AT4G10190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000186
Physical Location & Seq
Forward (+)
6350928 .. 6352031
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G10190.1

Sequence Viewer

Length: 1104 bp
ATGACGAAGAGAAACATAGTAGATCTTCCCGAGGATTTGGTAATGGAGATACTCGCGAGGGTTCCGACCGTAACTTTGGTCCGATTACAATCTACATCCAAAAGATGGAACGTTCTGATCGAAGATAAGAGATTTGCTGAGCAGCACTTTACTAATGCACCAAGGCACTCTCTGCTTATCATGTTGATGACCTTTAGGGTTTATCTCGTGAGCGTCGATCTTCATACAATTCACAACAACAAGGTAAACATAATAAGTCAACTTCGCCTGAAAGATCCTCTTTCAAATTTTTTAGAAGAAGTTGATATATGCAACGTCTTTCATTGCGACGGCTTCTTGCTATGCACCACCGTAGACAATAGACTCGTTGTTTCGAATCCCTGTTCTCGTGATACTAAGTGGATCCAACCAAGAAATTTCTACAAGAAATTCGATATATTTGCTCTCGGTAAATCATCATGCAACAAGTACAAAATCATGAGGATGGATCAATTTTATCCTGATAGGCCAGAATTTATGAACTACGAAATCTATGACTTTAACTCTAATTCGTGGAGAGTTGTTGGTAAGATTACAGACTGGTTCATACCAAGGTGTATGGACCGTGGCATGTCTGTGAATGGAAACACTTACTGGCTTGCTTCTACTAATAAAGACTTGACCAGTAGTAGTTTTTTACTTGGTTTTGATTTTTCAACGGAGAGATTTGTAAGGGTGTCTCTTCCGGGTGATCATCTCTCTGATCCTGTTTTTGCTTTAGCAGTTACTAGAGAAGATCCAAAAATATGTGTTGCTATCATTCAGGAACTCCATATAGATGTATGGATTGCAACTACGATTGAGAGTACGGGAGCTGCGTCATGGAGCAAGTTCCTATCAGTTGAATTAGCAAATCTCTACGAGCGTATTTGCTTGGATAGTTGGATGAATTTCTTGGTCGACCAGAAGAACAAAGTTTTGGTGTATCGTGATGGTAACTATTGGATCTCCAATGTTTTCTTGCACGTTGTGGGAGAGGATAAATGTATACAAGTGGATCATCATGATTCAGTGTCTAGATGCTCACTTGTCGTCAATTATGTTCCAACTTTGGTTCATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

367

Amino Acids

42.67

Weight (kDa)

