AT5G36200

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000186
Physical Location & Seq
Reverse (-)
14244106 .. 14246296
2191 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G36200.1

Sequence Viewer

Length: 1416 bp
ATGGCGATGTCCGATCTTCCAAATGATTTGGTGGAGGAGATCATCTCTAGGGTTCCGGTAAAATCTATAAGAGCAGTAAGCTCTACTTGCAAAAACTGGAACACTTTATCCAACGATCATAGCTTTACGAGGAAGCTCTTTGGTAAAACAATAACAACAAAGGAAAATGAGTGTTTGGTGGTCATGATGATGGATTCTAAGGTTTATTTAATGAGCGTCAATCTCCATAGAATTCACAAAGAAAACGACGACAACAACATTAAATCATCTATCATGCATAAAGCTAAACTCATTAGCCTAAACGATGATGACATACTCAATAATACATATATAATTTTTCACTGCAATGGTTTACTGTTATTGTTAGGCTTCACCGACGATGGCATCAAGCTTGTGGTTACGAACCCTCATTTAGGGCAAACAAGGTGGATCAAACCTAGAAAAGCTAATTACCAGTTTTGTGACAAGTACGCTATCGGATACGAGAAGAAGAAGAACAACTCTCTTCGTACCAACAAAATGTTGTTATTTCATAAAGAATCCTTCTGCTTCCGGATTTATTGGTTTGAAATCTACAACTTTAACTCTGCTTCATGGAATGTTTTCTATTTCACTCGTGACTGGGAATTACCGTATTCTCAAGGCGTGTCTCTCAAGGGAAACACTTACTGGTTTGCTAGAGAGATAAATATAAGAGGAGAAAGAATAGATGATCCTCCTGACTTCTTGATCTGTTTTGACTTTACAACAGAGAGATTTGGACCGCGTCTTCACCTGCCCTTTCACTCTCATTCTGATGATACTGTGATTCTCTCTAGTGTTAGAGAAGAACAGCTTGCGGTGTTGATTAAGCGCTTCGATTTATGGAGGATGGAGATTTGGGTTACGACTAAGATTGAGCCTAAGGAGGTCTCATGGAACAAGTTGTTCTTAGCGGTTGATATGATACCACTGATCACTGCTTTTCAGTTTTGTAATGTGAGTTTTTTCATTGACGAGAAGAAGAATGTCGTCGTGGTTCTTGGTAAAGATGTGTTGAATACACGAAACATAGCTAATATTATTGGAAATGATGGATACTTTAAACAAGTGGATCTTGGAGAATCTACAAACAAATATTGTTACCCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAAATCAAGCAAGCTACACGAGTGATGCATCATCATCACATTGTCTTGAGAGCAGTTGTTAGAGCGGTGAGGGATAGTGATAGAGAGCGGAAGCTAAATAACGGACGAGAACATAAAATCTCTAGAAGAACTCGGATTCACGAACGGATCTTGTTTAGAATGTTGAAACTTGACGAAGAAGCAATAGGGATAAGGTCGAGATCGGTTCCAAGGGATCGATATCAACAAGGTTTTGCAAGTTCTCCTTGCAGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

471

Amino Acids

55.21

Weight (kDa)

