AT3G23685

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
8527239 .. 8528317
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23685.1

Sequence Viewer

Length: 993 bp
ATGCACATTGGTCAAGCCGCAGCAAAGGAAGGTGAGTCTCAGATGATCGTGATGATGGGTAACAATCTTTCTTTAACGAGTATTATTCTCAATGGAGATCCATCTATAGAGCATAAAGGAAAACTTCCTTGCCTTGACGAACAAGTCAAGATATCTCAGTTCTATCACTGCGAGGGCTTACTGCTATGCATTTTAAAAGATGATTCTAGGTTTGTGGTTTGTAATCCGTATTTGGAGCAAACAAGGTGGATCGAACCAAGATATTCCCATCGTCCACACGGATGGGATAGGTTCTCTTACGCTCTTGGATACGTGAATACGGATTCTTGTTGTTACTACAAGTTGTTGGGGTTGATAGATTATTACTACAATGCACACGAGAAGCAATTCTTTTGGTATGGAATCTACGATTTTGACTCTGATTTATGGACTACTCTTGATGTCACTCCGCATTGGCGTATAGCGTTTTGTAACCGTGGCGTTTCTCTTAAGGGAAGCACGTACTGGTGTGCTGCAGAAAGGAACGTAGATGTCGATGAAGTCTTGGCCGATCGCTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTTAGTGGTGGGCATATTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGTTTTACTTCAGCACGATGAATCAAATCCATATGAGCTTGACTTATGGATTACGACCAAGATTGAGACTGGAGAGGAGAAGAAAGTCGCCTTTGGTTTTGATGGACGTAACCGCGAGAGAGTTATTGTCATTGGAGAGGCTGGATACTTGAGGGGATTGGATCTCGTTGGAGATTTTGGAGACCAAGAATGTAGGACTGATCTGTGCTCTTATGTTCCAAGTTTAGTACAAATCAAGCAACCTGAAGGAGGGGAATCGAAACAACAAAGCGATTTAGAAAAGTGTCGATATGATGAAAACATGTTGAGGCTTGTCTCACTCTAA

Protein Analysis

330

Amino Acids

37.95

Weight (kDa)

