AT3G18905

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
6520205 .. 6520792
588 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18905.1

Sequence Viewer

Length: 588 bp
ATGATCCCTCCAGGCGTGAGCTTTGGATACTCTGAACTCAGTGTGTCTTTGAAGGGAAATACTTACTGGTTGGCTATAGTTGTAACAGAAACGCCCCGCACCATATCATTGCTCAAGTTTGATTTTTCAATAGAGAAATCTGTACTTGTGCCTCTTCCCTATCATAGTCTTCAGAGTCGTCGTTTTGAAGCTAGTAGCCTTTCCGTTGTTAGAGAAGAGAAACTTTCTGTGTTATTACAGCGAGATATAAGTTCCAAGACTGAGATATGGGTGACAAGTAAGATTGATGACACCACCAAAGTGGTGTCTTGGAGCAAGATCTTAGCATTGGATTTGAGCCCTCATCTTCAGATTTGGAATGATGCAAGTTTCTTGATAGGCGAAGAGAAGAAAGTCATCATGTGTGAGAGATTGGTTGATGTGCACACGTCCAAAGTCATGGTCTACATTGTTGGGGAGAACAATGTTGTCACACAAGTGGAATTTGGGGTTGTTGAAATGGATGGATGTTGGGCAGTTATCTTTAATTATGTTCCAAGTTTGATTCAAATCGAGCAAGCTGGAGGCAATAGGAACATAGGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 FBA_1 Lzipper-MIP1

Protein Analysis

195

Amino Acids

21.91

Weight (kDa)

