AT1G58090

Weak chloroplast movement under blue light

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Forward (+)
21510510 .. 21511625
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G58090.1

Sequence Viewer

Length: 1116 bp
ATGGTGTCGAAAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCTCGATCTCTCGTTCGCTTCAGATCCGTTTGCAGAGAATGGAACACTCTTTTCAAGAATAAGAGATTCATCAACAAAAACTTTGCTTGCGGTCGGCCAGAAATCATGTTAAATACACATTCACATATTTATTCGATAAGCGTCGATCTCAAAGACGAAAATCCAACTATAAAGGTGCGTGATTTACGCTTTGATCATTTAAGTTGCCGCGGTTATCATCTGTATGGGATCTGCGATGGTAACTTCTTCATGTATAGCTTTCTTAATGGAGGCGGAGGCGTTGTTTGGAACCCGTTGTTTTGGAGACAGACTAAATGGATTGCCAAGGCTGAGAATACATGTGGCAAGGCCATTGGTTACGATGGTAGTAGACCCGAAAAGAGTTACAAGATTATCGGAAGGAGTAGTTGTTCTTGGCAGGGTAAAGTTACTGATACATATTCAGTCTTCGAATTTGCAACCAATGCGTGGAAGGTTACTGATCATACCCGTTTTCACGAAAAGCCAGAATTAATGGACGACTCCGGTAGGGTCTCCCTGAATGGAAATTTGTACTGGACAGCTTATAATTCTCCCCACACTGGTCAGTATTTCATCGCAATGCTCGATTTTTCGAAAGAGATAGAAAAGAGTCGAAAGACCTTTTGTGTTTTACCGTGTAAGGGGGAAAAAAGTACTACACATACTCGTATCCTCTCGATTTACAAGGGAGATCGGTTTTCAGTGTTAGAACAATCCAAAAAAACAAGGGAGATTGAGATTTGGGTGACAAAGGATCAAATTGGTAACGGGGATGATGGAGACGATGTGGTGTGGATTAAGTTCATGACAGTCTCAAGACCTGACTTCCCCATATTACTTAGTTACATCTCTACAAGTTACTTTGTCGATAATGATATCCATGGGAAGAGCTTTGTTCTGTGTTGTCCTAGCAAGAGACCTAAAGCAGCTTGGGTGTATATTGTGAGGGGAGATTTGTGCAAAAAGATTAAGATAGATCAAGTGCTATGTGAGTTTCAATCCTCTGTCTATGTTCCCAGTTTGATCACCATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PPR_2 WEMBL

Protein Analysis

371

Amino Acids

42.89

Weight (kDa)

