AT3G16590

Weak chloroplast movement under blue light

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
5649932 .. 5651056
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16590.1

Sequence Viewer

Length: 1125 bp
ATGCCGACGAAGCTTCCACTGGAGTTGGAGGATGAGATACTTTTGCGTGTTCCACCTCTATCTCTCACACGCTTTAGAACAGTTTGCAAACGATGGAACACACTTTTCAACGATCAGAGATTCATCAACAATCACTTGGCTTGCGTCCGTCCTCAGTTCATATTACGGACCGAGAAAGATTCCAAGATCTATTCAATAGGCATCAATATCGATGACTCCTTAGAGGTGCGTGAGCTAAACCTAGAAACTCAAGGTCCTAATAAGAAGCTTAAGGTATATCGAAACCTCTTTTATTGCGATGGTTTTTTGTTATGTCCTGCTTTGCTTGACGAGGTTGCTGTCTGGAATCCATGGTTGAGAAAACAAACTAAATGGATCGAGCCTAAGAGGAGTAGATTCAATTTATATGGACTAGGGTATGATAATCGTAGACCGGAGAAGTGTTACAAGATCTTAGGGTTTGGTTATGGTTACAGTAGTGAAATAAACGGTAGTTACAACAGAATTAACCCGAGAGTTTCGGTATTTGAGTTTGAAACTAATGCGTGGAAGGATCTTAAGTTTGGTTTATTTGATTGGCACCTAAGATCTCCCCGGACTGTTTTATCTTTGAATGGAACTTTGTATTGGATTGCTGTGAGGTGTGAAAGTGGTGGTGATGGTTTTATCCAAAGCTTTGACTTTTCGAGGGAGATGTTCGAGCCCTTTTGTCTCTTGCCATGTAAGAACGATTTTGGCGATACTCAAATCCTTGAGGTTTTTAGGGGAGATCGGCTATCTGTGTTGGAACAATGCCCGACAACAAATAAGATCAAGATTTGGGTGACTAAGAACAAGATTAGTGGAGATAGGAAGGAGCTTGTGTCGTGGAGACTGTTAATGACAGTGTCGATACCAAACTTCCCGAGATTACAAGATCTTTACTCTAATTCTCAGCCGAGTTACTTCATGGATAACAATGATGACAAGAGGCTCATCGTGTGTACTTGTGATGAAAGTGGTAAGCCTTGCATATACATTGTGAAGGGGGATAGGTTCAAGAAGATTCAAATGGGTTTTGAGGTTGAGCCTTGGCCTTTTCACCTTGTTTATGTTCCTAGTTTGGTTCCTATTCCTTTAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PPR_2 WEMBL

Protein Analysis

374

Amino Acids

43.87

Weight (kDa)