9.27

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 44 1.8e-10 F-box domain
F-box-like PF12937 3 - 47 1.5e-07 F-box-like
FBA_1 PF07734 60 - 388 1.2e-102 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 783
Acc36I ACCTGC 1 cut(s) 783
AccBSI CCGCTC 2 cut(s) 1223, 1246
AccII CGCG 1 cut(s) 766
AccIII TCCGGA 1 cut(s) 552
AciI CCGC 5 cut(s) 764, 839, 935, 1223, 1246
AclWI GGATC 5 cut(s) 437, 707, 1101, 1313, 1380
AcsI RAATTY 1 cut(s) 231
AfaI GTAC 2 cut(s) 470, 511
AfeI AGCGCT 1 cut(s) 854
AfiI CCNNNNNNNGG 1 cut(s) 413
AgsI TTSAA 3 cut(s) 569, 1039, 1324
AleI CACNNNNGTG 1 cut(s) 1132
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
Alw21I GWGCWC 1 cut(s) 1139
Alw26I GTCTC 2 cut(s) 654, 916
AlwI GGATC 5 cut(s) 437, 707, 1101, 1313, 1380
Aor13HI TCCGGA 1 cut(s) 552
Aor51HI AGCGCT 1 cut(s) 854
ApoI RAATTY 1 cut(s) 231
Asp700I GAANNNNTTC 1 cut(s) 602
AspLEI GCGC 1 cut(s) 855
AspS9I GGNCC 1 cut(s) 761
AsuHPI GGTGA 3 cut(s) 364, 764, 1237
AvaII GGWCC 1 cut(s) 761
AxyI CCTNAGG 1 cut(s) 903
BauI CACGAG 2 cut(s) 615, 1176
BbsI GAAGAC 1 cut(s) 761
Bbv12I GWGCWC 1 cut(s) 1139
BccI CCATC 4 cut(s) 184, 374, 865, 1067
BciVI GTATCC 2 cut(s) 473, 1070
BclI TGATCA 1 cut(s) 954
BcoDI GTCTC 2 cut(s) 654, 916
BfaI CTAG 5 cut(s) 48, 438, 678, 816, 1281
BfoI RGCGCY 1 cut(s) 856
BfuAI ACCTGC 1 cut(s) 783
BfuI GTATCC 2 cut(s) 473, 1070
Bme18I GGWCC 1 cut(s) 761
BmgT120I GGNCC 1 cut(s) 761
BmiI GGNNCC 2 cut(s) 54, 1365
BmrI ACTGGG 1 cut(s) 631
BmsI GCATC 3 cut(s) 393, 1173, 1195
BmuI ACTGGG 1 cut(s) 631
BpiI GAAGAC 1 cut(s) 761
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BpuEI CTTGAG 3 cut(s) 624, 638, 1225
Bsa29I ATCGAT 1 cut(s) 1375
BsaBI GATNNNNATC 1 cut(s) 1377
BsaI GGTCTC 1 cut(s) 916
BsaJI CCNNGG 1 cut(s) 1367
BsaWI WCCGGW 2 cut(s) 55, 552
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse1I ACTGG 4 cut(s) 101, 454, 626, 674
Bse21I CCTNAGG 1 cut(s) 903
Bse3DI GCAATG 1 cut(s) 352
Bse8I GATNNNNATC 1 cut(s) 1377
BseAI TCCGGA 1 cut(s) 552
BseCI ATCGAT 1 cut(s) 1375
BseDI CCNNGG 1 cut(s) 1367
BseGI GGATG 1 cut(s) 876
BseJI GATNNNNATC 1 cut(s) 1377
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMI GCAATG 1 cut(s) 352
BseNI ACTGG 4 cut(s) 101, 454, 626, 674
BseRI GAGGAG 2 cut(s) 50, 711
Bsh1236I CGCG 1 cut(s) 766
BshVI ATCGAT 1 cut(s) 1375
BsiHKAI GWGCWC 1 cut(s) 1139
BsiSI CCGG 2 cut(s) 56, 553
BslI CCNNNNNNNGG 1 cut(s) 413
BsmAI GTCTC 2 cut(s) 654, 916
Bso31I GGTCTC 1 cut(s) 916
Bsp1286I GDGCHC 1 cut(s) 1139
Bsp13I TCCGGA 1 cut(s) 552
BspACI CCGC 5 cut(s) 764, 839, 935, 1223, 1246
BspDI ATCGAT 1 cut(s) 1375
BspEI TCCGGA 1 cut(s) 552
BspFNI CGCG 1 cut(s) 766
BspHI TCATGA 1 cut(s) 183
BspLI GGNNCC 2 cut(s) 54, 1365
BspMI ACCTGC 1 cut(s) 783
