AT3G19880

octanoyl transferase activity (acting on glycine-cleavage complex H protein)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
6911435 .. 6912604
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19880.1

Sequence Viewer

Length: 1170 bp
ATGACGATGATGAGTGATCTTACGCAGGATTTGGTAGAGGAGATACTGTCTAGGGTTCCGATAACTTCTCTAGGAGCAGTGAGATCCACCTGCAAAGGATGGAACGCTTTATCCAAAGAACGGATTCTATGTATAGGAGAACCAAAACAGCAGTTTCTAGGGTTCATGATGTTGGATTATAGGCTTTGCTCAATGAGGTTCAATCTTCACGGAATCCTCAACGAAGACTTTGTTAGTATATCAATGTATCAAGTCGAAACATCTCAAGTCTTTTACTGCGCCGGCTTATTGTTATGTGTAACAAGGGAGAAGTCATCAAGGCTCATTATTTGGAACCCGTATTTAGGACAAACCAGATGGATCAACACCAAAACCACAAAAACAGGATACAATACGTATGCTCTTGGATGTGACAACAACAAGAATCACAAGATATTGAAAGTTTTCTGTGATGACTACCAGTGCTACTACGAAATTTACGATGTAAAGTCTAATTCATGGAGTGCTTTTAATGTCACTGATCCCAACTGGCATATAGACTATGATATATGCGCATTGGTAAATGGAAATACTTACTTTTTGACTAAAGAAAGAATACTAGTGGAAGATTCCGATGAAGATGAAGATGAAGTTGAAACCCCTGAAATCTTAATCTGTTTTGATTTTACGGCAGAGAGATTTGGCAAGTTTCTTCATCTACCGTTTCAGTTTGATATTGATTTCGGAGATACCGGAGGTCTATCTTGTGTTAAAGAAGAGAAACTCGCGGTGTTACTTAAACGCTATGATCAAAATGTGATAGAGATTTGGGTTACTACTAAGATTGAGCCCAATGTGGTGTTTTGGAAACCCTTCTTAAAAGTTGATATTGAGACAGTACTCGGTGCTCTTCTTGATTTTCAGCTTGACAGTTTCTTCATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTAGTTCAAACAAATCAAAATGCTACAAAACAGCTTACATTATTGGAGAAGATAGATACTTGAAAGAAGTGGATCTTGGAGAATGTAAACCATTGCGTAGCCCAATTGTGTGTTTTAGCTCGTATGTTCCAAGTTTAGTGCAAATCAACCAAATTGCAGTACCCAAAAGGAGAGAGAATAAGAGGAAGAGGAAGAGCAAAGGAAAGGGTAGAGAAGTGTGA

Protein Analysis

389

Amino Acids

45.08

Weight (kDa)

