AT1G31510

polyadenylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Forward (+)
11277417 .. 11278462
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31510.1

Sequence Viewer

Length: 930 bp
ATGTCTCACATGCATGGTCTTGAACCGATATTCACAGTCTTCAATTACGTTCCGGCCACAGTTTCTCCATTGTGCTCAACAATTTCTTGTATCGGTATGGATTTCAACAACAAACCTAGTTTAAATTTTCAGGTTTTTAAACCGCTTTCATCTTCGGATTTATTGGAGCACAACATGTTTCATTGTGATGGTCTATTGCTAATGGTCATGGGAACCAAAATTTTAGTTTCCAATCCGTTGTTGAAAGAAGCAAGATGGATCAAATGTGGCTATAGCTTTGAGTTTGACCATTCCATCGATGCATATGGTCTTGGATACATTAGTAACGAGTCACCAAGTGGTTGTAATGATTACAAAATGGTTAGGTTTCGGTGTCCTAATAATTTAAGTGTTGAAATCTACGATTTCAAATCTGATTGTTGGAAGGTTGTTGTTGTTGATAAAACCTTCCATGGGTTCTTTCGACTACCATTGTCAAGTGTGTGTATAGGAGGAACTCCTTATTGGATAGGTTATAATATCTACGGTACCGTTTCGATACAAAGTTTCGATTTCTCAAAAGAGAGATTTGAGACCTTGTTCGAGTCTCTTCATCACTCATCCATCGGGATCCAGTGGAAAGATTCTCTTTCTTTAGGGATTTTCCGTGGAGATCATCTTTCTTTGTTACGTGAACCGCACTTAGCAGTTTCTATAGCTCAACTTCCCAAGTTTCCAATATATCCAAGTCACTTCATTGAGAACAATGAATGCCCGAAAGTTGAATGTTACTCTTCTATGGAGTCTTCAATTGGTGGTCCTGGTTGCTACTATATATGTCCCAAGCTTACTTCCGGTTCCAGGCTTTTCGAGGTAATTAAGAGGAAGAAGAATAAGCGTGCTCCGATCCATTGCTACGAGTTAAATGGTTATCTTCTTTCATGTTTATAA

Protein Analysis

309

Amino Acids

35.08

Weight (kDa)

