AT3G16740

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
5699310 .. 5700991
1682 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16740.1

Sequence Viewer

Length: 1176 bp
ATGGTTCAGATTTCCGATCTTCCACGGGATTTGACAGAGGAGGTGCTCTCTAGGATTCCGGTGACATCTATGAGAGCAGTGAGATTTACTTGCAAAAAGTGGAACACCTTATCGAAAGATCGGAGCTTTACAAAGAAGCACCTGCGTGGAGCAAGAGCAGCAGCAAAGAAGAAGCAGACGAAGGAGTTTCAGGTGATCATGATGATTCAATTTAGGGTTTATTTATACAGCGTCAACCTCCTTAATCCATCAATAGAGCGTATAGGTAAACTTATTAGCCTAGACGTTGAAGATCATGTCGACATATCTAAAATCTTTCACTGCGGCGGTTTATTGTTATGTATCACCAAAGACATATCTAGGCTTGTGGTTTGGAACCCTTATTCTGGGCAAACAAGGTGGATCAAACCTAGAAATTCTTACCACAGATTGGACAGGTACGCTTTAGGATACGAAGAGAAGAACAAGTCGTGTCGTTGCTACAAAATCTTGAGATTTATGGATGATTACGAGGATGACAGGGCACTGCGCCTAATTCGTGAGTTTGAAATCTACGACTTAAACTCTGATTCATGGAAGGTTGTTAATGTCACTCCCGACTGGGATGTAGAGTTTTATCACCGTGGCCTGTCTCTCAAGGGGAATACTTACTGGTTTGCTCAAGAGAAGCTTCCACCATTACCACGCGGAAGAGTGATAACAATATCAGATATGGCTGATTTCTTACTCTGTTTTGATTTTACAAGGGAGAGATTTGGACCGCGCCTGCCTCTGCCTTTCCACTCTTTTGTTGAAGATACTGTGACTCTATCCAGTGTTAGAGATAAGAAACTTGCAGTGTTATTTCAGCCATGTAGTGCATCTACCGTGAAGATATGGATTAGTCGCAAGATTGAGCCCAATGCAGTGTCGTGGAGGAAGGTTTTCTTAGCGGTTGATATGAAATCACTCACTGGTTTTCAGTTTGACATTAACGCTGCAAGTTTCTTTGTTGACGAGAAGAAAAAGGTCGCCATGGTTCTGGATAAAGACAGGTTCAGTTATAAATTTACTCGCAACATAGCTTACATCATTGGGAAGAAGGGGTACTTCGAAAAAGTGGATCTTGGAGAATCTACAGTTTCAAGTTGTGCCTCACTTGTGTGCTCTTACGTTCCAAGCTCAGTGCAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

391

Amino Acids

45.55

Weight (kDa)

9.44

Isoelectric Point (pI)