8.8

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 41 3.2e-08 F-box domain
FBA_1 PF07734 58 - 371 2.5e-85 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 579
AccI GTMKAC 1 cut(s) 430
AclWI GGATC 2 cut(s) 383, 561
AfaI GTAC 1 cut(s) 985
AflII CTTAAG 2 cut(s) 269, 557
AgsI TTSAA 7 cut(s) 109, 195, 400, 536, 613, 1039, 1049
AjuI GAANNNNNNNTTGG 2 cut(s) 610, 642
AluBI AGCT 5 cut(s) 13, 235, 268, 675, 859
AluI AGCT 5 cut(s) 13, 235, 268, 675, 859
Alw26I GTCTC 2 cut(s) 716, 865
AlwI GGATC 2 cut(s) 383, 561
Ama87I CYCGRG 2 cut(s) 511, 904
AoxI GGCC 1 cut(s) 1073
AspS9I GGNCC 2 cut(s) 168, 254
AsuC2I CCSGG 1 cut(s) 595
AsuHPI GGTGA 3 cut(s) 668, 835, 1073
AvaI CYCGRG 2 cut(s) 511, 904
AvaII GGWCC 2 cut(s) 168, 254
BanI GGYRCC 1 cut(s) 579
BanII GRGCYC 1 cut(s) 705
BccI CCATC 3 cut(s) 87, 293, 653
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BcnI CCSGG 1 cut(s) 595
BcoDI GTCTC 2 cut(s) 716, 865
BfaI CTAG 3 cut(s) 242, 413, 1098
BfrI CTTAAG 2 cut(s) 269, 557
BglII AGATCT 4 cut(s) 186, 450, 587, 916
Bme1390I CCNGG 1 cut(s) 595
Bme18I GGWCC 2 cut(s) 168, 254
BmeT110I CYCGRG 2 cut(s) 511, 904
BmgT120I GGNCC 2 cut(s) 168, 254
BmiI GGNNCC 2 cut(s) 581, 1107
BmrFI CCNGG 1 cut(s) 595
BmsI GCATC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 2 cut(s) 234, 773
BpuMI CCSGG 1 cut(s) 595
Bsa29I ATCGAT 1 cut(s) 210
BsaJI CCNNGG 3 cut(s) 350, 593, 1070
BsaWI WCCGGW 1 cut(s) 433
BsaXI ACNNNNNCTCC 2 cut(s) 848, 878
Bse1I ACTGG 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 350, 593, 1070
BseGI GGATG 1 cut(s) 37
BseMII CTCAG 2 cut(s) 167, 947
BseNI ACTGG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 403
BshFI GGCC 1 cut(s) 1075
BshNI GGYRCC 1 cut(s) 579
BshVI ATCGAT 1 cut(s) 210
BsiHKCI CYCGRG 2 cut(s) 511, 904
BsiSI CCGG 2 cut(s) 434, 595
BsmAI GTCTC 2 cut(s) 716, 865
BsnI GGCC 1 cut(s) 1075
BsoBI CYCGRG 2 cut(s) 511, 904
Bsp1286I GDGCHC 1 cut(s) 705
Bsp143I GATC 9 cut(s) 112, 186, 375, 450, 553, 587, 769, 810, 916
Bsp19I CCATGG 1 cut(s) 350
BspANI GGCC 1 cut(s) 1075
BspCNI CTCAG 2 cut(s) 166, 946
BspDI ATCGAT 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 581, 1107
BspPI GGATC 2 cut(s) 383, 561
BspT107I GGYRCC 1 cut(s) 579
BspTI CTTAAG 2 cut(s) 269, 557
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 3 cut(s) 350, 593, 1070
BssMI GATC 9 cut(s) 112, 186, 375, 450, 553, 587, 769, 810, 916
BssT1I CCWWGG 2 cut(s) 350, 1070
Bst4CI ACNGT 6 cut(s) 82, 476, 491, 601, 876, 886
BstAFI CTTAAG 2 cut(s) 269, 557
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 7 cut(s) 153, 220, 384, 454, 584, 828, 933
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 9 cut(s) 115, 189, 378, 453, 556, 590, 772, 813, 919
BstMAI GTCTC 2 cut(s) 716, 865
BstMBI GATC 9 cut(s) 112, 186, 375, 450, 553, 587, 769, 810, 916
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 593
BstX2I RGATCY 5 cut(s) 186, 450, 553, 587, 916
BstYI RGATCY 5 cut(s) 186, 450, 553, 587, 916
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 1 cut(s) 1075
BsuTUI ATCGAT 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 350
BtgZI GCGATG 1 cut(s) 312
BtsCI GGATG 1 cut(s) 37
BtsIMutI CAGTG 2 cut(s) 17, 891
Cac8I GCNNGC 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 168, 254
ClaI ATCGAT 1 cut(s) 210
CpoI CGGWCCG 1 cut(s) 168
CseI GACGC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 984
CspCI CAANNNNNGTGG 4 cut(s) 6, 41, 823, 858
CspI CGGWCCG 1 cut(s) 168
CviAII CATG 3 cut(s) 351, 720, 949
CviQI GTAC 1 cut(s) 984
DdeI CTNAG 7 cut(s) 153, 220, 384, 454, 584, 828, 933
DpnI GATC 9 cut(s) 114, 188, 377, 452, 555, 589, 771, 812, 918
DpnII GATC 9 cut(s) 112, 186, 375, 450, 553, 587, 769, 810, 916
Eco130I CCWWGG 2 cut(s) 350, 1070
Eco24I GRGCYC 1 cut(s) 705
