AT3G59590

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
22014167 .. 22015768
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59590.1

Sequence Viewer

Length: 1365 bp
ATGGAACTCTCTTTCAAACGAGAGAAGATTTGCTCGGTGGAAGTTAATCTTGATGTTCCATCCATAGAGGTGCATAGCCATAACTTACCCTCATATATTCCCGGTTATAATGGTTTCTTCATGACGGTCGAATATTGCGACGGGTTAGTGGTTTATGCTACCGAGAACGGGATTGGGATATGCAACCCATTGTTGAGACAGATTAGATGGATCAAATCCAAAGTGAATTATCGTTACAATGGGGTGGGATACGACAATTCTAGACCCGAAAATCATTACAAGATCTTTGAGTCTTGCCCCTATAGCGATACAACCGTGAAAGCTAGTATCACCGAGTTTGTATCCGATGCATGGATTTCGAAACCGTACGAGTTTGCATATGATTGGGATTTTATGTCGTCCTATAGTGTATCATTGAATGGAGCTTTGTATTGGGTTGCTTTCCATATGGCGTCTGATGACCAGTTTATTCAAAGCTTTGATTTTTCTACGGAGAAATTTGAACCCTATTGTCTCTTGCCTAATAAAAAATGTGATCCAAGCAATGCTAGGTCCCTTGCAGTTTTTAGGGGAGATCGATTTTCGTATTTAGAGCAAAACTATGAGACAAGGAATATAGAGATTTGGGTAACAAAAAAAGAGATTAAAATTGAGAATGGAAAGGCTGTGGAGTGGATGAACTTGATGAAAGTGTCAGTTCCTAAATGGTCGAGTTTAAGAGAAAAGGCTTGCATTTATATTGCCAAGGGAGATAAGTTCCATGAAATTATAATAAACGATTTGGTTGAGTATCCTACTCGTCATCACCGTACCTATGTTCCTAGTTTGGTCCCAGTTCCAACGTTCACGATGAGCAATAGAAGTAAAACGCAGCAGGTTGAGTCCCGCTTCACACCCCCTAGAGGAATACAAGCGAGCGATGGAGGAAACGAGTGGGACGACGGCATCTTCCACAATGTGAAGAAAATAAATGTAGGAGTAAATGATTTTGACACGGTCTTTGTCAAGTTTCACTACTCCAAATATAACCGGATTGAAGCCGGAGCAGGTCATGGAAATGCGACAACACATAATCCAGACGACGAAATTATGATCGCTGGAGGCGACTACATTGAAGCCGTCGAGGGGACCTACACTGAAAGCCATATCACCTCCATTACATTTCGGATGCGCAAGGGAGACATGATGCCACAGTACGGACGCTTGAACGGGACGCCCTTCTCGCTTCGAGGAGAACGAGGCTCCAAGGCCATCGGGTTTTACGGAAGAAGCTCTGGTGTCCACCTCACTGCTCTCGGCGTCCACTTCTCTCCACCCCCTCTATATTATTCGTTTCCTAACCATTCACCAGTTTTTAATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

454

Amino Acids

52.02

Weight (kDa)

