AT1G11810

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Forward (+)
3989763 .. 3991066
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11810.1

Sequence Viewer

Length: 1134 bp
ATGACGACGACGATGTCAACCCTTCCAGTGGTTTTGGTAGACGAGATTCTCGCTAGGGTTCCCATTACATCTCTTAGATCACTCCGATCAACGTGCAAGAAATGGGAGGCTTCATCGAAAACCAATCTTGTAGGTGGTAAAGCAACCGCAAGGAAAAGCAGTCACGTAGGGTTTATCCTCATTGGTGACAAGATCTGTTCAATGAAGCTGGACCTAAATGGCGGCGATGACTTTGTTGACACATCAGTGAATCAAGTAAGTGCATTTGATGGATTCGCGATATCTCAACTCTTTCACTGCGACGGCTTATTGTTTTGCATCTCCAATAACCACTACAGCAACTACACGCTCATGGTATGTAACATGTACTTGGGGGAAACTAGGTTGATTCAAAACCGTAGCTTGTTCGAGAGTTATCAGAACTTTTGCTCGTATGCTTTCGGATATGATAGCAGCAAAAACCGTAACCACAAAATCTTGAGAAATAATTCTGTTTCTGGTGGTTATGAAATCTACAGTTTAAAATCCGATTCATGGAAAGATCTTAATGTTGATCTCGAGAAATCTATACATCTTTGGCGACTAGGAAGCGTGTCTTTGAAGGGAAATGCTTACTTTCGGGTTATAAAGGTAATTGAAGAAGGAGTTTGGGAATATAATTTACTCTGTTTTGACTTCACAAGAGAGAGTTTTGGAAAGCTTCTGTCTCTGCCGTTTGAGTCTTTGGGTGATGAAGGAGAAGGCATTATGGTTATATCTTGTGTTAGAGATGATCATCTTGCTGTGTTATATCAACGTGACACTTTAGGTATTTGGATTTCGACTGAGATCGAGCCCAACAAGGTGTCGTGGAGAGAGTTTTTGCAAGTGGACTTGGCGACGCTGGATGGTTTTCCGGATGTATTTATAGCTGGGAGATTCATCGTTGACGAGGAGAAGCAAGTCGTTGTAGTTTTCGGTCAAGAGACAGAGTTGGATCTCAACCACGGAAATGCTTTCATCTTTGGAAGAGATGGATACTTCACCTCTTTTACCGTTGGAGATGCTCCGCCCGAAGACTTCACTTCTTATGTTCCAAGCTTAGTCTCATTGCAAATCGACAAGACGGGTAAAAGGAAAGCAAGAGATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

377

Amino Acids

42.48

Weight (kDa)

5.22

Isoelectric Point (pI)