26.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 45 9.1e-09 F-box domain
FBA_1 PF07734 64 - 391 1.3e-115 F-box associated beta propeller domain
FBA_3 PF08268 111 - 314 5.7e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1044
AarI CACCTGC 1 cut(s) 150
Acc36I ACCTGC 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 430
AccI GTMKAC 1 cut(s) 300
AccII CGCG 2 cut(s) 687, 763
AciI CCGC 5 cut(s) 324, 327, 687, 761, 932
AclWI GGATC 2 cut(s) 410, 1110
AcsI RAATTY 2 cut(s) 415, 1046
AfaI GTAC 2 cut(s) 440, 1088
AfiI CCNNNNNNNGG 2 cut(s) 386, 430
AgsI TTSAA 5 cut(s) 209, 290, 548, 794, 1125
AleI CACNNNNGTG 2 cut(s) 144, 1141
AluBI AGCT 4 cut(s) 126, 670, 1064, 1161
AluI AGCT 4 cut(s) 126, 670, 1064, 1161
Alw21I GWGCWC 2 cut(s) 48, 1148
Alw26I GTCTC 1 cut(s) 636
AlwI GGATC 2 cut(s) 410, 1110
AoxI GGCC 1 cut(s) 625
ApeKI GCWGC 3 cut(s) 158, 161, 977
ApoI RAATTY 2 cut(s) 415, 1046
Asp700I GAANNNNTTC 1 cut(s) 923
AspLEI GCGC 2 cut(s) 531, 765
AspS9I GGNCC 1 cut(s) 758
AsuHPI GGTGA 4 cut(s) 73, 205, 337, 611
AsuII TTCGAA 1 cut(s) 1092
AvaII GGWCC 1 cut(s) 758
BaeGI GKGCMC 1 cut(s) 526
BanII GRGCYC 1 cut(s) 900
BarI GAAGNNNNNNTAC 2 cut(s) 1070, 1102
Bbv12I GWGCWC 2 cut(s) 48, 1148
BbvI GCAGC 3 cut(s) 170, 173, 964
BccI CCATC 1 cut(s) 256
BciVI GTATCC 1 cut(s) 443
BclI TGATCA 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 636
BfaI CTAG 5 cut(s) 51, 281, 360, 411, 1174
BfmI CTRYAG 1 cut(s) 1116
BfuAI ACCTGC 1 cut(s) 150
BfuI GTATCC 1 cut(s) 443
BisI GCNGC 4 cut(s) 159, 162, 325, 978
BlsI GCNGC 4 cut(s) 160, 163, 326, 979
Bme18I GGWCC 1 cut(s) 758
BmgT120I GGNCC 1 cut(s) 758
BmiI GGNNCC 1 cut(s) 377
BmrI ACTGGG 1 cut(s) 610
BmsI GCATC 1 cut(s) 869
BmuI ACTGGG 1 cut(s) 610
BplI GAGNNNNNCTC 2 cut(s) 32, 64
Bpu14I TTCGAA 1 cut(s) 1092
BpuEI CTTGAG 3 cut(s) 511, 620, 645
BsaJI CCNNGG 3 cut(s) 23, 622, 1014
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 430
Bse1I ACTGG 4 cut(s) 605, 656, 813, 958
BseDI CCNNGG 3 cut(s) 23, 622, 1014
BseGI GGATG 3 cut(s) 508, 520, 610
BseLI CCNNNNNNNGG 2 cut(s) 386, 430
BseMII CTCAG 1 cut(s) 1176
BseNI ACTGG 4 cut(s) 605, 656, 813, 958
BseRI GAGGAG 1 cut(s) 53
BseSI GKGCMC 1 cut(s) 526
BseXI GCAGC 3 cut(s) 170, 173, 964
Bsh1236I CGCG 2 cut(s) 687, 763
BshFI GGCC 1 cut(s) 627
BsiHKAI GWGCWC 2 cut(s) 48, 1148
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 2 cut(s) 386, 430
BsmAI GTCTC 1 cut(s) 636
BsnI GGCC 1 cut(s) 627
Bsp119I TTCGAA 1 cut(s) 1092
Bsp1286I GDGCHC 4 cut(s) 48, 526, 900, 1148
Bsp143I GATC 6 cut(s) 16, 118, 195, 292, 402, 1102
Bsp19I CCATGG 1 cut(s) 1014
BspACI CCGC 5 cut(s) 324, 327, 687, 761, 932
BspANI GGCC 1 cut(s) 627
BspCNI CTCAG 1 cut(s) 1175
BspFNI CGCG 2 cut(s) 687, 763
BspHI TCATGA 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 377
BspMI ACCTGC 1 cut(s) 150
BspPI GGATC 2 cut(s) 410, 1110
BspT104I TTCGAA 1 cut(s) 1092
BsrI ACTGG 4 cut(s) 605, 656, 813, 958
BssECI CCNNGG 3 cut(s) 23, 622, 1014