Eco47I GGWCC 2 cut(s) 168, 254
Eco88I CYCGRG 2 cut(s) 511, 904
EcoO109I RGGNCCY 1 cut(s) 254
EcoT14I CCWWGG 2 cut(s) 350, 1070
EcoT38I GRGCYC 1 cut(s) 705
ErhI CCWWGG 2 cut(s) 350, 1070
FaeI CATG 3 cut(s) 354, 723, 952
FatI CATG 3 cut(s) 350, 719, 948
FblI GTMKAC 1 cut(s) 430
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 1 cut(s) 705
FspBI CTAG 3 cut(s) 242, 413, 1098
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 1 cut(s) 1075
HapII CCGG 2 cut(s) 434, 595
HgaI GACGC 1 cut(s) 133
Hin1II CATG 3 cut(s) 354, 723, 952
HindIII AAGCTT 3 cut(s) 11, 266, 673
HinfI GANTC 6 cut(s) 120, 179, 215, 346, 396, 1045
HpaII CCGG 2 cut(s) 434, 595
HphI GGTGA 3 cut(s) 668, 835, 1073
Hpy166II GTNNAC 2 cut(s) 431, 984
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 4 cut(s) 343, 814, 904, 1039
Hpy8I GTNNAC 2 cut(s) 431, 984
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 544, 847, 1018
HpyCH4III ACNGT 6 cut(s) 82, 476, 491, 601, 876, 886
HpyCH4V TGCA 2 cut(s) 87, 1011
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 7 cut(s) 153, 220, 384, 454, 584, 828, 933
Hsp92II CATG 3 cut(s) 354, 723, 952
Kzo9I GATC 9 cut(s) 112, 186, 375, 450, 553, 587, 769, 810, 916
LmnI GCTCC 1 cut(s) 856
LpnPI CCDG 5 cut(s) 5, 328, 330, 447, 608
LweI GCATC 1 cut(s) 210
MaeI CTAG 3 cut(s) 242, 413, 1098
MaeIII GTNAC 5 cut(s) 443, 470, 494, 823, 941
MalI GATC 9 cut(s) 114, 188, 377, 452, 555, 589, 771, 812, 918
MboI GATC 9 cut(s) 112, 186, 375, 450, 553, 587, 769, 810, 916
MboII GAAGA 1 cut(s) 1054
MflI RGATCY 5 cut(s) 186, 450, 553, 587, 916
MhlI GDGCHC 1 cut(s) 705
MluCI AATT 3 cut(s) 400, 504, 928
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 2 cut(s) 6, 765
MseI TTAA 4 cut(s) 270, 507, 558, 878
MspCI CTTAAG 2 cut(s) 269, 557
MspI CCGG 2 cut(s) 434, 595
MspR9I CCNGG 1 cut(s) 595
MwoI GCNNNNNNNGC 1 cut(s) 10
NciI CCSGG 1 cut(s) 595
NcoI CCATGG 1 cut(s) 350
NdeII GATC 9 cut(s) 112, 186, 375, 450, 553, 587, 769, 810, 916
NlaIII CATG 3 cut(s) 354, 723, 952
NlaIV GGNNCC 2 cut(s) 581, 1107
NmeAIII GCCGAG 1 cut(s) 963
NmuCI GTSAC 1 cut(s) 823
PcsI WCGNNNNNNNCGW 1 cut(s) 735
PfeI GAWTC 5 cut(s) 120, 179, 346, 396, 1045
PflFI GACNNNGTC 1 cut(s) 886
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PpuMI RGGWCCY 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 581, 1107
PspPI GGNCC 2 cut(s) 168, 254
PspPPI RGGWCCY 1 cut(s) 254
PsuI RGATCY 5 cut(s) 186, 450, 553, 587, 916
PsyI GACNNNGTC 1 cut(s) 886
RsaI GTAC 1 cut(s) 985
RsaNI GTAC 1 cut(s) 984
Rsr2I CGGWCCG 1 cut(s) 168
RsrII CGGWCCG 1 cut(s) 168
SaqAI TTAA 4 cut(s) 270, 507, 558, 878
Sau3AI GATC 9 cut(s) 112, 186, 375, 450, 553, 587, 769, 810, 916
Sau96I GGNCC 2 cut(s) 168, 254
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 595
SduI GDGCHC 1 cut(s) 705
SfaNI GCATC 1 cut(s) 210
SinI GGWCC 2 cut(s) 168, 254
SmlI CTYRAG 4 cut(s) 249, 269, 557, 752
SmoI CTYRAG 4 cut(s) 249, 269, 557, 752
Sse9I AATT 3 cut(s) 400, 504, 928
SspMI CTAG 3 cut(s) 242, 413, 1098
StyD4I CCNGG 1 cut(s) 593
StyI CCWWGG 2 cut(s) 350, 1070
TaaI ACNGT 6 cut(s) 82, 476, 491, 601, 876, 886
TaqI TCGA 6 cut(s) 210, 280, 378, 686, 699, 890
TaqII GACCGA 1 cut(s) 185
TasI AATT 3 cut(s) 400, 504, 928
TatI WGTACW 1 cut(s) 983
TfiI GAWTC 5 cut(s) 120, 179, 346, 396, 1045
Tru1I TTAA 4 cut(s) 270, 507, 558, 878
Tru9I TTAA 4 cut(s) 270, 507, 558, 878
TscAI CASTG 2 cut(s) 24, 891
TseFI GTSAC 1 cut(s) 823
Tsp45I GTSAC 1 cut(s) 823
TspDTI ATGAA 4 cut(s) 112, 148, 937, 1008
TspGWI ACGGA 2 cut(s) 137, 181
TspRI CASTG 2 cut(s) 24, 891
Tth111I GACNNNGTC 1 cut(s) 886
Vha464I CTTAAG 2 cut(s) 269, 557
VpaK11BI GGWCC 2 cut(s) 168, 254
XmiI GTMKAC 1 cut(s) 430
XspI CTAG 3 cut(s) 242, 413, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.