35.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 58 - 363 4e-78 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 626
AasI GACNNNNNNGTC 1 cut(s) 13
AccI GTMKAC 1 cut(s) 39
AccII CGCG 1 cut(s) 278
AccIII TCCGGA 1 cut(s) 895
AciI CCGC 3 cut(s) 147, 222, 1049
AclWI GGATC 1 cut(s) 984
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 2 cut(s) 28, 534
AflIII ACRYGT 1 cut(s) 363
AgsI TTSAA 4 cut(s) 201, 392, 601, 638
AleI CACNNNNGTG 1 cut(s) 245
AluBI AGCT 5 cut(s) 208, 402, 700, 911, 1080
AluI AGCT 5 cut(s) 208, 402, 700, 911, 1080
Alw26I GTCTC 3 cut(s) 711, 959, 1090
AlwI GGATC 1 cut(s) 984
Ama87I CYCGRG 1 cut(s) 557
Aor13HI TCCGGA 1 cut(s) 895
ApeKI GCWGC 1 cut(s) 453
Asp700I GAANNNNTTC 1 cut(s) 487
AspS9I GGNCC 1 cut(s) 211
AsuHPI GGTGA 3 cut(s) 197, 740, 1015
AvaI CYCGRG 1 cut(s) 557
AvaII GGWCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 837
BbsI GAAGAC 1 cut(s) 1062
BbvI GCAGC 1 cut(s) 465
BccI CCATC 3 cut(s) 263, 881, 1007
BceAI ACGGC 2 cut(s) 319, 697
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciVI GTATCC 1 cut(s) 1010
BclI TGATCA 1 cut(s) 772
BcoDI GTCTC 3 cut(s) 711, 959, 1090
BfaI CTAG 4 cut(s) 54, 381, 584, 1132
BfmI CTRYAG 2 cut(s) 334, 514
BfuI GTATCC 1 cut(s) 1010
BglII AGATCT 2 cut(s) 192, 541
BisI GCNGC 2 cut(s) 223, 454
BlsI GCNGC 2 cut(s) 224, 455
Bme18I GGWCC 1 cut(s) 211
BmeT110I CYCGRG 1 cut(s) 557
BmgT120I GGNCC 1 cut(s) 211
BmiI GGNNCC 1 cut(s) 60
BmsI GCATC 2 cut(s) 327, 1033
BpiI GAAGAC 1 cut(s) 1062
BpuEI CTTGAG 1 cut(s) 499
BsaAI YACGTR 1 cut(s) 166
BsaBI GATNNNNATC 1 cut(s) 774
BsaJI CCNNGG 1 cut(s) 985
BsaWI WCCGGW 1 cut(s) 895
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 534
Bse1I ACTGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 1088
Bse8I GATNNNNATC 1 cut(s) 774
BseAI TCCGGA 1 cut(s) 895
BseDI CCNNGG 1 cut(s) 985
BseGI GGATG 2 cut(s) 892, 904
BseJI GATNNNNATC 1 cut(s) 774
BseLI CCNNNNNNNGG 2 cut(s) 28, 534
BseMI GCAATG 1 cut(s) 1088
BseMII CTCAG 1 cut(s) 816
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 1 cut(s) 947
BseXI GCAGC 1 cut(s) 465
BseYI CCCAGC 1 cut(s) 911
Bsh1236I CGCG 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 557
BsiSI CCGG 1 cut(s) 896
BslI CCNNNNNNNGG 2 cut(s) 28, 534
BsmAI GTCTC 3 cut(s) 711, 959, 1090
BsoBI CYCGRG 1 cut(s) 557
Bsp1286I GDGCHC 1 cut(s) 837
Bsp13I TCCGGA 1 cut(s) 895
Bsp143I GATC 8 cut(s) 77, 86, 192, 541, 553, 772, 828, 976
Bsp68I TCGCGA 1 cut(s) 278
BspACI CCGC 3 cut(s) 147, 222, 1049
BspCNI CTCAG 1 cut(s) 817
BspEI TCCGGA 1 cut(s) 895
BspFNI CGCG 1 cut(s) 278
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 1 cut(s) 984
BsrDI GCAATG 1 cut(s) 1088
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 985
BssMI GATC 8 cut(s) 77, 86, 192, 541, 553, 772, 828, 976
Bst4CI ACNGT 4 cut(s) 398, 464, 518, 1036
Bst6I CTCTTC 1 cut(s) 1003
BstBAI YACGTR 1 cut(s) 166