7.14

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 31 - 227 1.9e-38 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 516, 928
Acc65I GGTACC 1 cut(s) 527
AccB1I GGYRCC 1 cut(s) 527
AciI CCGC 2 cut(s) 143, 677
AclWI GGATC 4 cut(s) 266, 604, 617, 880
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 124, 219
AdeI CACNNNGTG 1 cut(s) 338
AfaI GTAC 1 cut(s) 529
AfiI CCNNNNNNNGG 2 cut(s) 453, 840
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 8 cut(s) 23, 43, 106, 244, 395, 409, 764, 789
AjnI CCWGG 2 cut(s) 799, 839
AjuI GAANNNNNNNTTGG 2 cut(s) 487, 519
AluBI AGCT 3 cut(s) 276, 698, 826
AluI AGCT 3 cut(s) 276, 698, 826
Alw21I GWGCWC 3 cut(s) 77, 171, 883
Alw26I GTCTC 3 cut(s) 9, 566, 591
AlwI GGATC 4 cut(s) 266, 604, 617, 880
AoxI GGCC 1 cut(s) 54
ApoI RAATTY 2 cut(s) 124, 219
Asp718I GGTACC 1 cut(s) 527
AspS9I GGNCC 1 cut(s) 797
AsuHPI GGTGA 1 cut(s) 324
AvaII GGWCC 1 cut(s) 797
BaeI ACNNNNGTAYC 2 cut(s) 307, 340
BamHI GGATCC 1 cut(s) 609
BanI GGYRCC 1 cut(s) 527
BbsI GAAGAC 2 cut(s) 31, 777
Bbv12I GWGCWC 3 cut(s) 77, 171, 883
BccI CCATC 4 cut(s) 182, 249, 302, 611
BciT130I CCWGG 2 cut(s) 801, 841
BciVI GTATCC 1 cut(s) 308
BcoDI GTCTC 3 cut(s) 9, 566, 591
BfaI CTAG 1 cut(s) 117
BfmI CTRYAG 2 cut(s) 271, 693
BfuI GTATCC 1 cut(s) 308
Bme1390I CCNGG 2 cut(s) 801, 841
Bme18I GGWCC 1 cut(s) 797
BmgT120I GGNCC 1 cut(s) 797
BmiI GGNNCC 4 cut(s) 214, 529, 611, 838
BmrFI CCNGG 2 cut(s) 801, 841
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 2 cut(s) 31, 777
Bsa29I ATCGAT 1 cut(s) 297
BsaAI YACGTR 1 cut(s) 671
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 2 cut(s) 451, 646
BsaWI WCCGGW 1 cut(s) 833
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 2 cut(s) 453, 840
Bse1I ACTGG 1 cut(s) 613
Bse3DI GCAATG 1 cut(s) 889
BseBI CCWGG 2 cut(s) 801, 841
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 451, 646
BseGI GGATG 1 cut(s) 599
BseLI CCNNNNNNNGG 2 cut(s) 453, 840
BseMI GCAATG 1 cut(s) 889
BseNI ACTGG 1 cut(s) 613
BshFI GGCC 1 cut(s) 56
BshNI GGYRCC 1 cut(s) 527
BshVI ATCGAT 1 cut(s) 297
BsiHKAI GWGCWC 3 cut(s) 77, 171, 883
BsiSI CCGG 2 cut(s) 53, 834
BslFI GGGAC 1 cut(s) 804
BslI CCNNNNNNNGG 2 cut(s) 453, 840
BsmAI GTCTC 3 cut(s) 9, 566, 591
BsmFI GGGAC 1 cut(s) 804
BsmI GAATGC 1 cut(s) 755
BsnI GGCC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 566
Bsp1286I GDGCHC 3 cut(s) 77, 171, 883
Bsp143I GATC 4 cut(s) 258, 609, 652, 885
Bsp19I CCATGG 1 cut(s) 451
BspACI CCGC 2 cut(s) 143, 677
BspANI GGCC 1 cut(s) 56
BspDI ATCGAT 1 cut(s) 297
BspLI GGNNCC 4 cut(s) 214, 529, 611, 838
BspPI GGATC 4 cut(s) 266, 604, 617, 880
BspT107I GGYRCC 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 889