9.05

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 43 1.5e-08 F-box domain
FBA_1 PF07734 54 - 370 1.3e-66 F-box associated beta propeller domain
FBA_3 PF08268 113 - 279 4.3e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 624
AccB7I CCANNNNNTGG 1 cut(s) 525
AccI GTMKAC 1 cut(s) 427
AccII CGCG 1 cut(s) 267
AciI CCGC 4 cut(s) 147, 265, 267, 330
AclWI GGATC 3 cut(s) 75, 293, 840
AcoI YGGCCR 1 cut(s) 152
AcsI RAATTY 2 cut(s) 509, 604
AcuI CTGAAG 1 cut(s) 61
AfaI GTAC 2 cut(s) 611, 733
AfiI CCNNNNNNNGG 3 cut(s) 525, 638, 719
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 2 cut(s) 112, 1076
AloI GAACNNNNNNTCC 2 cut(s) 451, 483
AluBI AGCT 5 cut(s) 16, 315, 620, 969, 1007
AluI AGCT 5 cut(s) 16, 315, 620, 969, 1007
Alw26I GTCTC 5 cut(s) 355, 595, 852, 895, 988
AlwI GGATC 3 cut(s) 75, 293, 840
AoxI GGCC 2 cut(s) 152, 405
ApeKI GCWGC 1 cut(s) 1004
ApoI RAATTY 2 cut(s) 509, 604
AseI ATTAAT 1 cut(s) 569
AsuHPI GGTGA 2 cut(s) 835, 1096
AsuII TTCGAA 2 cut(s) 507, 671
BarI GAAGNNNNNNTAC 2 cut(s) 24, 56
BbsI GAAGAC 1 cut(s) 496
BbvI GCAGC 1 cut(s) 1016
BccI CCATC 3 cut(s) 287, 413, 848
BciVI GTATCC 1 cut(s) 758
BclI TGATCA 3 cut(s) 250, 538, 1101
BcoDI GTCTC 5 cut(s) 355, 595, 852, 895, 988
BfaI CTAG 1 cut(s) 987
BfuI GTATCC 1 cut(s) 758
BglII AGATCT 1 cut(s) 25
BisI GCNGC 2 cut(s) 265, 1005
BlsI GCNGC 2 cut(s) 266, 1006
BmcAI AGTACT 1 cut(s) 733
BmiI GGNNCC 1 cut(s) 347
BmrI ACTGGG 1 cut(s) 1089
BmuI ACTGGG 1 cut(s) 1089
BpiI GAAGAC 1 cut(s) 496
Bpu14I TTCGAA 2 cut(s) 507, 671
BpuEI CTTGAG 1 cut(s) 877
BsaI GGTCTC 2 cut(s) 595, 988
BsaJI CCNNGG 3 cut(s) 265, 381, 958
BsaWI WCCGGW 1 cut(s) 581
BsaXI ACNNNNNCTCC 6 cut(s) 324, 354, 451, 481, 849, 879
Bsc4I CCNNNNNNNGG 3 cut(s) 525, 638, 719
Bse1I ACTGG 3 cut(s) 617, 643, 1095
Bse3DI GCAATG 1 cut(s) 663
BseDI CCNNGG 3 cut(s) 265, 381, 958
BseGI GGATG 1 cut(s) 856
BseLI CCNNNNNNNGG 3 cut(s) 525, 638, 719
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 3 cut(s) 617, 643, 1095
BseXI GCAGC 1 cut(s) 1016
Bsh1236I CGCG 1 cut(s) 267
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 2 cut(s) 154, 407
BsiEI CGRYCG 1 cut(s) 151
BsiSI CCGG 1 cut(s) 582
BslI CCNNNNNNNGG 3 cut(s) 525, 638, 719
BsmAI GTCTC 5 cut(s) 355, 595, 852, 895, 988
BsmBI CGTCTC 1 cut(s) 852
BsnI GGCC 2 cut(s) 154, 407
Bso31I GGTCTC 2 cut(s) 595, 988
Bsp119I TTCGAA 2 cut(s) 507, 671
Bsp19I CCATGG 1 cut(s) 958
BspACI CCGC 4 cut(s) 147, 265, 267, 330
BspANI GGCC 2 cut(s) 154, 407
BspCNI CTCAG 1 cut(s) 379
BspFNI CGCG 1 cut(s) 267
BspHI TCATGA 1 cut(s) 882
BspLI GGNNCC 1 cut(s) 347
BspPI GGATC 3 cut(s) 75, 293, 840