6.44

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 4 - 233 5e-55 F-box associated beta propeller domain
FBA_3 PF08268 25 - 257 2e-11 F-box associated beta propeller domain
Jacalin PF01419 305 - 435 6.4e-21 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 108, 770
Acc16I TGCGCA 1 cut(s) 1172
Acc36I ACCTGC 2 cut(s) 865, 1037
AciI CCGC 1 cut(s) 886
AclI AACGTT 1 cut(s) 842
AclWI GGATC 2 cut(s) 218, 530
AcsI RAATTY 1 cut(s) 497
AcyI GRCGYC 3 cut(s) 452, 1214, 1299
AdeI CACNNNGTG 1 cut(s) 958
AfaI GTAC 3 cut(s) 368, 811, 1196
AfiI CCNNNNNNNGG 5 cut(s) 168, 351, 902, 1125, 1196
AgsI TTSAA 7 cut(s) 16, 418, 473, 503, 1037, 1115, 1207
AluBI AGCT 4 cut(s) 323, 425, 477, 1272
AluI AGCT 4 cut(s) 323, 425, 477, 1272
Alw26I GTCTC 4 cut(s) 190, 518, 599, 1173
AlwI GGATC 2 cut(s) 218, 530
AoxI GGCC 1 cut(s) 1248
ApeKI GCWGC 1 cut(s) 871
ApoI RAATTY 1 cut(s) 497
ArsI GACNNNNNNTTYG 2 cut(s) 983, 1015
AspLEI GCGC 1 cut(s) 1173
AspS9I GGNCC 3 cut(s) 552, 829, 1128
AsuC2I CCSGG 1 cut(s) 102
AsuHPI GGTGA 4 cut(s) 322, 797, 1141, 1338
AsuII TTCGAA 1 cut(s) 359
AvaII GGWCC 3 cut(s) 552, 829, 1128
BaeI ACNNNNGTAYC 2 cut(s) 300, 333
BbvI GCAGC 1 cut(s) 883
BccI CCATC 4 cut(s) 67, 201, 914, 1259
BceAI ACGGC 2 cut(s) 958, 1103
BcgI CGANNNNNNTGC 2 cut(s) 339, 373
BciVI GTATCC 3 cut(s) 242, 352, 801
BcnI CCSGG 1 cut(s) 102
BcoDI GTCTC 4 cut(s) 190, 518, 599, 1173
BfaI CTAG 5 cut(s) 261, 324, 549, 822, 900
BfmI CTRYAG 2 cut(s) 301, 403
BfuAI ACCTGC 2 cut(s) 865, 1037
BfuI GTATCC 3 cut(s) 242, 352, 801
BglII AGATCT 1 cut(s) 282
BisI GCNGC 1 cut(s) 872
BlsI GCNGC 1 cut(s) 873
Bme1390I CCNGG 1 cut(s) 102
Bme18I GGWCC 3 cut(s) 552, 829, 1128
BmgT120I GGNCC 3 cut(s) 552, 829, 1128
BmiI GGNNCC 4 cut(s) 554, 831, 1129, 1243
BmrFI CCNGG 1 cut(s) 102
BmrI ACTGGG 1 cut(s) 827
BmsI GCATC 4 cut(s) 337, 954, 1158, 1176
BmuI ACTGGG 1 cut(s) 827
BpmI CTGGAG 1 cut(s) 1119
Bpu14I TTCGAA 1 cut(s) 359
BpuMI CCSGG 1 cut(s) 102
Bsa29I ATCGAT 1 cut(s) 577
BsaHI GRCGYC 3 cut(s) 452, 1214, 1299
BsaJI CCNNGG 2 cut(s) 744, 1245
BsaWI WCCGGW 1 cut(s) 1029
Bsc4I CCNNNNNNNGG 5 cut(s) 168, 351, 902, 1125, 1196
Bse1I ACTGG 3 cut(s) 463, 833, 1349
Bse3DI GCAATG 1 cut(s) 550
BseCI ATCGAT 1 cut(s) 577
BseDI CCNNGG 2 cut(s) 744, 1245
BseGI GGATG 3 cut(s) 59, 681, 1173
BseLI CCNNNNNNNGG 5 cut(s) 168, 351, 902, 1125, 1196