BsrI ACTGG 1 cut(s) 613
BssECI CCNNGG 2 cut(s) 451, 646
BssMI GATC 4 cut(s) 258, 609, 652, 885
BssT1I CCWWGG 1 cut(s) 451
Bst2UI CCWGG 2 cut(s) 801, 841
Bst4CI ACNGT 4 cut(s) 37, 61, 527, 532
Bst6I CTCTTC 2 cut(s) 594, 778
BstBAI YACGTR 1 cut(s) 671
BstC8I GCNNGC 1 cut(s) 879
BstDEI CTNAG 1 cut(s) 682
BstDSI CCRYGG 2 cut(s) 451, 646
BstF5I GGATG 1 cut(s) 599
BstKTI GATC 4 cut(s) 261, 612, 655, 888
BstMAI GTCTC 3 cut(s) 9, 566, 591
BstMBI GATC 4 cut(s) 258, 609, 652, 885
BstNI CCWGG 2 cut(s) 801, 841
BstNSI RCATGY 2 cut(s) 13, 178
BstSCI CCNGG 2 cut(s) 799, 839
BstSFI CTRYAG 2 cut(s) 271, 693
BstV2I GAAGAC 2 cut(s) 31, 777
BstX2I RGATCY 1 cut(s) 609
BstYI RGATCY 1 cut(s) 609
Bsu15I ATCGAT 1 cut(s) 297
BsuI GTATCC 1 cut(s) 308
BsuRI GGCC 1 cut(s) 56
BsuTUI ATCGAT 1 cut(s) 297
BtgI CCRYGG 2 cut(s) 451, 646
BtsCI GGATG 1 cut(s) 599
BtsIMutI CAGTG 1 cut(s) 620
Cac8I GCNNGC 1 cut(s) 879
Cfr13I GGNCC 1 cut(s) 797
ClaI ATCGAT 1 cut(s) 297
Csp6I GTAC 1 cut(s) 528
CviAII CATG 6 cut(s) 10, 14, 175, 208, 452, 921
CviJI RGCY 6 cut(s) 56, 270, 276, 698, 826, 844
CviKI_1 RGCY 6 cut(s) 56, 270, 276, 698, 826, 844
CviQI GTAC 1 cut(s) 528
DdeI CTNAG 1 cut(s) 682
DpnI GATC 4 cut(s) 260, 611, 654, 887
DpnII GATC 4 cut(s) 258, 609, 652, 885
DraI TTTAAA 2 cut(s) 123, 139
DraIII CACNNNGTG 1 cut(s) 338
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 2 cut(s) 594, 778
EarI CTCTTC 2 cut(s) 594, 778
Eco130I CCWWGG 1 cut(s) 451
Eco31I GGTCTC 1 cut(s) 566
Eco47I GGWCC 1 cut(s) 797
EcoRII CCWGG 2 cut(s) 799, 839
EcoT14I CCWWGG 1 cut(s) 451
EcoT22I ATGCAT 2 cut(s) 15, 304
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 6 cut(s) 13, 17, 178, 211, 455, 924
FalI AAGNNNNNCTT 2 cut(s) 612, 644
FaqI GGGAC 1 cut(s) 804
FatI CATG 6 cut(s) 9, 13, 174, 207, 451, 920
FauNDI CATATG 1 cut(s) 304
FokI GGATG 1 cut(s) 586
FspBI CTAG 1 cut(s) 117
HaeIII GGCC 1 cut(s) 56
HapII CCGG 2 cut(s) 53, 834
Hin1II CATG 6 cut(s) 13, 17, 178, 211, 455, 924
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 4 cut(s) 329, 584, 623, 782
HpaII CCGG 2 cut(s) 53, 834
HphI GGTGA 1 cut(s) 324
Hpy166II GTNNAC 1 cut(s) 674
Hpy188I TCNGA 3 cut(s) 157, 415, 885
Hpy188III TCNNGA 2 cut(s) 20, 607
Hpy8I GTNNAC 1 cut(s) 674
HpyAV CCTTC 2 cut(s) 418, 457
HpyCH4III ACNGT 4 cut(s) 37, 61, 527, 532
HpyCH4IV ACGT 2 cut(s) 48, 670
HpyCH4V TGCA 2 cut(s) 13, 302
HpyF3I CTNAG 1 cut(s) 682
HpySE526I ACGT 2 cut(s) 48, 670
Hsp92II CATG 6 cut(s) 13, 17, 178, 211, 455, 924
KpnI GGTACC 1 cut(s) 531
Kzo9I GATC 4 cut(s) 258, 609, 652, 885
LmnI GCTCC 2 cut(s) 166, 886
LpnPI CCDG 8 cut(s) 66, 116, 626, 786, 813, 826, 847, 853