BspPI GGATC 5 cut(s) 437, 707, 1101, 1313, 1380
BspTNI GGTCTC 1 cut(s) 916
BsrBI CCGCTC 2 cut(s) 1223, 1246
BsrDI GCAATG 1 cut(s) 352
BsrI ACTGG 4 cut(s) 101, 454, 626, 674
BssECI CCNNGG 1 cut(s) 1367
BssSI CACGAG 2 cut(s) 615, 1176
BssT1I CCWWGG 1 cut(s) 1367
Bst2BI CACGAG 2 cut(s) 615, 1176
Bst4CI ACNGT 3 cut(s) 357, 633, 805
Bst6I CTCTTC 1 cut(s) 510
BstC8I GCNNGC 2 cut(s) 837, 1170
BstDEI CTNAG 4 cut(s) 198, 891, 903, 931
BstENI CCTNNNNNAGG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 876
BstFNI CGCG 1 cut(s) 766
BstH2I RGCGCY 1 cut(s) 856
BstHHI GCGC 1 cut(s) 855
BstMAI GTCTC 2 cut(s) 654, 916
BstMWI GCNNNNNNNGC 2 cut(s) 87, 1165
BstUI CGCG 1 cut(s) 766
BstV2I GAAGAC 1 cut(s) 761
BstX2I RGATCY 2 cut(s) 1093, 1305
BstYI RGATCY 2 cut(s) 1093, 1305
Bsu15I ATCGAT 1 cut(s) 1375
Bsu36I CCTNAGG 1 cut(s) 903
BsuI GTATCC 2 cut(s) 473, 1070
BsuTUI ATCGAT 1 cut(s) 1375
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 876
BtsI GCAGTG 2 cut(s) 340, 957
BtsIMutI CAGTG 4 cut(s) 340, 950, 957, 1161
BveI ACCTGC 1 cut(s) 783
Cac8I GCNNGC 2 cut(s) 837, 1170
CciI TCATGA 1 cut(s) 183
CfoI GCGC 1 cut(s) 855
Cfr13I GGNCC 1 cut(s) 761
ClaI ATCGAT 1 cut(s) 1375
CseI GACGC 2 cut(s) 205, 755
Csp6I GTAC 2 cut(s) 469, 510
CspCI CAANNNNNGTGG 2 cut(s) 407, 442
CviAII CATG 4 cut(s) 184, 274, 594, 915
CviQI GTAC 2 cut(s) 469, 510
DdeI CTNAG 4 cut(s) 198, 891, 903, 931
DraI TTTAAA 1 cut(s) 1084
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Eco130I CCWWGG 1 cut(s) 1367
Eco31I GGTCTC 1 cut(s) 916
Eco32I GATATC 1 cut(s) 1379
Eco47I GGWCC 1 cut(s) 761
Eco47III AGCGCT 1 cut(s) 854
Eco81I CCTNAGG 1 cut(s) 903
EcoNI CCTNNNNNAGG 1 cut(s) 411
EcoRI GAATTC 1 cut(s) 231
EcoRV GATATC 1 cut(s) 1379
EcoT14I CCWWGG 1 cut(s) 1367
EcoT22I ATGCAT 2 cut(s) 279, 1188
ErhI CCWWGG 1 cut(s) 1367
FaeI CATG 4 cut(s) 187, 277, 597, 918
FalI AAGNNNNNCTT 9 cut(s) 70, 102, 819, 851, 914, 946, 1080, 1112, 1387
FatI CATG 4 cut(s) 183, 273, 593, 914
FbaI TGATCA 1 cut(s) 954
FokI GGATG 1 cut(s) 883
FspBI CTAG 5 cut(s) 48, 438, 678, 816, 1281
GlaI GCGC 1 cut(s) 854
HaeII RGCGCY 1 cut(s) 856
HapII CCGG 2 cut(s) 56, 553
HgaI GACGC 2 cut(s) 205, 755
HhaI GCGC 1 cut(s) 855
Hin1II CATG 4 cut(s) 187, 277, 597, 918
Hin6I GCGC 1 cut(s) 853
HinP1I GCGC 1 cut(s) 853
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 5 cut(s) 194, 539, 808, 1103, 1294
HpaII CCGG 2 cut(s) 56, 553
HphI GGTGA 3 cut(s) 364, 764, 1237
Hpy166II GTNNAC 1 cut(s) 353
Hpy188I TCNGA 4 cut(s) 13, 479, 796, 1293
Hpy188III TCNNGA 9 cut(s) 184, 553, 617, 719, 727, 1204, 1281, 1298, 1356
Hpy8I GTNNAC 1 cut(s) 353
Hpy99I CGWCG 3 cut(s) 251, 380, 1016
HpyAV CCTTC 1 cut(s) 553
HpyCH4III ACNGT 3 cut(s) 357, 633, 805
