AT1G59680

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Forward (+)
21933012 .. 21934216
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G59680.1

Sequence Viewer

Length: 795 bp
ATGTCAGATCTTTCTGTGGATTTGGTAGGGGAGATACTCTCTAGGGTTCCGCTAACATCTCTGAGCGCAGTGCGATGTACTTGCAAATCGTGGAACACTTTATCTAAGCATCAGATTTTTGGTAAAGCAGAATTAGCAGCGACTAAGCAGTTTTTGGGGTTCACTGTGATGGATTATAAGGTTTGTTCCTTGAGATTCGATCTCCAAGGAATCCGCAACGACGGTGATGACTTTGTTGATCACGGTAAATCCGGTTTAAAAATAAGGAATAAAGCGCATGTCCACAATACTCAGAAATCTATGATTTTAACTCCAGTTCATGGAGGCTGGTTGAGATCAATCCCGTCTGCAGAAAGATTTGGACCGCATCTTCCTCTGCCGGTTCACTCTTATGATGACGTGACTCTATCTTGTGTCAGACAAGAGCAGCTTGCTTTGTTATATGGGAACAACGAGACAGATGATTCATTAGAGATTTGGATTACAAATCAGATTGATCCCAATGCAGTGTCGTGGAGCATATTTTTGAAAGTGGATATCAAACCGCTTATTGGTTTTCCAAAAGACTTCGATCCTGGGAGCTTCTTCATTGACGAAGAGAAGAAAGTCGTTGTGGTTTACGATTTGGACGGACATTTATATAGTACCAAGAAGAACTGTGCCTACCAAAGGCTTTACATCATTGGAGAAGATGGATACTTCACATCTGTAAAAATCAAATGCTCTGACTCACCTGAATTCTCTGCTTATGCTCCAAGTTTAGTGACATACAAACCAACCAACTACGCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

264

Amino Acids

29.69

Weight (kDa)