BstDEI CTNAG 3 cut(s) 74, 825, 1081
BstDSI CCRYGG 1 cut(s) 985
BstF5I GGATG 2 cut(s) 892, 904
BstFNI CGCG 1 cut(s) 278
BstKTI GATC 8 cut(s) 80, 89, 195, 544, 556, 775, 831, 979
BstMAI GTCTC 3 cut(s) 711, 959, 1090
BstMBI GATC 8 cut(s) 77, 86, 192, 541, 553, 772, 828, 976
BstNSI RCATGY 1 cut(s) 367
BstSFI CTRYAG 2 cut(s) 334, 514
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 465
BstV2I GAAGAC 1 cut(s) 1062
BstX2I RGATCY 3 cut(s) 192, 541, 976
BstYI RGATCY 3 cut(s) 192, 541, 976
BsuI GTATCC 1 cut(s) 1010
BtgI CCRYGG 1 cut(s) 985
BtgZI GCGATG 1 cut(s) 240
BtsCI GGATG 2 cut(s) 892, 904
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 3 cut(s) 33, 252, 295
BtuMI TCGCGA 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 211
CseI GACGC 1 cut(s) 889
Csp6I GTAC 1 cut(s) 367
CviAII CATG 3 cut(s) 352, 364, 534
CviJI RGCY 8 cut(s) 110, 208, 306, 402, 700, 835, 911, 1080
CviKI_1 RGCY 8 cut(s) 110, 208, 306, 402, 700, 835, 911, 1080
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 3 cut(s) 74, 825, 1081
DpnI GATC 8 cut(s) 79, 88, 194, 543, 555, 774, 830, 978
DpnII GATC 8 cut(s) 77, 86, 192, 541, 553, 772, 828, 976
DraI TTTAAA 1 cut(s) 522
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 1003
EarI CTCTTC 1 cut(s) 1003
EciI GGCGGA 1 cut(s) 1038
Eco24I GRGCYC 1 cut(s) 837
Eco32I GATATC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 211
Eco88I CYCGRG 1 cut(s) 557
EcoRV GATATC 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 837
FaeI CATG 3 cut(s) 355, 367, 537
FalI AAGNNNNNCTT 2 cut(s) 580, 612
FatI CATG 3 cut(s) 351, 363, 533
FbaI TGATCA 1 cut(s) 772
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 223, 454
FokI GGATG 2 cut(s) 899, 911
FriOI GRGCYC 1 cut(s) 837
Fsp4HI GCNGC 2 cut(s) 223, 454
FspBI CTAG 4 cut(s) 54, 381, 584, 1132
GluI GCNGC 2 cut(s) 223, 454
GsaI CCCAGC 1 cut(s) 915
HapII CCGG 1 cut(s) 896
HgaI GACGC 1 cut(s) 889
Hin1II CATG 3 cut(s) 355, 367, 537
HincII GTYRAC 3 cut(s) 18, 238, 928
HindII GTYRAC 3 cut(s) 18, 238, 928
HindIII AAGCTT 2 cut(s) 698, 1078
HinfI GANTC 7 cut(s) 46, 250, 273, 388, 530, 719, 918
HpaII CCGG 1 cut(s) 896
HphI GGTGA 3 cut(s) 197, 740, 1015
Hpy166II GTNNAC 5 cut(s) 18, 40, 238, 871, 928
Hpy188I TCNGA 4 cut(s) 86, 420, 443, 529
Hpy188III TCNNGA 7 cut(s) 277, 409, 478, 557, 559, 896, 962
Hpy8I GTNNAC 5 cut(s) 18, 40, 238, 871, 928
Hpy99I CGWCG 4 cut(s) 10, 13, 305, 883
HpyAV CCTTC 5 cut(s) 32, 595, 635, 728, 734
HpyCH4III ACNGT 4 cut(s) 398, 464, 518, 1036
HpyCH4IV ACGT 3 cut(s) 92, 165, 796
HpyCH4V TGCA 5 cut(s) 96, 263, 318, 865, 1093
HpyF3I CTNAG 3 cut(s) 74, 825, 1081
HpySE526I ACGT 3 cut(s) 92, 165, 796
Hsp92II CATG 3 cut(s) 355, 367, 537
Kpn2I TCCGGA 1 cut(s) 895
Ksp22I TGATCA 1 cut(s) 772
Kzo9I GATC 8 cut(s) 77, 86, 192, 541, 553, 772, 828, 976
LmnI GCTCC 1 cut(s) 1051
LpnPI CCDG 6 cut(s) 39, 194, 483, 869, 897, 909
Lsp1109I GCAGC 1 cut(s) 465