BspQI GCTCTTC 1 cut(s) 959
BspT104I TTCGAA 2 cut(s) 507, 671
BspTNI GGTCTC 2 cut(s) 595, 988
BsrDI GCAATG 1 cut(s) 663
BsrI ACTGG 3 cut(s) 617, 643, 1095
BssECI CCNNGG 3 cut(s) 265, 381, 958
BssT1I CCWWGG 2 cut(s) 381, 958
Bst4CI ACNGT 2 cut(s) 714, 889
Bst6I CTCTTC 2 cut(s) 30, 959
BstAPI GCANNNNNTGC 1 cut(s) 521
BstBI TTCGAA 2 cut(s) 507, 671
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 387, 917
BstDSI CCRYGG 2 cut(s) 265, 958
BstF5I GGATG 1 cut(s) 856
BstFNI CGCG 1 cut(s) 267
BstMAI GTCTC 5 cut(s) 355, 595, 852, 895, 988
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 521
BstNSI RCATGY 1 cut(s) 399
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 1016
BstV2I GAAGAC 1 cut(s) 496
BstX2I RGATCY 3 cut(s) 25, 80, 285
BstYI RGATCY 3 cut(s) 25, 80, 285
BsuI GTATCC 1 cut(s) 758
BsuRI GGCC 2 cut(s) 154, 407
BtgI CCRYGG 2 cut(s) 265, 958
BtgZI GCGATG 2 cut(s) 306, 637
BtsCI GGATG 1 cut(s) 856
BtsIMutI CAGTG 2 cut(s) 636, 786
Cac8I GCNNGC 1 cut(s) 145
CciI TCATGA 1 cut(s) 882
Cfr42I CCGCGG 1 cut(s) 268
CseI GACGC 1 cut(s) 187
Csp6I GTAC 2 cut(s) 610, 732
CviAII CATG 5 cut(s) 163, 307, 396, 883, 959
CviJI RGCY 9 cut(s) 16, 154, 315, 386, 407, 562, 620, 969, 1007
CviKI_1 RGCY 9 cut(s) 16, 154, 315, 386, 407, 562, 620, 969, 1007
CviQI GTAC 2 cut(s) 610, 732
DdeI CTNAG 2 cut(s) 387, 917
EaeI YGGCCR 1 cut(s) 152
Eam1104I CTCTTC 2 cut(s) 30, 959
EarI CTCTTC 2 cut(s) 30, 959
EciI GGCGGA 1 cut(s) 345
Eco130I CCWWGG 2 cut(s) 381, 958
Eco31I GGTCTC 2 cut(s) 595, 988
Eco32I GATATC 1 cut(s) 955
Eco57I CTGAAG 1 cut(s) 61
EcoRV GATATC 1 cut(s) 955
EcoT14I CCWWGG 2 cut(s) 381, 958
ErhI CCWWGG 2 cut(s) 381, 958
Esp3I CGTCTC 1 cut(s) 852
FaeI CATG 5 cut(s) 166, 310, 399, 886, 962
FatI CATG 5 cut(s) 162, 306, 395, 882, 958
FbaI TGATCA 3 cut(s) 250, 538, 1101
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 265, 1005
FokI GGATG 1 cut(s) 863
Fsp4HI GCNGC 2 cut(s) 265, 1005
FspBI CTAG 1 cut(s) 987
GluI GCNGC 2 cut(s) 265, 1005
HaeIII GGCC 2 cut(s) 154, 407
HapII CCGG 1 cut(s) 582
HgaI GACGC 1 cut(s) 187
Hin1II CATG 5 cut(s) 166, 310, 399, 886, 962
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 3 cut(s) 123, 578, 688
HpaII CCGG 1 cut(s) 582
HphI GGTGA 2 cut(s) 835, 1096
Hpy166II GTNNAC 1 cut(s) 428
Hpy188I TCNGA 2 cut(s) 80, 455
Hpy188III TCNNGA 6 cut(s) 29, 112, 554, 754, 883, 894
Hpy8I GTNNAC 1 cut(s) 428
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 2 cut(s) 450, 523
HpyCH4III ACNGT 2 cut(s) 714, 889
HpyCH4V TGCA 3 cut(s) 90, 515, 1038
HpyF10VI GCNNNNNNNGC 1 cut(s) 521
HpyF3I CTNAG 2 cut(s) 387, 917