LweI GCATC 1 cut(s) 289
MaeI CTAG 1 cut(s) 117
MaeII ACGT 2 cut(s) 48, 670
MaeIII GTNAC 5 cut(s) 323, 330, 666, 728, 767
MalI GATC 4 cut(s) 260, 611, 654, 887
MboI GATC 4 cut(s) 258, 609, 652, 885
MboII GAAGA 8 cut(s) 31, 144, 581, 765, 777, 877, 880, 905
MfeI CAATTG 1 cut(s) 789
MflI RGATCY 1 cut(s) 609
MhlI GDGCHC 3 cut(s) 77, 171, 883
MluCI AATT 7 cut(s) 43, 81, 124, 219, 382, 789, 855
MlyI GAGTC 3 cut(s) 338, 593, 791
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 3 cut(s) 485, 844, 855
Mph1103I ATGCAT 2 cut(s) 15, 304
MseI TTAA 5 cut(s) 122, 138, 386, 858, 902
MslI CAYNNNNRTG 2 cut(s) 12, 186
MspI CCGG 2 cut(s) 53, 834
MspR9I CCNGG 2 cut(s) 801, 841
MunI CAATTG 1 cut(s) 789
Mva1269I GAATGC 1 cut(s) 755
MvaI CCWGG 2 cut(s) 801, 841
NcoI CCATGG 1 cut(s) 451
NdeI CATATG 1 cut(s) 304
NdeII GATC 4 cut(s) 258, 609, 652, 885
NlaIII CATG 6 cut(s) 13, 17, 178, 211, 455, 924
NlaIV GGNNCC 4 cut(s) 214, 529, 611, 838
NmuCI GTSAC 2 cut(s) 330, 728
NsiI ATGCAT 2 cut(s) 15, 304
NspI RCATGY 2 cut(s) 13, 178
PciI ACATGT 1 cut(s) 174
PctI GAATGC 1 cut(s) 755
PfeI GAWTC 1 cut(s) 623
PleI GAGTC 3 cut(s) 337, 592, 790
PpsI GAGTC 3 cut(s) 337, 592, 790
Ppu21I YACGTR 1 cut(s) 671
PscI ACATGT 1 cut(s) 174
PsiI TTATAA 2 cut(s) 516, 928
Psp6I CCWGG 2 cut(s) 799, 839
PspGI CCWGG 2 cut(s) 799, 839
PspN4I GGNNCC 4 cut(s) 214, 529, 611, 838
PspPI GGNCC 1 cut(s) 797
PsuI RGATCY 1 cut(s) 609
RsaI GTAC 1 cut(s) 529
RsaNI GTAC 1 cut(s) 528
RseI CAYNNNNRTG 2 cut(s) 12, 186
SaqAI TTAA 5 cut(s) 122, 138, 386, 858, 902
Sau3AI GATC 4 cut(s) 258, 609, 652, 885
Sau96I GGNCC 1 cut(s) 797
SchI GAGTC 3 cut(s) 338, 593, 791
ScrFI CCNGG 2 cut(s) 801, 841
SduI GDGCHC 3 cut(s) 77, 171, 883
SfaNI GCATC 1 cut(s) 289
SfcI CTRYAG 2 cut(s) 271, 693
SinI GGWCC 1 cut(s) 797
SmiMI CAYNNNNRTG 2 cut(s) 12, 186
Sse9I AATT 7 cut(s) 43, 81, 124, 219, 382, 789, 855
SsiI CCGC 2 cut(s) 143, 677
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 799, 839
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 4 cut(s) 37, 61, 527, 532
TaiI ACGT 2 cut(s) 51, 673
TaqI TCGA 6 cut(s) 297, 463, 536, 549, 582, 849
TasI AATT 7 cut(s) 43, 81, 124, 219, 382, 789, 855
TfiI GAWTC 1 cut(s) 623
Tru1I TTAA 5 cut(s) 122, 138, 386, 858, 902
Tru9I TTAA 5 cut(s) 122, 138, 386, 858, 902
TscAI CASTG 1 cut(s) 620
TseFI GTSAC 2 cut(s) 330, 728
Tsp45I GTSAC 2 cut(s) 330, 728
TspDTI ATGAA 6 cut(s) 138, 170, 581, 724, 762, 909
TspGWI ACGGA 2 cut(s) 225, 635
TspRI CASTG 1 cut(s) 620
VpaK11BI GGWCC 1 cut(s) 797
XapI RAATTY 2 cut(s) 124, 219
XceI RCATGY 2 cut(s) 13, 178
XspI CTAG 1 cut(s) 117
Zsp2I ATGCAT 2 cut(s) 15, 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.