5.65

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 42 1e-06 F-box domain
FBA_1 PF07734 54 - 365 1.3e-96 F-box associated beta propeller domain
FBA_3 PF08268 89 - 272 1e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 98
Acc16I TGCGCA 1 cut(s) 553
Acc36I ACCTGC 1 cut(s) 98
AccII CGCG 2 cut(s) 767, 941
AciI CCGC 2 cut(s) 767, 941
AclWI GGATC 4 cut(s) 78, 368, 515, 1029
AcsI RAATTY 1 cut(s) 474
AfaI GTAC 2 cut(s) 879, 1110
AfiI CCNNNNNNNGG 2 cut(s) 120, 344
AgsI TTSAA 5 cut(s) 202, 439, 635, 957, 1012
AhlI ACTAGT 1 cut(s) 598
AjuI GAANNNNNNNTTGG 2 cut(s) 1008, 1040
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 3 cut(s) 904, 983, 1068
AluI AGCT 3 cut(s) 904, 983, 1068
Alw21I GWGCWC 1 cut(s) 889
Alw26I GTCTC 1 cut(s) 866
AlwI GGATC 4 cut(s) 78, 368, 515, 1029
ApoI RAATTY 1 cut(s) 474
Asp700I GAANNNNTTC 3 cut(s) 123, 443, 851
AspLEI GCGC 2 cut(s) 281, 554
BanII GRGCYC 1 cut(s) 831
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 889
BccI CCATC 2 cut(s) 93, 351
BceAI ACGGC 1 cut(s) 684
BciVI GTATCC 1 cut(s) 380
BclI TGATCA 1 cut(s) 787
BcoDI GTCTC 1 cut(s) 866
BcuI ACTAGT 1 cut(s) 598
BfaI CTAG 4 cut(s) 51, 71, 158, 599
BfuAI ACCTGC 1 cut(s) 98
BfuI GTATCC 1 cut(s) 380
BmcAI AGTACT 1 cut(s) 879
BmiI GGNNCC 2 cut(s) 57, 335
BpiI GAAGAC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 731
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 344
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 2 cut(s) 460, 533
Bse3DI GCAATG 1 cut(s) 1040
BseGI GGATG 2 cut(s) 104, 413
BseLI CCNNNNNNNGG 2 cut(s) 120, 344
BseMI GCAATG 1 cut(s) 1040
BseNI ACTGG 2 cut(s) 460, 533
BseRI GAGGAG 1 cut(s) 53
Bsh1236I CGCG 2 cut(s) 767, 941
BsiHKAI GWGCWC 1 cut(s) 889
BsiSI CCGG 2 cut(s) 282, 732
BslI CCNNNNNNNGG 2 cut(s) 120, 344
BsmAI GTCTC 1 cut(s) 866
Bsp1286I GDGCHC 2 cut(s) 831, 889
Bsp143I GATC 6 cut(s) 16, 83, 360, 520, 787, 1021
BspACI CCGC 2 cut(s) 767, 941
BspFNI CGCG 2 cut(s) 767, 941
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 57, 335
BspMI ACCTGC 1 cut(s) 98
BspPI GGATC 4 cut(s) 78, 368, 515, 1029
BspQI GCTCTTC 2 cut(s) 894, 1136
BsrDI GCAATG 1 cut(s) 1040
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 2 cut(s) 460, 533
BssAI RCCGGY 1 cut(s) 281
BssMI GATC 6 cut(s) 16, 83, 360, 520, 787, 1021
Bst4CI ACNGT 4 cut(s) 48, 702, 877, 911
Bst6I CTCTTC 5 cut(s) 750, 894, 921, 1130, 1136
BstBAI YACGTR 1 cut(s) 396
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 819
BstF5I GGATG 2 cut(s) 104, 413
BstFNI CGCG 2 cut(s) 767, 941
BstHHI GCGC 2 cut(s) 281, 554
BstKTI GATC 6 cut(s) 19, 86, 363, 523, 790, 1024
BstMAI GTCTC 1 cut(s) 866
BstMBI GATC 6 cut(s) 16, 83, 360, 520, 787, 1021
BstSNI TACGTA 1 cut(s) 396
BstUI CGCG 2 cut(s) 767, 941
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 2 cut(s) 83, 1021
BstYI RGATCY 2 cut(s) 83, 1021
BsuI GTATCC 1 cut(s) 380
BtsCI GGATG 2 cut(s) 104, 413
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 3 cut(s) 84, 467, 516
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 283
CciI TCATGA 1 cut(s) 165
CfoI GCGC 2 cut(s) 281, 554
Cfr10I RCCGGY 1 cut(s) 281
Csp6I GTAC 2 cut(s) 878, 1109
CviAII CATG 2 cut(s) 166, 498
CviJI RGCY 8 cut(s) 184, 285, 322, 829, 904, 983, 1050, 1068
CviKI_1 RGCY 8 cut(s) 184, 285, 322, 829, 904, 983, 1050, 1068
CviQI GTAC 2 cut(s) 878, 1109
DdeI CTNAG 1 cut(s) 819
DpnI GATC 6 cut(s) 18, 85, 362, 522, 789, 1023
DpnII GATC 6 cut(s) 16, 83, 360, 520, 787, 1021
Eam1104I CTCTTC 5 cut(s) 750, 894, 921, 1130, 1136
EarI CTCTTC 5 cut(s) 750, 894, 921, 1130, 1136