6.44

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 41 4.6e-08 F-box domain
FBA_1 PF07734 116 - 256 2.1e-36 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AccB7I CCANNNNNTGG 1 cut(s) 320
AciI CCGC 4 cut(s) 50, 214, 365, 545
AclWI GGATC 2 cut(s) 491, 566
AcsI RAATTY 1 cut(s) 737
AfaI GTAC 2 cut(s) 79, 646
AfiI CCNNNNNNNGG 3 cut(s) 320, 551, 669
AgsI TTSAA 1 cut(s) 529
AjiI CACGTC 1 cut(s) 400
AjnI CCWGG 1 cut(s) 574
AluBI AGCT 2 cut(s) 430, 582
AluI AGCT 2 cut(s) 430, 582
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 2 cut(s) 491, 566
ApeKI GCWGC 2 cut(s) 137, 427
ApoI RAATTY 1 cut(s) 737
AspLEI GCGC 2 cut(s) 68, 277
AspS9I GGNCC 1 cut(s) 362
AsuHPI GGTGA 2 cut(s) 236, 723
AvaII GGWCC 1 cut(s) 362
BbvI GCAGC 2 cut(s) 149, 439
BccI CCATC 2 cut(s) 163, 686
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 1 cut(s) 576
BciVI GTATCC 1 cut(s) 689
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 348
BfuI GTATCC 1 cut(s) 689
BglII AGATCT 1 cut(s) 7
BisI GCNGC 2 cut(s) 138, 428
BlsI GCNGC 2 cut(s) 139, 429
Bme1390I CCNGG 1 cut(s) 576
Bme18I GGWCC 1 cut(s) 362
BmgBI CACGTC 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 576
BmsI GCATC 2 cut(s) 118, 376
BplI GAGNNNNNCTC 2 cut(s) 23, 55
BpmI CTGGAG 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 211
BsaJI CCNNGG 2 cut(s) 205, 575
BsaWI WCCGGW 1 cut(s) 251
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 551, 669
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 314
BseBI CCWGG 1 cut(s) 576
BseDI CCNNGG 2 cut(s) 205, 575
BseLI CCNNNNNNNGG 3 cut(s) 320, 551, 669
BseMII CTCAG 2 cut(s) 53, 305
BseNI ACTGG 1 cut(s) 314
BseXI GCAGC 2 cut(s) 149, 439
BsiSI CCGG 2 cut(s) 252, 380
BslI CCNNNNNNNGG 3 cut(s) 320, 551, 669
BsmAI GTCTC 1 cut(s) 449
Bsp143I GATC 6 cut(s) 7, 199, 238, 335, 496, 571
BspACI CCGC 4 cut(s) 50, 214, 365, 545
BspCNI CTCAG 2 cut(s) 54, 304
BspLI GGNNCC 1 cut(s) 48
BspMAI CTGCAG 1 cut(s) 352
BspPI GGATC 2 cut(s) 491, 566
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 1 cut(s) 314
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 2 cut(s) 205, 575
BssMI GATC 6 cut(s) 7, 199, 238, 335, 496, 571
BssT1I CCWWGG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 576
Bst4CI ACNGT 4 cut(s) 166, 224, 245, 659
Bst6I CTCTTC 1 cut(s) 591
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 4 cut(s) 62, 105, 144, 291
BstENI CCTNNNNNAGG 1 cut(s) 667
BstHHI GCGC 2 cut(s) 68, 277
BstKTI GATC 6 cut(s) 10, 202, 241, 338, 499, 574
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 6 cut(s) 7, 199, 238, 335, 496, 571
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 576
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 574
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 2 cut(s) 149, 439
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuI GTATCC 1 cut(s) 689
BtgZI GCGATG 1 cut(s) 88
BtrI CACGTC 1 cut(s) 400
BtsI GCAGTG 2 cut(s) 75, 513
BtsIMutI CAGTG 3 cut(s) 75, 162, 513
Cac8I GCNNGC 1 cut(s) 432
CfoI GCGC 2 cut(s) 68, 277
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 362
Csp6I GTAC 2 cut(s) 78, 645
CviAII CATG 2 cut(s) 278, 320
CviJI RGCY 4 cut(s) 327, 430, 582, 673
CviKI_1 RGCY 4 cut(s) 327, 430, 582, 673
CviQI GTAC 2 cut(s) 78, 645
DdeI CTNAG 4 cut(s) 62, 105, 144, 291
DpnI GATC 6 cut(s) 9, 201, 240, 337, 498, 573
DpnII GATC 6 cut(s) 7, 199, 238, 335, 496, 571
DraI TTTAAA 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
Eco130I CCWWGG 1 cut(s) 205
Eco32I GATATC 1 cut(s) 538
Eco47I GGWCC 1 cut(s) 362
EcoNI CCTNNNNNAGG 1 cut(s) 667
EcoRI GAATTC 1 cut(s) 737
EcoRII CCWGG 1 cut(s) 574
EcoRV GATATC 1 cut(s) 538