4.95

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 14 - 246 5.6e-78 F-box associated beta propeller domain
FBA_3 PF08268 48 - 243 6.4e-06 F-box associated beta propeller domain
FBA_1 PF07734 248 - 301 8.8e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
AccII CGCG 1 cut(s) 783
AciI CCGC 5 cut(s) 18, 449, 593, 668, 781
AclWI GGATC 3 cut(s) 92, 257, 837
AcoI YGGCCR 1 cut(s) 546
AcuI CTGAAG 2 cut(s) 662, 933
AfaI GTAC 2 cut(s) 503, 897
AfiI CCNNNNNNNGG 2 cut(s) 614, 917
AflII CTTAAG 1 cut(s) 488
AflIII ACRYGT 1 cut(s) 969
AluBI AGCT 2 cut(s) 664, 706
AluI AGCT 2 cut(s) 664, 706
Alw21I GWGCWC 1 cut(s) 878
Alw26I GTCTC 4 cut(s) 42, 728, 843, 988
AlwI GGATC 3 cut(s) 92, 257, 837
AoxI GGCC 1 cut(s) 546
ApeKI GCWGC 2 cut(s) 20, 512
Asp700I GAANNNNTTC 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 590
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 590
BauI CACGAG 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 878
BbvI GCAGC 2 cut(s) 32, 499
BccI CCATC 5 cut(s) 49, 109, 276, 276, 764
BceAI ACGGC 1 cut(s) 592
BciVI GTATCC 2 cut(s) 302, 806
BcoDI GTCTC 4 cut(s) 42, 728, 843, 988
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 2 cut(s) 105, 513
BfrI CTTAAG 1 cut(s) 488
BfuI GTATCC 2 cut(s) 302, 806
BisI GCNGC 3 cut(s) 18, 21, 513
BlsI GCNGC 3 cut(s) 19, 22, 514
Bme18I GGWCC 1 cut(s) 590
BmgT120I GGNCC 1 cut(s) 590
BpmI CTGGAG 1 cut(s) 759
BpuEI CTTGAG 1 cut(s) 838
BsaAI YACGTR 2 cut(s) 313, 501
BsaI GGTCTC 1 cut(s) 843
BsaJI CCNNGG 1 cut(s) 475
Bsc4I CCNNNNNNNGG 2 cut(s) 614, 917
Bse1I ACTGG 2 cut(s) 509, 742
BseDI CCNNGG 1 cut(s) 475
BseGI GGATG 1 cut(s) 287
BseLI CCNNNNNNNGG 2 cut(s) 614, 917
BseMII CTCAG 2 cut(s) 53, 170
BseNI ACTGG 2 cut(s) 509, 742
BseRI GAGGAG 1 cut(s) 758
BseXI GCAGC 2 cut(s) 32, 499
Bsh1236I CGCG 1 cut(s) 783
Bsh1285I CGRYCG 1 cut(s) 553
BshFI GGCC 1 cut(s) 548
BsiEI CGRYCG 1 cut(s) 553
BsiHKAI GWGCWC 1 cut(s) 878
BslI CCNNNNNNNGG 2 cut(s) 614, 917
BsmAI GTCTC 4 cut(s) 42, 728, 843, 988
BsnI GGCC 1 cut(s) 548
Bso31I GGTCTC 1 cut(s) 843
Bsp1286I GDGCHC 1 cut(s) 878
Bsp143I GATC 6 cut(s) 45, 97, 249, 550, 829, 868
BspACI CCGC 5 cut(s) 18, 449, 593, 668, 781
BspANI GGCC 1 cut(s) 548
BspCNI CTCAG 2 cut(s) 52, 169
BspFNI CGCG 1 cut(s) 783
BspMAI CTGCAG 1 cut(s) 517
BspPI GGATC 3 cut(s) 92, 257, 837
BspTI CTTAAG 1 cut(s) 488
BspTNI GGTCTC 1 cut(s) 843
BsrI ACTGG 2 cut(s) 509, 742
BssECI CCNNGG 1 cut(s) 475
BssMI GATC 6 cut(s) 45, 97, 249, 550, 829, 868
BssSI CACGAG 1 cut(s) 377
Bst2BI CACGAG 1 cut(s) 377
Bst4CI ACNGT 2 cut(s) 476, 632
Bst6I CTCTTC 1 cut(s) 651
BstAFI CTTAAG 1 cut(s) 488
BstBAI YACGTR 2 cut(s) 313, 501
BstC8I GCNNGC 1 cut(s) 666
BstDEI CTNAG 2 cut(s) 39, 156
BstDSI CCRYGG 1 cut(s) 475
BstENI CCTNNNNNAGG 1 cut(s) 915
BstF5I GGATG 1 cut(s) 287
BstFNI CGCG 1 cut(s) 783
BstKTI GATC 6 cut(s) 48, 100, 252, 553, 832, 871
BstMAI GTCTC 4 cut(s) 42, 728, 843, 988
BstMBI GATC 6 cut(s) 45, 97, 249, 550, 829, 868
BstMCI CGRYCG 1 cut(s) 553
BstNSI RCATGY 1 cut(s) 973
BstSFI CTRYAG 2 cut(s) 105, 513
BstUI CGCG 1 cut(s) 783
BstV1I GCAGC 2 cut(s) 32, 499
BstX2I RGATCY 2 cut(s) 97, 829
BstXI CCANNNNNNTGG 1 cut(s) 282
BstYI RGATCY 2 cut(s) 97, 829
BsuI GTATCC 2 cut(s) 302, 806
BsuRI GGCC 1 cut(s) 548
BtgI CCRYGG 1 cut(s) 475
BtsCI GGATG 1 cut(s) 287
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 666
Cfr13I GGNCC 1 cut(s) 590
Csp6I GTAC 2 cut(s) 502, 896
CspCI CAANNNNNGTGG 2 cut(s) 227, 262
CviAII CATG 1 cut(s) 970
CviJI RGCY 7 cut(s) 17, 177, 548, 664, 706, 809, 979
CviKI_1 RGCY 7 cut(s) 17, 177, 548, 664, 706, 809, 979
CviQI GTAC 2 cut(s) 502, 896
DdeI CTNAG 2 cut(s) 39, 156
DpnI GATC 6 cut(s) 47, 99, 251, 552, 831, 870
DpnII GATC 6 cut(s) 45, 97, 249, 550, 829, 868
DraI TTTAAA 1 cut(s) 195
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 546
