AT1G12190

Weak chloroplast movement under blue light

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Reverse (-)
4132967 .. 4134094
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12190.1

Sequence Viewer

Length: 1128 bp
ATGGCGTGTGTGAAATTTCCGTGGGAATTGATGGAAGAGATACTCTATCGTGTTCCATCTCTATCTCTTTCCCGATTCAAAACTGTTTCCAAAGAATGGAACACACTTCTCAACGATAAGACGTTCATCAAGAAACACTTGGCTCTCGTCCGTCCTCAATTCCGTTTATGGACCAATTCCAAGGTTTATTCGGTTGATGTCAGTCTAAACGATGATCCAAATATAGAGCTGCGTGAATTGCCCTTAGATATTCCTTATGTAATTGATCATAGGACTACAAACTTTCTTCCTTGCAATGACTTATTGTTTTGTGCCTCATGGTGGAGCAATAAAGCTGTTGTTTGGAACCCGTCGTTGAGACAAACTAGATTGATTAAATCGGGGGAAGAACATTTCCGGTTTGGTGGCATAGGATATGATAGTGGTAGACCCGGAAAAGGTTACCATATATTTGGGCATAGTCATAGTCGGCTAAGTGTTAATGGAAACACCTCTAAGTTTATTAAAAGATTTTATATCACCAAGTTTGAAAGTAATGCGTGGAAATGTATTGATGATGTTTCCCTTGGAGAGAATTCCATAGGAGGAGATTCATTAGATAATAATAATGTATCTTTGAATGGAAATTTGTATTGGACTACTAATAGCTATGATACTGATGAATATCTCATCCAAAGTTTCGATTTTTCCAAAGAGATATTCAAAATCTTTTGCGTTCTACCAAGGAAGAAGGATTCTTCTGATATTCCAGTCCTCTCAGTTTTTAGGGGAGATCGACTTTCGGTATTACATAAATTTAAAGGAACAAATAACATGGAGATTTGGGTGACAAAGAACAAGATTAATGAGAGTGTAAAAGCTGTGGTGTGGATGATGTTCATGACAGTTTCAATACCTATATATAAGGACTCTAAGCCAAGTTACTTTATCAATGATATCTACGAAAAGAGACTCGTCATGTGTTGCAGTGACGAAAATGGAAAGGCTTGCGTTTATATTGTGAAGGACCAAGCAAGGAAAAAGATTCAACTAGGTTTTCATGTTAGTGAGTTTAGTCATTGTTTCTATGATCCCAGCTTGATTCCTATTCCTTCAGAGACTTCAGGACAAAAAATAAGCAATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PPR_2 WEMBL

Protein Analysis

375

Amino Acids

43.36

Weight (kDa)

8.79

Isoelectric Point (pI)