EcoT14I CCWWGG 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 205
FaeI CATG 2 cut(s) 281, 323
FalI AAGNNNNNCTT 2 cut(s) 414, 446
FatI CATG 2 cut(s) 277, 319
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 138, 428
Fsp4HI GCNGC 2 cut(s) 138, 428
FspBI CTAG 1 cut(s) 42
GlaI GCGC 2 cut(s) 67, 276
GluI GCNGC 2 cut(s) 138, 428
GsuI CTGGAG 1 cut(s) 297
HapII CCGG 2 cut(s) 252, 380
HhaI GCGC 2 cut(s) 68, 277
Hin1II CATG 2 cut(s) 281, 323
Hin6I GCGC 2 cut(s) 66, 275
HinP1I GCGC 2 cut(s) 66, 275
HinfI GANTC 5 cut(s) 195, 210, 403, 464, 728
HpaII CCGG 2 cut(s) 252, 380
HphI GGTGA 2 cut(s) 236, 723
Hpy166II GTNNAC 4 cut(s) 162, 283, 385, 619
Hpy188I TCNGA 7 cut(s) 7, 63, 114, 294, 419, 492, 727
Hpy8I GTNNAC 4 cut(s) 162, 283, 385, 619
Hpy99I CGWCG 1 cut(s) 224
HpyCH4III ACNGT 4 cut(s) 166, 224, 245, 659
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 3 cut(s) 84, 350, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 4 cut(s) 62, 105, 144, 291
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 2 cut(s) 281, 323
HspAI GCGC 2 cut(s) 66, 275
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 6 cut(s) 7, 199, 238, 335, 496, 571
LmnI GCTCC 3 cut(s) 516, 579, 757
LpnPI CCDG 7 cut(s) 265, 313, 327, 393, 561, 588, 747
Lsp1109I GCAGC 2 cut(s) 149, 439
LweI GCATC 2 cut(s) 118, 376
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 2 cut(s) 400, 763
MalI GATC 6 cut(s) 9, 201, 240, 337, 498, 573
MboI GATC 6 cut(s) 7, 199, 238, 335, 496, 571
MboII GAAGA 6 cut(s) 362, 577, 608, 613, 664, 701
MflI RGATCY 1 cut(s) 7
MluCI AATT 2 cut(s) 131, 737
MlyI GAGTC 2 cut(s) 397, 722
MnlI CCTC 2 cut(s) 317, 384
MseI TTAA 2 cut(s) 257, 308
MslI CAYNNNNRTG 2 cut(s) 167, 390
MspI CCGG 2 cut(s) 252, 380
MspR9I CCNGG 1 cut(s) 576
MvaI CCWGG 1 cut(s) 576
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 6 cut(s) 7, 199, 238, 335, 496, 571
NlaIII CATG 2 cut(s) 281, 323
NlaIV GGNNCC 1 cut(s) 48
NmuCI GTSAC 2 cut(s) 400, 763
NspI RCATGY 1 cut(s) 281
PfeI GAWTC 3 cut(s) 195, 210, 464
PflMI CCANNNNNTGG 1 cut(s) 320
PkrI GCNGC 2 cut(s) 139, 429
PleI GAGTC 2 cut(s) 397, 722
PpsI GAGTC 2 cut(s) 397, 722
PsiI TTATAA 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 574
PspGI CCWGG 1 cut(s) 574
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 362
PsrI GAACNNNNNNTAC 2 cut(s) 647, 679
PstI CTGCAG 1 cut(s) 352
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 2 cut(s) 79, 646
RsaNI GTAC 2 cut(s) 78, 645
RseI CAYNNNNRTG 2 cut(s) 167, 390
SaqAI TTAA 2 cut(s) 257, 308
SatI GCNGC 2 cut(s) 138, 428
Sau3AI GATC 6 cut(s) 7, 199, 238, 335, 496, 571
Sau96I GGNCC 1 cut(s) 362
SchI GAGTC 2 cut(s) 397, 722
ScrFI CCNGG 1 cut(s) 576
SetI ASST 5 cut(s) 183, 402, 432, 584, 736
SfaNI GCATC 2 cut(s) 118, 376
SfcI CTRYAG 1 cut(s) 348
SinI GGWCC 1 cut(s) 362
SmiMI CAYNNNNRTG 2 cut(s) 167, 390
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 2 cut(s) 131, 737
SsiI CCGC 4 cut(s) 50, 214, 365, 545
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 574
StyI CCWWGG 1 cut(s) 205
TaaI ACNGT 4 cut(s) 166, 224, 245, 659
TaiI ACGT 1 cut(s) 402
TaqI TCGA 2 cut(s) 198, 570
TasI AATT 2 cut(s) 131, 737
TatI WGTACW 1 cut(s) 77
TfiI GAWTC 3 cut(s) 195, 210, 464
Tru1I TTAA 2 cut(s) 257, 308
Tru9I TTAA 2 cut(s) 257, 308
TscAI CASTG 3 cut(s) 75, 169, 513
TseFI GTSAC 2 cut(s) 400, 763
TseI GCWGC 2 cut(s) 137, 427
Tsp45I GTSAC 2 cut(s) 400, 763
TspDTI ATGAA 3 cut(s) 308, 456, 577
TspGWI ACGGA 1 cut(s) 645
TspRI CASTG 3 cut(s) 75, 169, 513
Van91I CCANNNNNTGG 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 362
XagI CCTNNNNNAGG 1 cut(s) 667
XapI RAATTY 1 cut(s) 737
XceI RCATGY 1 cut(s) 281
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.