BssMI GATC 6 cut(s) 16, 118, 195, 292, 402, 1102
BssT1I CCWWGG 1 cut(s) 1014
Bst4CI ACNGT 4 cut(s) 623, 802, 868, 1120
Bst6I CTCTTC 2 cut(s) 450, 685
BstBI TTCGAA 1 cut(s) 1092
BstC8I GCNNGC 1 cut(s) 767
BstDEI CTNAG 2 cut(s) 928, 1162
BstDSI CCRYGG 3 cut(s) 23, 622, 1014
BstF5I GGATG 3 cut(s) 508, 520, 610
BstFNI CGCG 2 cut(s) 687, 763
BstHHI GCGC 2 cut(s) 531, 765
BstKTI GATC 6 cut(s) 19, 121, 198, 295, 405, 1105
BstMAI GTCTC 1 cut(s) 636
BstMBI GATC 6 cut(s) 16, 118, 195, 292, 402, 1102
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstSFI CTRYAG 1 cut(s) 1116
BstSLI GKGCMC 1 cut(s) 526
BstUI CGCG 2 cut(s) 687, 763
BstV1I GCAGC 3 cut(s) 170, 173, 964
BstX2I RGATCY 1 cut(s) 1102
BstXI CCANNNNNNTGG 1 cut(s) 1021
BstYI RGATCY 1 cut(s) 1102
BsuI GTATCC 1 cut(s) 443
BsuRI GGCC 1 cut(s) 627
BtgI CCRYGG 3 cut(s) 23, 622, 1014
BtsCI GGATG 3 cut(s) 508, 520, 610
BtsI GCAGTG 5 cut(s) 84, 319, 524, 843, 912
BtsIMutI CAGTG 8 cut(s) 84, 319, 524, 820, 843, 912, 951, 1170
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 767
CciI TCATGA 1 cut(s) 198
CfoI GCGC 2 cut(s) 531, 765
Cfr13I GGNCC 1 cut(s) 758
CseI GACGC 1 cut(s) 220
Csp6I GTAC 2 cut(s) 439, 1087
CspCI CAANNNNNGTGG 4 cut(s) 12, 47, 380, 415
CviAII CATG 5 cut(s) 199, 296, 573, 852, 1015
CviQI GTAC 2 cut(s) 439, 1087
DdeI CTNAG 2 cut(s) 928, 1162
DpnI GATC 6 cut(s) 18, 120, 197, 294, 404, 1104
DpnII GATC 6 cut(s) 16, 118, 195, 292, 402, 1102
Eam1104I CTCTTC 2 cut(s) 450, 685
EarI CTCTTC 2 cut(s) 450, 685
Eco130I CCWWGG 1 cut(s) 1014
Eco24I GRGCYC 1 cut(s) 900
Eco47I GGWCC 1 cut(s) 758
EcoT14I CCWWGG 1 cut(s) 1014
EcoT38I GRGCYC 1 cut(s) 900
ErhI CCWWGG 1 cut(s) 1014
FaeI CATG 5 cut(s) 202, 299, 576, 855, 1018
FalI AAGNNNNNCTT 8 cut(s) 654, 686, 911, 943, 1073, 1105, 1089, 1121
FatI CATG 5 cut(s) 198, 295, 572, 851, 1014
FbaI TGATCA 1 cut(s) 195
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 4 cut(s) 159, 162, 325, 978
FokI GGATG 3 cut(s) 515, 527, 617
FriOI GRGCYC 1 cut(s) 900
Fsp4HI GCNGC 4 cut(s) 159, 162, 325, 978
FspBI CTAG 5 cut(s) 51, 281, 360, 411, 1174
GlaI GCGC 2 cut(s) 530, 764
GluI GCNGC 4 cut(s) 159, 162, 325, 978
HaeIII GGCC 1 cut(s) 627
HapII CCGG 1 cut(s) 59
HgaI GACGC 1 cut(s) 220
HhaI GCGC 2 cut(s) 531, 765
Hin1II CATG 5 cut(s) 202, 299, 576, 855, 1018
Hin6I GCGC 2 cut(s) 529, 763
HinP1I GCGC 2 cut(s) 529, 763
HincII GTYRAC 3 cut(s) 235, 301, 994
HindII GTYRAC 3 cut(s) 235, 301, 994
HindIII AAGCTT 1 cut(s) 668
HinfI GANTC 5 cut(s) 55, 205, 569, 805, 1112
HpaII CCGG 1 cut(s) 59
HphI GGTGA 4 cut(s) 73, 205, 337, 611
Hpy166II GTNNAC 4 cut(s) 235, 269, 301, 994
Hpy188I TCNGA 5 cut(s) 9, 16, 123, 568, 709
Hpy188III TCNNGA 6 cut(s) 199, 490, 539, 596, 662, 1022
Hpy8I GTNNAC 4 cut(s) 235, 269, 301, 994
HpyAV CCTTC 4 cut(s) 175, 571, 913, 1075
HpyCH4III ACNGT 4 cut(s) 623, 802, 868, 1120
HpyCH4IV ACGT 2 cut(s) 285, 1152
HpyCH4V TGCA 6 cut(s) 93, 836, 860, 905, 980, 1168
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 2 cut(s) 928, 1162