6.59

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 45 2.4e-09 F-box domain
F-box-like PF12937 7 - 43 1.2e-06 F-box-like
FBA_1 PF07734 59 - 367 1.5e-80 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 105
AccI GTMKAC 3 cut(s) 354, 939, 1027
AccII CGCG 1 cut(s) 56
AclI AACGTT 1 cut(s) 111
AclWI GGATC 8 cut(s) 269, 397, 410, 495, 737, 770, 992, 1044
AcsI RAATTY 5 cut(s) 286, 415, 428, 512, 928
AdeI CACNNNGTG 1 cut(s) 1009
AfaI GTAC 2 cut(s) 470, 847
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 3 cut(s) 285, 696, 884
AjuI GAANNNNNNNTTGG 2 cut(s) 941, 973
AluBI AGCT 1 cut(s) 854
AluI AGCT 1 cut(s) 854
Alw26I GTCTC 1 cut(s) 723
AlwI GGATC 8 cut(s) 269, 397, 410, 495, 737, 770, 992, 1044
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 1 cut(s) 506
ApeKI GCWGC 2 cut(s) 142, 854
ApoI RAATTY 5 cut(s) 286, 415, 428, 512, 928
ArsI GACNNNNNNTTYG 2 cut(s) 58, 90
AspS9I GGNCC 2 cut(s) 79, 601
AsuC2I CCSGG 1 cut(s) 726
AsuHPI GGTGA 1 cut(s) 740
AsuII TTCGAA 1 cut(s) 374
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 2 cut(s) 79, 601
BamHI GGATCC 1 cut(s) 402
BauI CACGAG 2 cut(s) 206, 387
BbvI GCAGC 2 cut(s) 154, 841
BccI CCATC 3 cut(s) 99, 478, 965
BceAI ACGGC 1 cut(s) 346
BcgI CGANNNNNNTGC 2 cut(s) 422, 456
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 1 cut(s) 726
BcoDI GTCTC 1 cut(s) 723
BfaI CTAG 2 cut(s) 768, 1056
BglII AGATCT 1 cut(s) 22
BisI GCNGC 2 cut(s) 143, 855
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 2 cut(s) 144, 856
Bme1390I CCNGG 1 cut(s) 726
Bme18I GGWCC 2 cut(s) 79, 601
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 2 cut(s) 79, 601
BmiI GGNNCC 2 cut(s) 63, 404
BmrFI CCNGG 1 cut(s) 726
BmsI GCATC 1 cut(s) 1049
Bpu1102I GCTNAGC 1 cut(s) 138
Bpu14I TTCGAA 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 726
BsaBI GATNNNNATC 1 cut(s) 88
BsaJI CCNNGG 4 cut(s) 30, 161, 590, 604
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse1I ACTGG 3 cut(s) 584, 638, 663
Bse3DI GCAATG 1 cut(s) 322
Bse8I GATNNNNATC 1 cut(s) 88
BseDI CCNNGG 4 cut(s) 30, 161, 590, 604
BseGI GGATG 3 cut(s) 95, 489, 930
BseJI GATNNNNATC 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 3 cut(s) 584, 638, 663
BseXI GCAGC 2 cut(s) 154, 841
Bsh1236I CGCG 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 508
BsiEI CGRYCG 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 1 cut(s) 725
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 723
BsnI GGCC 1 cut(s) 508
BsoBI CYCGRG 1 cut(s) 29
Bsp119I TTCGAA 1 cut(s) 374
Bsp1720I GCTNAGC 1 cut(s) 138
Bsp68I TCGCGA 1 cut(s) 56
BspANI GGCC 1 cut(s) 508
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 1 cut(s) 56
BspHI TCATGA 2 cut(s) 477, 1042
BspLI GGNNCC 2 cut(s) 63, 404
BspPI GGATC 8 cut(s) 269, 397, 410, 495, 737, 770, 992, 1044
BspT104I TTCGAA 1 cut(s) 374
BsrDI GCAATG 1 cut(s) 322
BsrI ACTGG 3 cut(s) 584, 638, 663
BssECI CCNNGG 4 cut(s) 30, 161, 590, 604
BssNAI GTATAC 1 cut(s) 1028
BssSI CACGAG 2 cut(s) 206, 387
BssT1I CCWWGG 2 cut(s) 161, 590
Bst1107I GTATAC 1 cut(s) 1028
Bst2BI CACGAG 2 cut(s) 206, 387
Bst4CI ACNGT 3 cut(s) 70, 352, 605
Bst6I CTCTTC 2 cut(s) 2, 726
BstAPI GCANNNNNTGC 1 cut(s) 172
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 2 cut(s) 138, 396
BstDSI CCRYGG 1 cut(s) 604
BstF5I GGATG 3 cut(s) 95, 489, 930
BstFNI CGCG 1 cut(s) 56
BstMAI GTCTC 1 cut(s) 723
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 613
BstSCI CCNGG 1 cut(s) 724
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 154, 841
BstX2I RGATCY 5 cut(s) 22, 274, 402, 775, 984
BstYI RGATCY 5 cut(s) 22, 274, 402, 775, 984
BstZ17I GTATAC 1 cut(s) 1028
BsuRI GGCC 1 cut(s) 508
BtgI CCRYGG 1 cut(s) 604
BtsCI GGATG 3 cut(s) 95, 489, 930
BtsIMutI CAGTG 1 cut(s) 1056
BtuMI TCGCGA 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 639
CciI TCATGA 2 cut(s) 477, 1042
Cfr13I GGNCC 2 cut(s) 79, 601
CseI GACGC 2 cut(s) 202, 846
Csp6I GTAC 2 cut(s) 469, 846