29.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 54 - 363 5.8e-73 F-box associated beta propeller domain
FBA_3 PF08268 101 - 282 5.8e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 96
AccI GTMKAC 1 cut(s) 427
AclWI GGATC 2 cut(s) 209, 1064
AcsI RAATTY 4 cut(s) 14, 574, 625, 794
AcuI CTGAAG 2 cut(s) 1077, 1086
AfiI CCNNNNNNNGG 3 cut(s) 96, 321, 437
AgsI TTSAA 6 cut(s) 79, 530, 619, 703, 891, 1028
AjuI GAANNNNNNNTTGG 4 cut(s) 616, 648, 683, 715
AluBI AGCT 5 cut(s) 229, 335, 648, 860, 1077
AluI AGCT 5 cut(s) 229, 335, 648, 860, 1077
Alw26I GTCTC 3 cut(s) 352, 943, 1091
AlwI GGATC 2 cut(s) 209, 1064
ApeKI GCWGC 1 cut(s) 229
ApoI RAATTY 4 cut(s) 14, 574, 625, 794
AseI ATTAAT 1 cut(s) 843
AspS9I GGNCC 2 cut(s) 171, 1006
AsuC2I CCSGG 1 cut(s) 432
AsuHPI GGTGA 2 cut(s) 511, 838
AvaII GGWCC 2 cut(s) 171, 1006
BbvI GCAGC 1 cut(s) 216
BccI CCATC 2 cut(s) 25, 64
BclI TGATCA 1 cut(s) 265
BcnI CCSGG 1 cut(s) 432
BcoDI GTCTC 3 cut(s) 352, 943, 1091
BfaI CTAG 2 cut(s) 366, 1031
BisI GCNGC 1 cut(s) 230
BlsI GCNGC 1 cut(s) 231
Bme1390I CCNGG 1 cut(s) 432
Bme18I GGWCC 2 cut(s) 171, 1006
BmgT120I GGNCC 2 cut(s) 171, 1006
BmiI GGNNCC 1 cut(s) 347
BmrFI CCNGG 1 cut(s) 432
BpuMI CCSGG 1 cut(s) 432
BsaBI GATNNNNATC 1 cut(s) 663
BsaJI CCNNGG 4 cut(s) 20, 180, 565, 722
BsaWI WCCGGW 1 cut(s) 396
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 321, 437
Bse1I ACTGG 1 cut(s) 749
Bse3DI GCAATG 1 cut(s) 301
Bse8I GATNNNNATC 1 cut(s) 663
BseDI CCNNGG 4 cut(s) 20, 180, 565, 722
BseGI GGATG 2 cut(s) 669, 876
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 3 cut(s) 96, 321, 437
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 771
BseNI ACTGG 1 cut(s) 749
BseRI GAGGAG 1 cut(s) 600
BseXI GCAGC 1 cut(s) 216
BseYI CCCAGC 1 cut(s) 1073
BsiSI CCGG 2 cut(s) 397, 432
BslI CCNNNNNNNGG 3 cut(s) 96, 321, 437
BsmAI GTCTC 3 cut(s) 352, 943, 1091
Bsp143I GATC 4 cut(s) 214, 265, 772, 1069
BspCNI CTCAG 1 cut(s) 770
BspHI TCATGA 1 cut(s) 879
BspLI GGNNCC 1 cut(s) 347
BspPI GGATC 2 cut(s) 209, 1064
BsrDI GCAATG 1 cut(s) 301
BsrI ACTGG 1 cut(s) 749
BssECI CCNNGG 4 cut(s) 20, 180, 565, 722
BssMI GATC 4 cut(s) 214, 265, 772, 1069
BssT1I CCWWGG 3 cut(s) 180, 565, 722
Bst4CI ACNGT 2 cut(s) 85, 886
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 988
BstDEI CTNAG 5 cut(s) 244, 473, 495, 757, 912
BstDSI CCRYGG 1 cut(s) 20
BstEII GGTNACC 1 cut(s) 440
BstF5I GGATG 2 cut(s) 669, 876
BstKTI GATC 4 cut(s) 217, 268, 775, 1072
BstMAI GTCTC 3 cut(s) 352, 943, 1091
BstMBI GATC 4 cut(s) 214, 265, 772, 1069
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstPI GGTNACC 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 430
BstV1I GCAGC 1 cut(s) 216
BstXI CCANNNNNNTGG 1 cut(s) 452
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 669, 876
BtsI GCAGTG 1 cut(s) 973
BtsIMutI CAGTG 1 cut(s) 973
Cac8I GCNNGC 1 cut(s) 988
CciI TCATGA 1 cut(s) 879
Cfr13I GGNCC 2 cut(s) 171, 1006
CviAII CATG 5 cut(s) 318, 814, 880, 958, 1040
CviJI RGCY 9 cut(s) 143, 229, 335, 472, 648, 860, 916, 986, 1077
CviKI_1 RGCY 9 cut(s) 143, 229, 335, 472, 648, 860, 916, 986, 1077
DdeI CTNAG 5 cut(s) 244, 473, 495, 757, 912
DpnI GATC 4 cut(s) 216, 267, 774, 1071
DpnII GATC 4 cut(s) 214, 265, 772, 1069
DraI TTTAAA 1 cut(s) 799
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 3 cut(s) 180, 565, 722
Eco32I GATATC 1 cut(s) 937
Eco47I GGWCC 2 cut(s) 171, 1006
Eco57I CTGAAG 2 cut(s) 1077, 1086
Eco91I GGTNACC 1 cut(s) 440
EcoO65I GGTNACC 1 cut(s) 440
EcoRI GAATTC 1 cut(s) 574
EcoRV GATATC 1 cut(s) 937