LweI GCATC 2 cut(s) 327, 1033
MaeI CTAG 4 cut(s) 54, 381, 584, 1132
MaeII ACGT 3 cut(s) 92, 165, 796
MaeIII GTNAC 5 cut(s) 161, 185, 359, 464, 797
MalI GATC 8 cut(s) 79, 88, 194, 543, 555, 774, 830, 978
MboI GATC 8 cut(s) 77, 86, 192, 541, 553, 772, 828, 976
MboII GAAGA 3 cut(s) 650, 1020, 1067
MflI RGATCY 3 cut(s) 192, 541, 976
MhlI GDGCHC 1 cut(s) 837
MluCI AATT 3 cut(s) 487, 633, 658
MlyI GAGTC 1 cut(s) 728
MmeI TCCRAC 2 cut(s) 954, 1018
MnlI CCTC 4 cut(s) 100, 188, 925, 1036
MroI TCCGGA 1 cut(s) 895
MroXI GAANNNNTTC 1 cut(s) 487
MseI TTAA 2 cut(s) 521, 546
MslI CAYNNNNRTG 3 cut(s) 245, 350, 990
MspI CCGG 1 cut(s) 896
MvnI CGCG 1 cut(s) 278
NdeII GATC 8 cut(s) 77, 86, 192, 541, 553, 772, 828, 976
NlaIII CATG 3 cut(s) 355, 367, 537
NlaIV GGNNCC 1 cut(s) 60
NmuCI GTSAC 3 cut(s) 161, 185, 797
NruI TCGCGA 1 cut(s) 278
NspI RCATGY 1 cut(s) 367
OliI CACNNNNGTG 1 cut(s) 245
PaeR7I CTCGAG 1 cut(s) 557
PciI ACATGT 1 cut(s) 363
PdmI GAANNNNTTC 1 cut(s) 487
PfeI GAWTC 6 cut(s) 46, 250, 273, 388, 530, 918
PflFI GACNNNGTC 1 cut(s) 13
PkrI GCNGC 2 cut(s) 224, 455
PleI GAGTC 1 cut(s) 727
PpsI GAGTC 1 cut(s) 727
Ppu21I YACGTR 1 cut(s) 166
PscI ACATGT 1 cut(s) 363
PsiI TTATAA 1 cut(s) 626
PspFI CCCAGC 1 cut(s) 911
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 211
PsuI RGATCY 3 cut(s) 192, 541, 976
PsyI GACNNNGTC 1 cut(s) 13
RruI TCGCGA 1 cut(s) 278
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 3 cut(s) 245, 350, 990
SaqAI TTAA 2 cut(s) 521, 546
SatI GCNGC 2 cut(s) 223, 454
Sau3AI GATC 8 cut(s) 77, 86, 192, 541, 553, 772, 828, 976
Sau96I GGNCC 1 cut(s) 211
SchI GAGTC 1 cut(s) 728
SduI GDGCHC 1 cut(s) 837
SfaNI GCATC 2 cut(s) 327, 1033
SfcI CTRYAG 2 cut(s) 334, 514
Sfr274I CTCGAG 1 cut(s) 557
SinI GGWCC 1 cut(s) 211
SlaI CTCGAG 1 cut(s) 557
SmiMI CAYNNNNRTG 3 cut(s) 245, 350, 990
SmlI CTYRAG 2 cut(s) 478, 557
SmoI CTYRAG 2 cut(s) 478, 557
Sse9I AATT 3 cut(s) 487, 633, 658
SsiI CCGC 3 cut(s) 147, 222, 1049
SspMI CTAG 4 cut(s) 54, 381, 584, 1132
TaaI ACNGT 4 cut(s) 398, 464, 518, 1036
TaiI ACGT 3 cut(s) 95, 168, 799
TaqI TCGA 6 cut(s) 116, 408, 558, 821, 831, 1098
TaqII GACCGA 1 cut(s) 947
TasI AATT 3 cut(s) 487, 633, 658
TatI WGTACW 1 cut(s) 366
TauI GCSGC 1 cut(s) 225
TfiI GAWTC 6 cut(s) 46, 250, 273, 388, 530, 918
Tru1I TTAA 2 cut(s) 521, 546
Tru9I TTAA 2 cut(s) 521, 546
TscAI CASTG 3 cut(s) 33, 252, 302
TseFI GTSAC 3 cut(s) 161, 185, 797
TseI GCWGC 1 cut(s) 453
Tsp45I GTSAC 3 cut(s) 161, 185, 797
TspDTI ATGAA 7 cut(s) 102, 218, 522, 522, 747, 910, 988
TspGWI ACGGA 1 cut(s) 1002
TspRI CASTG 3 cut(s) 33, 252, 302
Tth111I GACNNNGTC 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 211
XceI RCATGY 1 cut(s) 367
XhoI CTCGAG 1 cut(s) 557
XmiI GTMKAC 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 487
XspI CTAG 4 cut(s) 54, 381, 584, 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.