CviAII CATG 6 cut(s) 181, 459, 478, 610, 861, 1043
CviJI RGCY 4 cut(s) 333, 508, 637, 854
CviKI_1 RGCY 4 cut(s) 333, 508, 637, 854
CviQI GTAC 2 cut(s) 469, 846
DdeI CTNAG 2 cut(s) 138, 396
DraIII CACNNNGTG 1 cut(s) 1009
Eam1104I CTCTTC 2 cut(s) 2, 726
EarI CTCTTC 2 cut(s) 2, 726
Eco130I CCWWGG 2 cut(s) 161, 590
Eco47I GGWCC 2 cut(s) 79, 601
Eco88I CYCGRG 1 cut(s) 29
EcoT14I CCWWGG 2 cut(s) 161, 590
ErhI CCWWGG 2 cut(s) 161, 590
FaeI CATG 6 cut(s) 184, 462, 481, 613, 864, 1046
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FatI CATG 6 cut(s) 180, 458, 477, 609, 860, 1042
FbaI TGATCA 1 cut(s) 730
FblI GTMKAC 3 cut(s) 354, 939, 1027
Fnu4HI GCNGC 2 cut(s) 143, 855
FokI GGATG 3 cut(s) 82, 496, 937
Fsp4HI GCNGC 2 cut(s) 143, 855
FspBI CTAG 2 cut(s) 768, 1056
GluI GCNGC 2 cut(s) 143, 855
HaeIII GGCC 1 cut(s) 508
HapII CCGG 1 cut(s) 725
HgaI GACGC 2 cut(s) 202, 846
Hin1II CATG 6 cut(s) 184, 462, 481, 613, 864, 1046
HincII GTYRAC 2 cut(s) 260, 940
HindII GTYRAC 2 cut(s) 260, 940
HinfI GANTC 3 cut(s) 363, 376, 1046
HpaII CCGG 1 cut(s) 725
HphI GGTGA 1 cut(s) 740
Hpy166II GTNNAC 5 cut(s) 247, 260, 355, 940, 1028
Hpy188I TCNGA 4 cut(s) 66, 83, 117, 742
Hpy8I GTNNAC 5 cut(s) 247, 260, 355, 940, 1028
Hpy99I CGWCG 2 cut(s) 218, 332
HpyCH4III ACNGT 3 cut(s) 70, 352, 605
HpyCH4IV ACGT 3 cut(s) 111, 315, 1005
HpyCH4V TGCA 6 cut(s) 158, 312, 345, 462, 830, 1003
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 2 cut(s) 138, 396
HpySE526I ACGT 3 cut(s) 111, 315, 1005
Hsp92II CATG 6 cut(s) 184, 462, 481, 613, 864, 1046
Ksp22I TGATCA 1 cut(s) 730
LmnI GCTCC 2 cut(s) 851, 864
Lsp1109I GCAGC 2 cut(s) 154, 841
LweI GCATC 1 cut(s) 1049
MaeI CTAG 2 cut(s) 768, 1056
MaeII ACGT 3 cut(s) 111, 315, 1005
MaeIII GTNAC 3 cut(s) 70, 763, 974
MboII GAAGA 8 cut(s) 17, 19, 134, 212, 308, 713, 785, 958
MflI RGATCY 5 cut(s) 22, 274, 402, 775, 984
MlyI GAGTC 1 cut(s) 357
MmeI TCCRAC 3 cut(s) 89, 430, 902
MnlI CCTC 5 cut(s) 25, 51, 288, 474, 1009
MseI TTAA 1 cut(s) 540
MslI CAYNNNNRTG 4 cut(s) 185, 482, 614, 816
MspI CCGG 1 cut(s) 725
MspR9I CCNGG 1 cut(s) 726
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 172
NciI CCSGG 1 cut(s) 726
NlaIII CATG 6 cut(s) 184, 462, 481, 613, 864, 1046
NlaIV GGNNCC 2 cut(s) 63, 404
NruI TCGCGA 1 cut(s) 56
NspI RCATGY 1 cut(s) 613
NspV TTCGAA 1 cut(s) 374
PagI TCATGA 2 cut(s) 477, 1042
PcsI WCGNNNNNNNCGW 3 cut(s) 117, 213, 854
PfeI GAWTC 2 cut(s) 376, 1046
PflMI CCANNNNNTGG 1 cut(s) 105
PkrI GCNGC 2 cut(s) 144, 856
PleI GAGTC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 357
Psp1406I AACGTT 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 63, 404
PspPI GGNCC 2 cut(s) 79, 601
PsuI RGATCY 5 cut(s) 22, 274, 402, 775, 984
RruI TCGCGA 1 cut(s) 56
RsaI GTAC 2 cut(s) 470, 847
RsaNI GTAC 2 cut(s) 469, 846
RseI CAYNNNNRTG 4 cut(s) 185, 482, 614, 816
SalI GTCGAC 1 cut(s) 938
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 2 cut(s) 143, 855
Sau96I GGNCC 2 cut(s) 79, 601
SchI GAGTC 1 cut(s) 357
ScrFI CCNGG 1 cut(s) 726
SetI ASST 7 cut(s) 114, 194, 246, 318, 596, 856, 1008
SfaNI GCATC 1 cut(s) 1049
SfuI TTCGAA 1 cut(s) 374
SinI GGWCC 2 cut(s) 79, 601
SmiMI CAYNNNNRTG 4 cut(s) 185, 482, 614, 816
SspMI CTAG 2 cut(s) 768, 1056
StyD4I CCNGG 1 cut(s) 724
StyI CCWWGG 2 cut(s) 161, 590
TaaI ACNGT 3 cut(s) 70, 352, 605
TaiI ACGT 3 cut(s) 114, 318, 1008
TaqI TCGA 5 cut(s) 120, 216, 374, 432, 939
TatI WGTACW 1 cut(s) 468
TfiI GAWTC 2 cut(s) 376, 1046
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TscAI CASTG 1 cut(s) 1056
TseI GCWGC 2 cut(s) 142, 854
TspDTI ATGAA 6 cut(s) 212, 311, 533, 574, 941, 1085
TspGWI ACGGA 1 cut(s) 713
TspRI CASTG 1 cut(s) 1056
Van91I CCANNNNNTGG 1 cut(s) 105
VpaK11BI GGWCC 2 cut(s) 79, 601
XapI RAATTY 5 cut(s) 286, 415, 428, 512, 928
XbaI TCTAGA 1 cut(s) 1055
XceI RCATGY 1 cut(s) 613
XmiI GTMKAC 3 cut(s) 354, 939, 1027
XspI CTAG 2 cut(s) 768, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.