5.66

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 8 - 184 1.2e-49 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 444
AciI CCGC 1 cut(s) 97
AcsI RAATTY 1 cut(s) 482
AcuI CTGAAG 2 cut(s) 155, 332
AfaI GTAC 1 cut(s) 144
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 5 cut(s) 52, 129, 188, 497, 548
AjiI CACGTC 1 cut(s) 429
AjnI CCWGG 1 cut(s) 10
AleI CACNNNNGTG 2 cut(s) 299, 476
AluBI AGCT 3 cut(s) 21, 191, 560
AluI AGCT 3 cut(s) 21, 191, 560
Alw21I GWGCWC 1 cut(s) 426
Alw44I GTGCAC 1 cut(s) 422
ApaLI GTGCAC 1 cut(s) 422
ApoI RAATTY 1 cut(s) 482
ArsI GACNNNNNNTTYG 2 cut(s) 426, 458
AsuHPI GGTGA 1 cut(s) 283
BaeGI GKGCMC 1 cut(s) 426
BanII GRGCYC 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 426
BccI CCATC 1 cut(s) 497
BciT130I CCWGG 1 cut(s) 12
BciVI GTATCC 1 cut(s) 20
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 75
BfuI GTATCC 1 cut(s) 20
BglII AGATCT 1 cut(s) 318
Bme1390I CCNGG 1 cut(s) 12
BmgBI CACGTC 1 cut(s) 429
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 1 cut(s) 352
BpiI GAAGAC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 548
Bse1I ACTGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 107
Bse8I GATNNNNATC 1 cut(s) 548
BseBI CCWGG 1 cut(s) 12
BseGI GGATG 2 cut(s) 508, 512
BseJI GATNNNNATC 1 cut(s) 548
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 2 cut(s) 52, 252
BseNI ACTGG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 426
Bsp1286I GDGCHC 2 cut(s) 341, 426
Bsp143I GATC 2 cut(s) 3, 318
BspACI CCGC 1 cut(s) 97
BspCNI CTCAG 2 cut(s) 51, 253
BsrDI GCAATG 1 cut(s) 107
BsrI ACTGG 1 cut(s) 71
BssMI GATC 2 cut(s) 3, 318
Bst2UI CCWGG 1 cut(s) 12
Bst6I CTCTTC 3 cut(s) 159, 210, 378
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 3 cut(s) 38, 261, 322
BstF5I GGATG 2 cut(s) 508, 512
BstKTI GATC 2 cut(s) 6, 321
BstMBI GATC 2 cut(s) 3, 318
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 75
BstSLI GKGCMC 1 cut(s) 426
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 318
BstXI CCANNNNNNTGG 2 cut(s) 301, 439
BstYI RGATCY 1 cut(s) 318
BsuI GTATCC 1 cut(s) 20
BtrI CACGTC 1 cut(s) 429
BtsCI GGATG 2 cut(s) 508, 512
BtsIMutI CAGTG 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 558
Csp6I GTAC 1 cut(s) 143
CviAII CATG 2 cut(s) 400, 439
CviJI RGCY 6 cut(s) 21, 74, 191, 198, 339, 560
CviKI_1 RGCY 6 cut(s) 21, 74, 191, 198, 339, 560
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 3 cut(s) 38, 261, 322
DpnI GATC 2 cut(s) 5, 320
DpnII GATC 2 cut(s) 3, 318
Eam1104I CTCTTC 3 cut(s) 159, 210, 378
EarI CTCTTC 3 cut(s) 159, 210, 378
Eco24I GRGCYC 1 cut(s) 341
Eco57I CTGAAG 2 cut(s) 155, 332
EcoRII CCWGG 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 341
FaeI CATG 2 cut(s) 403, 442
FaiI YATR 9 cut(s) 77, 104, 165, 248, 268, 401, 440, 531, 578
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 2 cut(s) 399, 438
FauI CCCGC 1 cut(s) 104
FblI GTMKAC 1 cut(s) 444
FokI GGATG 2 cut(s) 515, 519
FriOI GRGCYC 1 cut(s) 341
FspBI CTAG 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 582
Hin1II CATG 2 cut(s) 403, 442
HinfI GANTC 2 cut(s) 175, 544
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 2 cut(s) 424, 445
Hpy188I TCNGA 3 cut(s) 34, 174, 351
Hpy188III TCNNGA 1 cut(s) 373
Hpy8I GTNNAC 2 cut(s) 424, 445
Hpy99I CGWCG 1 cut(s) 183
HpyAV CCTTC 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 428
HpyCH4V TGCA 2 cut(s) 365, 424
HpyF3I CTNAG 3 cut(s) 38, 261, 322
HpySE526I ACGT 1 cut(s) 428
Hsp92II CATG 2 cut(s) 403, 442
Kzo9I GATC 2 cut(s) 3, 318
LmnI GCTCC 1 cut(s) 312
LpnPI CCDG 3 cut(s) 24, 52, 546
LweI GCATC 1 cut(s) 352
MaeI CTAG 1 cut(s) 192
MaeII ACGT 1 cut(s) 428
MaeIII GTNAC 3 cut(s) 82, 271, 469
MalI GATC 2 cut(s) 5, 320
MboI GATC 2 cut(s) 3, 318
MboII GAAGA 6 cut(s) 146, 161, 227, 338, 395, 400
MflI RGATCY 1 cut(s) 318
MhlI GDGCHC 2 cut(s) 341, 426
MluCI AATT 2 cut(s) 482, 526
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 4 cut(s) 18, 162, 351, 557
MseI TTAA 1 cut(s) 525
MslI CAYNNNNRTG 2 cut(s) 299, 476
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
NdeII GATC 2 cut(s) 3, 318
NlaIII CATG 2 cut(s) 403, 442
NmuCI GTSAC 2 cut(s) 271, 469
OliI CACNNNNGTG 2 cut(s) 299, 476
PfeI GAWTC 1 cut(s) 544
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 318
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
RseI CAYNNNNRTG 2 cut(s) 299, 476
SaqAI TTAA 1 cut(s) 525
Sau3AI GATC 2 cut(s) 3, 318
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 2 cut(s) 341, 426
SetI ASST 5 cut(s) 23, 193, 431, 562, 583
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 75
SmiMI CAYNNNNRTG 2 cut(s) 299, 476
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 2 cut(s) 482, 526
SsiI CCGC 1 cut(s) 97
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 10
TaiI ACGT 1 cut(s) 431
TaqI TCGA 1 cut(s) 552
TasI AATT 2 cut(s) 482, 526
TatI WGTACW 1 cut(s) 142
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 1 cut(s) 525
Tru9I TTAA 1 cut(s) 525
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 2 cut(s) 271, 469
Tsp45I GTSAC 2 cut(s) 271, 469
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 1 cut(s) 46
VneI GTGCAC 1 cut(s) 422
XapI RAATTY 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 444
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.