HpySE526I ACGT 2 cut(s) 285, 1152
Hsp92II CATG 5 cut(s) 202, 299, 576, 855, 1018
HspAI GCGC 2 cut(s) 529, 763
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 6 cut(s) 16, 118, 195, 292, 402, 1102
LmnI GCTCC 2 cut(s) 123, 149
Lsp1109I GCAGC 3 cut(s) 170, 173, 964
LweI GCATC 1 cut(s) 869
MaeI CTAG 5 cut(s) 51, 281, 360, 411, 1174
MaeII ACGT 2 cut(s) 285, 1152
MaeIII GTNAC 3 cut(s) 61, 589, 802
MalI GATC 6 cut(s) 18, 120, 197, 294, 404, 1104
MboI GATC 6 cut(s) 16, 118, 195, 292, 402, 1102
MflI RGATCY 1 cut(s) 1102
MhlI GDGCHC 4 cut(s) 48, 526, 900, 1148
MluCI AATT 4 cut(s) 209, 415, 534, 1046
MlyI GAGTC 1 cut(s) 799
MnlI CCTC 7 cut(s) 31, 34, 248, 505, 780, 909, 1144
MroXI GAANNNNTTC 1 cut(s) 923
MseI TTAA 4 cut(s) 243, 560, 585, 972
MslI CAYNNNNRTG 2 cut(s) 144, 1141
MspI CCGG 1 cut(s) 59
MvnI CGCG 2 cut(s) 687, 763
MwoI GCNNNNNNNGC 1 cut(s) 158
NcoI CCATGG 1 cut(s) 1014
NdeII GATC 6 cut(s) 16, 118, 195, 292, 402, 1102
NlaIII CATG 5 cut(s) 202, 299, 576, 855, 1018
NlaIV GGNNCC 1 cut(s) 377
NmuCI GTSAC 3 cut(s) 61, 589, 802
NspV TTCGAA 1 cut(s) 1092
OliI CACNNNNGTG 2 cut(s) 144, 1141
PagI TCATGA 1 cut(s) 198
PaqCI CACCTGC 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 923
PfeI GAWTC 4 cut(s) 55, 205, 569, 1112
PflMI CCANNNNNTGG 1 cut(s) 430
PkrI GCNGC 4 cut(s) 160, 163, 326, 979
PleI GAGTC 1 cut(s) 799
PpsI GAGTC 1 cut(s) 799
PsiI TTATAA 1 cut(s) 1044
PspN4I GGNNCC 1 cut(s) 377
PspPI GGNCC 1 cut(s) 758
PsuI RGATCY 1 cut(s) 1102
RsaI GTAC 2 cut(s) 440, 1088
RsaNI GTAC 2 cut(s) 439, 1087
RseI CAYNNNNRTG 2 cut(s) 144, 1141
SalI GTCGAC 1 cut(s) 299
SaqAI TTAA 4 cut(s) 243, 560, 585, 972
SatI GCNGC 4 cut(s) 159, 162, 325, 978
Sau3AI GATC 6 cut(s) 16, 118, 195, 292, 402, 1102
Sau96I GGNCC 1 cut(s) 758
SchI GAGTC 1 cut(s) 799
SduI GDGCHC 4 cut(s) 48, 526, 900, 1148
SfaNI GCATC 1 cut(s) 869
SfcI CTRYAG 1 cut(s) 1116
SfuI TTCGAA 1 cut(s) 1092
SinI GGWCC 1 cut(s) 758
SmiMI CAYNNNNRTG 2 cut(s) 144, 1141
SmlI CTYRAG 3 cut(s) 490, 635, 660
SmoI CTYRAG 3 cut(s) 490, 635, 660
Sse9I AATT 4 cut(s) 209, 415, 534, 1046
SsiI CCGC 5 cut(s) 324, 327, 687, 761, 932
SspMI CTAG 5 cut(s) 51, 281, 360, 411, 1174
StyI CCWWGG 1 cut(s) 1014
TaaI ACNGT 4 cut(s) 623, 802, 868, 1120
TaiI ACGT 2 cut(s) 288, 1155
TaqI TCGA 3 cut(s) 113, 300, 1092
TasI AATT 4 cut(s) 209, 415, 534, 1046
TauI GCSGC 1 cut(s) 327
TfiI GAWTC 4 cut(s) 55, 205, 569, 1112
Tru1I TTAA 4 cut(s) 243, 560, 585, 972
Tru9I TTAA 4 cut(s) 243, 560, 585, 972
TscAI CASTG 8 cut(s) 84, 326, 531, 820, 843, 912, 958, 1170
TseFI GTSAC 3 cut(s) 61, 589, 802
TseI GCWGC 3 cut(s) 158, 161, 977
Tsp45I GTSAC 3 cut(s) 61, 589, 802
TspDTI ATGAA 2 cut(s) 561, 956
TspRI CASTG 8 cut(s) 84, 326, 531, 820, 843, 912, 958, 1170
Van91I CCANNNNNTGG 1 cut(s) 430
VpaK11BI GGWCC 1 cut(s) 758
XapI RAATTY 2 cut(s) 415, 1046
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 923
XspI CTAG 5 cut(s) 51, 281, 360, 411, 1174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.