Eam1104I CTCTTC 1 cut(s) 651
EarI CTCTTC 1 cut(s) 651
Eco31I GGTCTC 1 cut(s) 843
Eco32I GATATC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 590
Eco57I CTGAAG 2 cut(s) 662, 933
EcoNI CCTNNNNNAGG 1 cut(s) 915
EcoRV GATATC 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 191
FaeI CATG 1 cut(s) 973
FalI AAGNNNNNCTT 6 cut(s) 108, 140, 374, 406, 648, 680
FatI CATG 1 cut(s) 969
FauNDI CATATG 1 cut(s) 700
Fnu4HI GCNGC 3 cut(s) 18, 21, 513
FokI GGATG 1 cut(s) 294
Fsp4HI GCNGC 3 cut(s) 18, 21, 513
FspBI CTAG 1 cut(s) 207
GluI GCNGC 3 cut(s) 18, 21, 513
GsuI CTGGAG 1 cut(s) 759
HaeIII GGCC 1 cut(s) 548
Hin1II CATG 1 cut(s) 973
HindIII AAGCTT 1 cut(s) 662
HinfI GANTC 7 cut(s) 35, 203, 323, 402, 416, 689, 923
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 2 cut(s) 42, 421
Hpy188III TCNNGA 3 cut(s) 49, 148, 437
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 2 cut(s) 23, 908
HpyCH4III ACNGT 2 cut(s) 476, 632
HpyCH4IV ACGT 5 cut(s) 312, 500, 525, 638, 775
HpyCH4V TGCA 4 cut(s) 4, 189, 374, 515
HpyF3I CTNAG 2 cut(s) 39, 156
HpySE526I ACGT 5 cut(s) 312, 500, 525, 638, 775
Hsp92II CATG 1 cut(s) 973
Kzo9I GATC 6 cut(s) 45, 97, 249, 550, 829, 868
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 4 cut(s) 490, 723, 795, 924
Lsp1109I GCAGC 2 cut(s) 32, 499
MaeI CTAG 1 cut(s) 207
MaeII ACGT 5 cut(s) 312, 500, 525, 638, 775
MaeIII GTNAC 5 cut(s) 59, 332, 442, 470, 776
MalI GATC 6 cut(s) 47, 99, 251, 552, 831, 870
MboI GATC 6 cut(s) 45, 97, 249, 550, 829, 868
MboII GAAGA 2 cut(s) 668, 760
MflI RGATCY 2 cut(s) 97, 829
MhlI GDGCHC 1 cut(s) 878
MluCI AATT 1 cut(s) 386
MlyI GAGTC 2 cut(s) 44, 410
MmeI TCCRAC 1 cut(s) 817
MnlI CCTC 7 cut(s) 166, 612, 736, 799, 813, 911, 969
Mph1103I ATGCAT 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 386
MseI TTAA 4 cut(s) 74, 194, 489, 557
MslI CAYNNNNRTG 1 cut(s) 280
MspCI CTTAAG 1 cut(s) 488
MvnI CGCG 1 cut(s) 783
NdeI CATATG 1 cut(s) 700
NdeII GATC 6 cut(s) 45, 97, 249, 550, 829, 868
NlaIII CATG 1 cut(s) 973
NmuCI GTSAC 1 cut(s) 442
NsiI ATGCAT 1 cut(s) 191
NspI RCATGY 1 cut(s) 973
PciI ACATGT 1 cut(s) 969
PcsI WCGNNNNNNNCGW 1 cut(s) 531
PdmI GAANNNNTTC 1 cut(s) 386
PfeI GAWTC 5 cut(s) 203, 323, 402, 689, 923
PkrI GCNGC 3 cut(s) 19, 22, 514
Ple19I CGATCG 1 cut(s) 553
PleI GAGTC 2 cut(s) 43, 410
PpsI GAGTC 2 cut(s) 43, 410
Ppu21I YACGTR 2 cut(s) 313, 501
PscI ACATGT 1 cut(s) 969
PspPI GGNCC 1 cut(s) 590
PstI CTGCAG 1 cut(s) 517
PsuI RGATCY 2 cut(s) 97, 829
PvuI CGATCG 1 cut(s) 553
RsaI GTAC 2 cut(s) 503, 897
RsaNI GTAC 2 cut(s) 502, 896
RseI CAYNNNNRTG 1 cut(s) 280
SaqAI TTAA 4 cut(s) 74, 194, 489, 557
SatI GCNGC 3 cut(s) 18, 21, 513
Sau3AI GATC 6 cut(s) 45, 97, 249, 550, 829, 868
Sau96I GGNCC 1 cut(s) 590
SchI GAGTC 2 cut(s) 44, 410
SduI GDGCHC 1 cut(s) 878
SfcI CTRYAG 2 cut(s) 105, 513
SinI GGWCC 1 cut(s) 590
SmiMI CAYNNNNRTG 1 cut(s) 280
SmlI CTYRAG 2 cut(s) 488, 817
SmoI CTYRAG 2 cut(s) 488, 817
Sse9I AATT 1 cut(s) 386
SsiI CCGC 5 cut(s) 18, 449, 593, 668, 781
SspMI CTAG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 476, 632
TaiI ACGT 5 cut(s) 315, 503, 528, 641, 778
TaqI TCGA 4 cut(s) 252, 534, 926, 955
TasI AATT 1 cut(s) 386
TatI WGTACW 1 cut(s) 895
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 5 cut(s) 203, 323, 402, 689, 923
Tru1I TTAA 4 cut(s) 74, 194, 489, 557
Tru9I TTAA 4 cut(s) 74, 194, 489, 557
TscAI CASTG 1 cut(s) 173
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 2 cut(s) 20, 512
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 3 cut(s) 552, 702, 978
TspGWI ACGGA 3 cut(s) 216, 294, 335
TspRI CASTG 1 cut(s) 173
Vha464I CTTAAG 1 cut(s) 488
VpaK11BI GGWCC 1 cut(s) 590
XagI CCTNNNNNAGG 1 cut(s) 915
XceI RCATGY 1 cut(s) 973
XmnI GAANNNNTTC 1 cut(s) 386
XspI CTAG 1 cut(s) 207
Zsp2I ATGCAT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.