390, 825
ZrmI AGTACT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.