Hsp92II CATG 5 cut(s) 166, 310, 399, 886, 962
Ksp22I TGATCA 3 cut(s) 250, 538, 1101
KspI CCGCGG 1 cut(s) 268
LguI GCTCTTC 1 cut(s) 959
Lsp1109I GCAGC 1 cut(s) 1016
MaeI CTAG 1 cut(s) 987
MaeIII GTNAC 9 cut(s) 296, 413, 440, 484, 532, 823, 842, 920, 935
MboII GAAGA 5 cut(s) 44, 47, 295, 496, 976
MflI RGATCY 3 cut(s) 25, 80, 285
MluCI AATT 5 cut(s) 509, 566, 604, 625, 837
MlyI GAGTC 2 cut(s) 572, 697
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 6 cut(s) 69, 320, 326, 761, 1017, 1090
MseI TTAA 6 cut(s) 167, 257, 321, 569, 876, 1047
MslI CAYNNNNRTG 2 cut(s) 279, 656
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 1 cut(s) 582
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 521
NcoI CCATGG 1 cut(s) 958
NlaIII CATG 5 cut(s) 166, 310, 399, 886, 962
NlaIV GGNNCC 1 cut(s) 347
NmuCI GTSAC 1 cut(s) 823
NspI RCATGY 1 cut(s) 399
NspV TTCGAA 2 cut(s) 507, 671
PagI TCATGA 1 cut(s) 882
PciI ACATGT 1 cut(s) 395
PciSI GCTCTTC 1 cut(s) 959
PcsI WCGNNNNNNNCGW 1 cut(s) 660
PfeI GAWTC 1 cut(s) 123
PflMI CCANNNNNTGG 1 cut(s) 525
PkrI GCNGC 2 cut(s) 266, 1006
PleI GAGTC 2 cut(s) 572, 696
PpsI GAGTC 2 cut(s) 572, 696
PscI ACATGT 1 cut(s) 395
PshBI ATTAAT 1 cut(s) 569
PsiI TTATAA 1 cut(s) 624
PspN4I GGNNCC 1 cut(s) 347
PsuI RGATCY 3 cut(s) 25, 80, 285
RsaI GTAC 2 cut(s) 611, 733
RsaNI GTAC 2 cut(s) 610, 732
RseI CAYNNNNRTG 2 cut(s) 279, 656
SacII CCGCGG 1 cut(s) 268
SapI GCTCTTC 1 cut(s) 959
SaqAI TTAA 6 cut(s) 167, 257, 321, 569, 876, 1047
SatI GCNGC 2 cut(s) 265, 1005
ScaI AGTACT 1 cut(s) 733
SchI GAGTC 2 cut(s) 572, 697
Sfr303I CCGCGG 1 cut(s) 268
SfuI TTCGAA 2 cut(s) 507, 671
SgrBI CCGCGG 1 cut(s) 268
SmiMI CAYNNNNRTG 2 cut(s) 279, 656
SmlI CTYRAG 1 cut(s) 892
SmoI CTYRAG 1 cut(s) 892
Sse9I AATT 5 cut(s) 509, 566, 604, 625, 837
SsiI CCGC 4 cut(s) 147, 265, 267, 330
SspMI CTAG 1 cut(s) 987
StyI CCWWGG 2 cut(s) 381, 958
TaaI ACNGT 2 cut(s) 714, 889
TasI AATT 5 cut(s) 509, 566, 604, 625, 837
TatI WGTACW 2 cut(s) 609, 731
TauI GCSGC 1 cut(s) 267
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 6 cut(s) 167, 257, 321, 569, 876, 1047
Tru9I TTAA 6 cut(s) 167, 257, 321, 569, 876, 1047
TscAI CASTG 2 cut(s) 643, 786
TseFI GTSAC 1 cut(s) 823
TseI GCWGC 1 cut(s) 1004
Tsp45I GTSAC 1 cut(s) 823
TspDTI ATGAA 4 cut(s) 115, 295, 640, 871
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 2 cut(s) 643, 786
Van91I CCANNNNNTGG 1 cut(s) 525
VspI ATTAAT 1 cut(s) 569
XapI RAATTY 2 cut(s) 509, 604
XceI RCATGY 1 cut(s) 399
XmiI GTMKAC 1 cut(s) 427
XspI CTAG 1 cut(s) 987
ZrmI AGTACT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.