BseMI GCAATG 1 cut(s) 550
BseNI ACTGG 3 cut(s) 463, 833, 1349
BseRI GAGGAG 1 cut(s) 1245
BseXI GCAGC 1 cut(s) 883
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 1 cut(s) 1250
BshVI ATCGAT 1 cut(s) 577
BsiEI CGRYCG 1 cut(s) 129
BsiSI CCGG 3 cut(s) 102, 1030, 1041
BsiWI CGTACG 1 cut(s) 366
BslFI GGGAC 6 cut(s) 538, 815, 868, 950, 1141, 1225
BslI CCNNNNNNNGG 5 cut(s) 168, 351, 902, 1125, 1196
BsmAI GTCTC 4 cut(s) 190, 518, 599, 1173
BsmFI GGGAC 6 cut(s) 538, 815, 868, 950, 1141, 1225
BsnI GGCC 1 cut(s) 1250
Bsp119I TTCGAA 1 cut(s) 359
Bsp143I GATC 5 cut(s) 210, 282, 535, 574, 1092
BspACI CCGC 1 cut(s) 886
BspANI GGCC 1 cut(s) 1250
BspDI ATCGAT 1 cut(s) 577
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 4 cut(s) 554, 831, 1129, 1243
BspMI ACCTGC 2 cut(s) 865, 1037
BspPI GGATC 2 cut(s) 218, 530
BspT104I TTCGAA 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 550
BsrI ACTGG 3 cut(s) 463, 833, 1349
BssECI CCNNGG 2 cut(s) 744, 1245
BssMI GATC 5 cut(s) 210, 282, 535, 574, 1092
BssNI GRCGYC 3 cut(s) 452, 1214, 1299
BssT1I CCWWGG 2 cut(s) 744, 1245
Bst4CI ACNGT 6 cut(s) 127, 316, 366, 809, 997, 1194
BstACI GRCGYC 3 cut(s) 452, 1214, 1299
BstBI TTCGAA 1 cut(s) 359
BstC8I GCNNGC 2 cut(s) 730, 916
BstF5I GGATG 3 cut(s) 59, 681, 1173
BstHHI GCGC 1 cut(s) 1173
BstKTI GATC 5 cut(s) 213, 285, 538, 577, 1095
BstMAI GTCTC 4 cut(s) 190, 518, 599, 1173
BstMBI GATC 5 cut(s) 210, 282, 535, 574, 1092
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 2 cut(s) 303, 1222
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 2 cut(s) 301, 403
BstV1I GCAGC 1 cut(s) 883
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
Bsu15I ATCGAT 1 cut(s) 577
BsuI GTATCC 3 cut(s) 242, 352, 801
BsuRI GGCC 1 cut(s) 1250
BsuTUI ATCGAT 1 cut(s) 577
BtgZI GCGATG 1 cut(s) 933
BtsCI GGATG 3 cut(s) 59, 681, 1173
BtsI GCAGTG 1 cut(s) 1287
BtsIMutI CAGTG 2 cut(s) 1134, 1287
BveI ACCTGC 2 cut(s) 865, 1037
Cac8I GCNNGC 2 cut(s) 730, 916
CciI TCATGA 1 cut(s) 120
CfoI GCGC 1 cut(s) 1173
Cfr13I GGNCC 3 cut(s) 552, 829, 1128
ClaI ATCGAT 1 cut(s) 577
CseI GACGC 4 cut(s) 441, 1209, 1222, 1288
Csp6I GTAC 3 cut(s) 367, 810, 1195
CviAII CATG 5 cut(s) 121, 351, 761, 1052, 1183
CviQI GTAC 3 cut(s) 367, 810, 1195
DpnI GATC 5 cut(s) 212, 284, 537, 576, 1094