Eco105I TACGTA 1 cut(s) 396
Eco24I GRGCYC 1 cut(s) 831
EcoT38I GRGCYC 1 cut(s) 831
FaeI CATG 2 cut(s) 169, 501
FalI AAGNNNNNCTT 2 cut(s) 1008, 1040
FatI CATG 2 cut(s) 165, 497
FbaI TGATCA 1 cut(s) 787
FokI GGATG 2 cut(s) 111, 420
FriOI GRGCYC 1 cut(s) 831
FspAI RTGCGCAY 1 cut(s) 553
FspBI CTAG 4 cut(s) 51, 71, 158, 599
FspI TGCGCA 1 cut(s) 553
GlaI GCGC 2 cut(s) 280, 553
HapII CCGG 2 cut(s) 282, 732
HhaI GCGC 2 cut(s) 281, 554
Hin1II CATG 2 cut(s) 169, 501
Hin6I GCGC 2 cut(s) 279, 552
HinP1I GCGC 2 cut(s) 279, 552
HinfI GANTC 4 cut(s) 124, 213, 424, 608
HpaII CCGG 2 cut(s) 282, 732
Hpy166II GTNNAC 1 cut(s) 1037
Hpy188I TCNGA 3 cut(s) 60, 613, 725
Hpy188III TCNNGA 2 cut(s) 166, 893
Hpy8I GTNNAC 1 cut(s) 1037
HpyAV CCTTC 1 cut(s) 862
HpyCH4III ACNGT 4 cut(s) 48, 702, 877, 911
HpyCH4IV ACGT 1 cut(s) 395
HpyCH4V TGCA 3 cut(s) 93, 1090, 1106
HpyF3I CTNAG 1 cut(s) 819
HpySE526I ACGT 1 cut(s) 395
Hsp92II CATG 2 cut(s) 169, 501
HspAI GCGC 2 cut(s) 279, 552
KroI GCCGGC 1 cut(s) 281
KroNI GCCGGC 1 cut(s) 283
Ksp22I TGATCA 1 cut(s) 787
Kzo9I GATC 6 cut(s) 16, 83, 360, 520, 787, 1021
LguI GCTCTTC 2 cut(s) 894, 1136
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 9 cut(s) 11, 103, 295, 367, 369, 473, 514, 654, 745
MaeI CTAG 4 cut(s) 51, 71, 158, 599
MaeII ACGT 1 cut(s) 395
MaeIII GTNAC 5 cut(s) 298, 410, 514, 771, 811
MalI GATC 6 cut(s) 18, 85, 362, 522, 789, 1023
MboI GATC 6 cut(s) 16, 83, 360, 520, 787, 1021
MfeI CAATTG 1 cut(s) 1053
MflI RGATCY 2 cut(s) 83, 1021
MhlI GDGCHC 2 cut(s) 831, 889
MluCI AATT 4 cut(s) 474, 493, 1053, 1101
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 6 cut(s) 31, 189, 227, 728, 1125, 1131
MroNI GCCGGC 1 cut(s) 281
MroXI GAANNNNTTC 3 cut(s) 123, 443, 851
MseI TTAA 5 cut(s) 510, 650, 750, 777, 857
MspI CCGG 2 cut(s) 282, 732
MunI CAATTG 1 cut(s) 1053
MvnI CGCG 2 cut(s) 767, 941
NaeI GCCGGC 1 cut(s) 283
NdeII GATC 6 cut(s) 16, 83, 360, 520, 787, 1021
NgoMIV GCCGGC 1 cut(s) 281
NlaIII CATG 2 cut(s) 169, 501
NlaIV GGNNCC 2 cut(s) 57, 335
NmuCI GTSAC 2 cut(s) 410, 514
NsbI TGCGCA 1 cut(s) 553
PagI TCATGA 1 cut(s) 165
PaqCI CACCTGC 1 cut(s) 98
PciSI GCTCTTC 2 cut(s) 894, 1136
PcsI WCGNNNNNNNCGW 1 cut(s) 477
PdiI GCCGGC 1 cut(s) 283
PdmI GAANNNNTTC 3 cut(s) 123, 443, 851
PfeI GAWTC 4 cut(s) 124, 213, 424, 608
Ppu21I YACGTR 1 cut(s) 396
PspN4I GGNNCC 2 cut(s) 57, 335
PsuI RGATCY 2 cut(s) 83, 1021
RsaI GTAC 2 cut(s) 879, 1110
RsaNI GTAC 2 cut(s) 878, 1109
SapI GCTCTTC 2 cut(s) 894, 1136
SaqAI TTAA 5 cut(s) 510, 650, 750, 777, 857
Sau3AI GATC 6 cut(s) 16, 83, 360, 520, 787, 1021
ScaI AGTACT 1 cut(s) 879
SduI GDGCHC 2 cut(s) 831, 889
SetI ASST 7 cut(s) 92, 200, 398, 739, 906, 985, 1070
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
SnaBI TACGTA 1 cut(s) 396
SpeI ACTAGT 1 cut(s) 598
Sse9I AATT 4 cut(s) 474, 493, 1053, 1101
SsiI CCGC 2 cut(s) 767, 941
SspMI CTAG 4 cut(s) 51, 71, 158, 599
TaaI ACNGT 4 cut(s) 48, 702, 877, 911
TaiI ACGT 1 cut(s) 398
TaqI TCGA 1 cut(s) 255
TasI AATT 4 cut(s) 474, 493, 1053, 1101
TatI WGTACW 1 cut(s) 877
TfiI GAWTC 4 cut(s) 124, 213, 424, 608
Tru1I TTAA 5 cut(s) 510, 650, 750, 777, 857
Tru9I TTAA 5 cut(s) 510, 650, 750, 777, 857
TscAI CASTG 3 cut(s) 84, 467, 523
TseFI GTSAC 2 cut(s) 410, 514
Tsp45I GTSAC 2 cut(s) 410, 514
TspDTI ATGAA 7 cut(s) 154, 486, 630, 636, 642, 683, 907
TspGWI ACGGA 2 cut(s) 136, 225
TspRI CASTG 3 cut(s) 84, 467, 523
XapI RAATTY 1 cut(s) 474
XmnI GAANNNNTTC 3 cut(s) 123, 443, 851
XspI CTAG 4 cut(s) 51, 71, 158, 599
ZrmI AGTACT 1 cut(s) 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.