EcoT14I CCWWGG 3 cut(s) 180, 565, 722
ErhI CCWWGG 3 cut(s) 180, 565, 722
FaeI CATG 5 cut(s) 321, 817, 883, 961, 1043
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FatI CATG 5 cut(s) 317, 813, 879, 957, 1039
FbaI TGATCA 1 cut(s) 265
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 1 cut(s) 230
FokI GGATG 2 cut(s) 656, 883
Fsp4HI GCNGC 1 cut(s) 230
FspBI CTAG 2 cut(s) 366, 1031
GluI GCNGC 1 cut(s) 230
GsaI CCCAGC 1 cut(s) 1077
HapII CCGG 2 cut(s) 397, 432
Hin1II CATG 5 cut(s) 321, 817, 883, 961, 1043
HinfI GANTC 7 cut(s) 75, 590, 734, 908, 951, 1024, 1081
HpaII CCGG 2 cut(s) 397, 432
HphI GGTGA 2 cut(s) 511, 838
Hpy166II GTNNAC 1 cut(s) 428
Hpy188I TCNGA 2 cut(s) 742, 1096
Hpy188III TCNNGA 4 cut(s) 72, 130, 880, 1104
Hpy8I GTNNAC 1 cut(s) 428
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 3 cut(s) 724, 997, 1101
HpyCH4III ACNGT 2 cut(s) 85, 886
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 2 cut(s) 294, 966
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpyF3I CTNAG 5 cut(s) 244, 473, 495, 757, 912
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 5 cut(s) 321, 817, 883, 961, 1043
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 4 cut(s) 214, 265, 772, 1069
LmnI GCTCC 1 cut(s) 324
LpnPI CCDG 5 cut(s) 410, 445, 762, 1087, 1089
Lsp1109I GCAGC 1 cut(s) 216
MaeI CTAG 2 cut(s) 366, 1031
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 4 cut(s) 440, 826, 920, 968
MalI GATC 4 cut(s) 216, 267, 774, 1071
MboI GATC 4 cut(s) 214, 265, 772, 1069
MboII GAAGA 5 cut(s) 47, 278, 398, 729, 739
MluCI AATT 9 cut(s) 14, 26, 158, 175, 236, 261, 574, 625, 794
MlyI GAGTC 2 cut(s) 902, 945
MnlI CCTC 5 cut(s) 165, 325, 502, 578, 764
MseI TTAA 5 cut(s) 375, 480, 504, 798, 843
MslI CAYNNNNRTG 1 cut(s) 1044
MspI CCGG 2 cut(s) 397, 432
MspR9I CCNGG 1 cut(s) 432
MwoI GCNNNNNNNGC 1 cut(s) 238
NciI CCSGG 1 cut(s) 432
NdeII GATC 4 cut(s) 214, 265, 772, 1069
NlaIII CATG 5 cut(s) 321, 817, 883, 961, 1043
NlaIV GGNNCC 1 cut(s) 347
NmuCI GTSAC 2 cut(s) 826, 968
PagI TCATGA 1 cut(s) 879
PfeI GAWTC 5 cut(s) 75, 590, 734, 1024, 1081
PflMI CCANNNNNTGG 1 cut(s) 96
PkrI GCNGC 1 cut(s) 231
PleI GAGTC 2 cut(s) 902, 945
PpsI GAGTC 2 cut(s) 902, 945
PshBI ATTAAT 1 cut(s) 843
PspEI GGTNACC 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 1073
PspN4I GGNNCC 1 cut(s) 347
PspPI GGNCC 2 cut(s) 171, 1006
RseI CAYNNNNRTG 1 cut(s) 1044
SaqAI TTAA 5 cut(s) 375, 480, 504, 798, 843
SatI GCNGC 1 cut(s) 230
Sau3AI GATC 4 cut(s) 214, 265, 772, 1069
Sau96I GGNCC 2 cut(s) 171, 1006
SchI GAGTC 2 cut(s) 902, 945
ScrFI CCNGG 1 cut(s) 432
SinI GGWCC 2 cut(s) 171, 1006
SmiMI CAYNNNNRTG 1 cut(s) 1044
Sse9I AATT 9 cut(s) 14, 26, 158, 175, 236, 261, 574, 625, 794
SspMI CTAG 2 cut(s) 366, 1031
StyD4I CCNGG 1 cut(s) 430
StyI CCWWGG 3 cut(s) 180, 565, 722
TaaI ACNGT 2 cut(s) 85, 886
TaiI ACGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 681, 775
TasI AATT 9 cut(s) 14, 26, 158, 175, 236, 261, 574, 625, 794
TfiI GAWTC 5 cut(s) 75, 590, 734, 1024, 1081
Tru1I TTAA 5 cut(s) 375, 480, 504, 798, 843
Tru9I TTAA 5 cut(s) 375, 480, 504, 798, 843
TscAI CASTG 1 cut(s) 973
TseFI GTSAC 2 cut(s) 826, 968
TseI GCWGC 1 cut(s) 229
Tsp45I GTSAC 2 cut(s) 826, 968
TspDTI ATGAA 5 cut(s) 115, 582, 675, 868, 1028
TspGWI ACGGA 3 cut(s) 9, 140, 152
TspRI CASTG 1 cut(s) 973
Van91I CCANNNNNTGG 1 cut(s) 96
VpaK11BI GGWCC 2 cut(s) 171, 1006
VspI ATTAAT 1 cut(s) 843
XapI RAATTY 4 cut(s) 14, 574, 625, 794
XmiI GTMKAC 1 cut(s) 427
XspI CTAG 2 cut(s) 366, 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.