DpnII GATC 5 cut(s) 210, 282, 535, 574, 1092
DraIII CACNNNGTG 1 cut(s) 958
Eco130I CCWWGG 2 cut(s) 744, 1245
Eco47I GGWCC 3 cut(s) 552, 829, 1128
EcoO109I RGGNCCY 2 cut(s) 552, 1128
EcoT14I CCWWGG 2 cut(s) 744, 1245
EcoT22I ATGCAT 1 cut(s) 352
ErhI CCWWGG 2 cut(s) 744, 1245
FaeI CATG 5 cut(s) 124, 354, 764, 1055, 1186
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FaqI GGGAC 6 cut(s) 538, 815, 868, 950, 1141, 1225
FatI CATG 5 cut(s) 120, 350, 760, 1051, 1182
FauI CCCGC 1 cut(s) 893
FauNDI CATATG 2 cut(s) 379, 447
Fnu4HI GCNGC 1 cut(s) 872
FokI GGATG 3 cut(s) 46, 688, 1180
Fsp4HI GCNGC 1 cut(s) 872
FspBI CTAG 5 cut(s) 261, 324, 549, 822, 900
FspI TGCGCA 1 cut(s) 1172
GlaI GCGC 1 cut(s) 1172
GluI GCNGC 1 cut(s) 872
GsuI CTGGAG 1 cut(s) 1119
HaeIII GGCC 1 cut(s) 1250
HapII CCGG 3 cut(s) 102, 1030, 1041
HgaI GACGC 4 cut(s) 441, 1209, 1222, 1288
HhaI GCGC 1 cut(s) 1173
Hin1I GRCGYC 3 cut(s) 452, 1214, 1299
Hin1II CATG 5 cut(s) 124, 354, 764, 1055, 1186
Hin6I GCGC 1 cut(s) 1171
HinP1I GCGC 1 cut(s) 1171
HindIII AAGCTT 1 cut(s) 475
HinfI GANTC 2 cut(s) 290, 881
HpaII CCGG 3 cut(s) 102, 1030, 1041
HphI GGTGA 4 cut(s) 322, 797, 1141, 1338
Hpy166II GTNNAC 3 cut(s) 846, 1282, 1303
Hpy188I TCNGA 3 cut(s) 346, 457, 1167
Hpy188III TCNNGA 5 cut(s) 50, 121, 261, 847, 1076
Hpy8I GTNNAC 3 cut(s) 846, 1282, 1303
Hpy99I CGWCG 4 cut(s) 143, 944, 1085, 1124
HpyAV CCTTC 1 cut(s) 1228
HpyCH4III ACNGT 6 cut(s) 127, 316, 366, 809, 997, 1194
HpyCH4IV ACGT 1 cut(s) 842
HpyCH4V TGCA 6 cut(s) 73, 183, 350, 377, 560, 732
HpyF10VI GCNNNNNNNGC 2 cut(s) 303, 1222
HpySE526I ACGT 1 cut(s) 842
Hsp92I GRCGYC 3 cut(s) 452, 1214, 1299
Hsp92II CATG 5 cut(s) 124, 354, 764, 1055, 1186
HspAI GCGC 1 cut(s) 1171
Kzo9I GATC 5 cut(s) 210, 282, 535, 574, 1092
LmnI GCTCC 3 cut(s) 422, 1043, 1247
Lsp1109I GCAGC 1 cut(s) 883
LweI GCATC 4 cut(s) 337, 954, 1158, 1176
MaeI CTAG 5 cut(s) 261, 324, 549, 822, 900
MaeII ACGT 1 cut(s) 842
MaeIII GTNAC 2 cut(s) 233, 628
MalI GATC 5 cut(s) 212, 284, 537, 576, 1094
MboI GATC 5 cut(s) 210, 282, 535, 574, 1092
MboII GAAGA 5 cut(s) 37, 109, 940, 973, 1278
MflI RGATCY 1 cut(s) 282
MluCI AATT 7 cut(s) 226, 256, 497, 648, 765, 1086, 1357
MlyI GAGTC 2 cut(s) 299, 890
MmeI TCCRAC 1 cut(s) 863
Mph1103I ATGCAT 1 cut(s) 352
MseI TTAA 5 cut(s) 45, 645, 716, 1356, 1363
MslI CAYNNNNRTG 2 cut(s) 68, 1056