HpyCH4V TGCA 7 cut(s) 90, 277, 345, 1159, 1186, 1394, 1407
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 1165
HpyF3I CTNAG 4 cut(s) 198, 891, 903, 931
Hsp92II CATG 4 cut(s) 187, 277, 597, 918
HspAI GCGC 1 cut(s) 853
Kpn2I TCCGGA 1 cut(s) 552
Ksp22I TGATCA 1 cut(s) 954
LpnPI CCDG 9 cut(s) 69, 82, 467, 566, 607, 655, 732, 788, 1393
LweI GCATC 3 cut(s) 393, 1173, 1195
MaeI CTAG 5 cut(s) 48, 438, 678, 816, 1281
MaeIII GTNAC 5 cut(s) 397, 461, 617, 883, 1121
MbiI CCGCTC 2 cut(s) 1223, 1246
MflI RGATCY 2 cut(s) 1093, 1305
MhlI GDGCHC 1 cut(s) 1139
MluCI AATT 4 cut(s) 231, 333, 448, 626
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 8 cut(s) 28, 123, 417, 689, 726, 861, 901, 1221
Mph1103I ATGCAT 2 cut(s) 279, 1188
MroI TCCGGA 1 cut(s) 552
MroXI GAANNNNTTC 1 cut(s) 602
MseI TTAA 5 cut(s) 209, 261, 582, 849, 1083
MslI CAYNNNNRTG 4 cut(s) 188, 345, 795, 1132
MspI CCGG 2 cut(s) 56, 553
MvnI CGCG 1 cut(s) 766
MwoI GCNNNNNNNGC 2 cut(s) 87, 1165
NlaIII CATG 4 cut(s) 187, 277, 597, 918
NlaIV GGNNCC 2 cut(s) 54, 1365
NmuCI GTSAC 2 cut(s) 461, 617
NsiI ATGCAT 2 cut(s) 279, 1188
OliI CACNNNNGTG 1 cut(s) 1132
PagI TCATGA 1 cut(s) 183
PaqCI CACCTGC 1 cut(s) 783
PdmI GAANNNNTTC 1 cut(s) 602
PfeI GAWTC 5 cut(s) 194, 539, 808, 1103, 1294
PflFI GACNNNGTC 1 cut(s) 765
PspN4I GGNNCC 2 cut(s) 54, 1365
PspPI GGNCC 1 cut(s) 761
PsuI RGATCY 2 cut(s) 1093, 1305
PsyI GACNNNGTC 1 cut(s) 765
RsaI GTAC 2 cut(s) 470, 511
RsaNI GTAC 2 cut(s) 469, 510
RseI CAYNNNNRTG 4 cut(s) 188, 345, 795, 1132
SaqAI TTAA 5 cut(s) 209, 261, 582, 849, 1083
Sau96I GGNCC 1 cut(s) 761
SduI GDGCHC 1 cut(s) 1139
SfaNI GCATC 3 cut(s) 393, 1173, 1195
SinI GGWCC 1 cut(s) 761
SmiMI CAYNNNNRTG 4 cut(s) 188, 345, 795, 1132
SmlI CTYRAG 3 cut(s) 639, 653, 1204
SmoI CTYRAG 3 cut(s) 639, 653, 1204
Sse9I AATT 4 cut(s) 231, 333, 448, 626
SsiI CCGC 5 cut(s) 764, 839, 935, 1223, 1246
SspI AATATT 2 cut(s) 1060, 1118
SspMI CTAG 5 cut(s) 48, 438, 678, 816, 1281
StyI CCWWGG 1 cut(s) 1367
TaaI ACNGT 3 cut(s) 357, 633, 805
TaqI TCGA 3 cut(s) 858, 1355, 1375
TasI AATT 4 cut(s) 231, 333, 448, 626
TfiI GAWTC 5 cut(s) 194, 539, 808, 1103, 1294
Tru1I TTAA 5 cut(s) 209, 261, 582, 849, 1083
Tru9I TTAA 5 cut(s) 209, 261, 582, 849, 1083
TscAI CASTG 4 cut(s) 347, 957, 964, 1161
TseFI GTSAC 2 cut(s) 461, 617
Tsp45I GTSAC 2 cut(s) 461, 617
TspDTI ATGAA 3 cut(s) 521, 582, 979
TspGWI ACGGA 2 cut(s) 1275, 1318
TspRI CASTG 4 cut(s) 347, 957, 964, 1161
Tth111I GACNNNGTC 1 cut(s) 765
VpaK11BI GGWCC 1 cut(s) 761
XagI CCTNNNNNAGG 1 cut(s) 411
XapI RAATTY 1 cut(s) 231
XbaI TCTAGA 1 cut(s) 1280
XmnI GAANNNNTTC 1 cut(s) 602
XspI CTAG 5 cut(s) 48, 438, 678, 816, 1281
Zsp2I ATGCAT 2 cut(s) 279, 1188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.