MspI CCGG 3 cut(s) 102, 1030, 1041
MspR9I CCNGG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 303, 1222
NciI CCSGG 1 cut(s) 102
NdeI CATATG 2 cut(s) 379, 447
NdeII GATC 5 cut(s) 210, 282, 535, 574, 1092
NlaIII CATG 5 cut(s) 124, 354, 764, 1055, 1186
NlaIV GGNNCC 4 cut(s) 554, 831, 1129, 1243
NmeAIII GCCGAG 1 cut(s) 1275
NsbI TGCGCA 1 cut(s) 1172
NsiI ATGCAT 1 cut(s) 352
NspV TTCGAA 1 cut(s) 359
PagI TCATGA 1 cut(s) 120
PcsI WCGNNNNNNNCGW 5 cut(s) 135, 805, 936, 1101, 1234
Pfl23II CGTACG 1 cut(s) 366
PflFI GACNNNGTC 1 cut(s) 995
PkrI GCNGC 1 cut(s) 873
PleI GAGTC 2 cut(s) 298, 889
PpsI GAGTC 2 cut(s) 298, 889
PpuMI RGGWCCY 2 cut(s) 552, 1128
PsiI TTATAA 2 cut(s) 108, 770
Psp1406I AACGTT 1 cut(s) 842
Psp5II RGGWCCY 2 cut(s) 552, 1128
PspLI CGTACG 1 cut(s) 366
PspN4I GGNNCC 4 cut(s) 554, 831, 1129, 1243
PspPI GGNCC 3 cut(s) 552, 829, 1128
PspPPI RGGWCCY 2 cut(s) 552, 1128
PsuI RGATCY 1 cut(s) 282
PsyI GACNNNGTC 1 cut(s) 995
RsaI GTAC 3 cut(s) 368, 811, 1196
RsaNI GTAC 3 cut(s) 367, 810, 1195
RseI CAYNNNNRTG 2 cut(s) 68, 1056
SaqAI TTAA 5 cut(s) 45, 645, 716, 1356, 1363
SatI GCNGC 1 cut(s) 872
Sau3AI GATC 5 cut(s) 210, 282, 535, 574, 1092
Sau96I GGNCC 3 cut(s) 552, 829, 1128
SchI GAGTC 2 cut(s) 299, 890
ScrFI CCNGG 1 cut(s) 102
SfaNI GCATC 4 cut(s) 337, 954, 1158, 1176
SfcI CTRYAG 2 cut(s) 301, 403
SfuI TTCGAA 1 cut(s) 359
SinI GGWCC 3 cut(s) 552, 829, 1128
SmiMI CAYNNNNRTG 2 cut(s) 68, 1056
Sse9I AATT 7 cut(s) 226, 256, 497, 648, 765, 1086, 1357
SsiI CCGC 1 cut(s) 886
SspI AATATT 1 cut(s) 134
SspMI CTAG 5 cut(s) 261, 324, 549, 822, 900
StyD4I CCNGG 1 cut(s) 100
StyI CCWWGG 2 cut(s) 744, 1245
TaaI ACNGT 6 cut(s) 127, 316, 366, 809, 997, 1194
TaiI ACGT 1 cut(s) 845
TaqI TCGA 6 cut(s) 129, 359, 577, 710, 1122, 1228
TasI AATT 7 cut(s) 226, 256, 497, 648, 765, 1086, 1357
Tru1I TTAA 5 cut(s) 45, 645, 716, 1356, 1363
Tru9I TTAA 5 cut(s) 45, 645, 716, 1356, 1363
TscAI CASTG 2 cut(s) 1141, 1294
TseI GCWGC 1 cut(s) 871
TspDTI ATGAA 4 cut(s) 109, 692, 701, 777
TspGWI ACGGA 3 cut(s) 506, 1212, 1278
TspRI CASTG 2 cut(s) 1141, 1294
Tth111I GACNNNGTC 1 cut(s) 995
VpaK11BI GGWCC 3 cut(s) 552, 829, 1128
XapI RAATTY 1 cut(s) 497
XbaI TCTAGA 1 cut(s) 260
XspI CTAG 5 cut(s) 261, 324, 549, 822, 900
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.