AT3G22940

peroxiredoxin activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
8131468 .. 8132706
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G22940.1

Sequence Viewer

Length: 1239 bp
ATGCCCTTAGAAGAGATACTCTCAAGACTTCCATTGAAGTCTACGAGAGCAGTGAGATCGACTTGCAAAAAGTGGGACTCTTTATTCAAAAATCGGAGCTTTATTAGTAAAGCAGCAGCAGCAAGAGAAGGAGAGTCTCAGATGGTCGTGTTGATGGATCACAATCTTCATTTAGTGAGCTTCTTCTTCGGCAGTGATACTTCTGTAGAGATTAAAGGTAAACGTATTTGTCTAAACGACGATTCAGATTCAGAACAAGTCAAGATATCTCAAGTTTTTCACTGTGAGGGTTTGTTGTTATGTATCTTGAAAGATGATAACTTTAGTCTTGTTGTTTGGAACCCGTATTGGGGACAAACAAGGTGGATCAAACCCAGATGTTCTTTCGAAATACCCCAGGGATGTGACATGTACAGGTACGCTATTGGATACGACAACAAGAGACGCAACCACAAGATCTTGAGGTTTATAGATTATGAATTCCATTACCCTCGAGACAACGTTGTTTTGTGGTATGAAATCTATGATTTTGAGTCTGATTTATGGACGACTCTTGATGTTACTACTCCACATTGGTTGATAAATTGTGGTAACCGTGGTGTTACTCTCAAGGGAAACACTTACTGGTGTGCTAAAAAAAGGAACTCTGACCTTTTTCTCAATGCTGATCATATAATCTGTTTTGATTTCACAAGTGAGAGGTTTGGTCCGCTTCTGCTTTTGCCGTTTAGTGATTTGGATGGTGTTGTTACTCTAGCTTGTGTTAGAGAGGAGAAGCTTGCGGCTTTAGTTTGTCACGAGGATGTTGTTGAGGTTTGGATTACGATTAAGATTGAGGCCAATGAGGTATTGTGGAGCAAGTTCTTGACAGTGAATGTTGATTTGGGTGATGAGATTCCGAGTTCACTGACATATGGTAGTTTTTTCATCGACGAGGAGAAGAAAGTTGCTATGATTTTTGATAAAACTTTGGATCGCGGCGACACAGTTCACATCATGGGAGAGGCTGGATATGGTGGACAAGTTGATCTCGGAGAACCGGTTAATAAAAGACGTTGCCCACTTGTGTGCTCTTATGTTCCGAGTTTAGTGCAAATCAAGAAACCTGCAGGATTCCAAAGGAAACAGCAAAGCAAGTTAGAAAAGCGTCAATATGTTCGAAACATATCGAAACTTCGCGCACTTAAAACCCAAAGTTCTTGGACATTAAGTATGTCACTTGAATGTCATCAACAGTAA

Protein Analysis

412

Amino Acids

47.63

Weight (kDa)

7.1

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 47 - 366 4.3e-107 F-box associated beta propeller domain
FBA_3 PF08268 81 - 287 2.3e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1114
AccI GTMKAC 1 cut(s) 41
AccII CGCG 2 cut(s) 978, 1179
AciI CCGC 3 cut(s) 710, 782, 978
AclI AACGTT 1 cut(s) 501
AclWI GGATC 3 cut(s) 165, 374, 981
AcsI RAATTY 1 cut(s) 479
AfaI GTAC 2 cut(s) 413, 419
AfiI CCNNNNNNNGG 2 cut(s) 349, 350
AflIII ACRYGT 1 cut(s) 408
AgeI ACCGGT 1 cut(s) 1039
AgsI TTSAA 4 cut(s) 37, 88, 310, 1223
AjnI CCWGG 1 cut(s) 396
AjuI GAANNNNNNNTTGG 2 cut(s) 866, 898
AleI CACNNNNGTG 1 cut(s) 1066
AluBI AGCT 4 cut(s) 99, 180, 758, 778
AluI AGCT 4 cut(s) 99, 180, 758, 778
Alw21I GWGCWC 1 cut(s) 1073
Alw26I GTCTC 3 cut(s) 141, 436, 489
AlwI GGATC 3 cut(s) 165, 374, 981
Ama87I CYCGRG 1 cut(s) 492
AoxI GGCC 1 cut(s) 837
ApeKI GCWGC 3 cut(s) 113, 116, 119
ApoI RAATTY 1 cut(s) 479
AsiGI ACCGGT 1 cut(s) 1039
AspLEI GCGC 1 cut(s) 1181
AspS9I GGNCC 1 cut(s) 707
AsuHPI GGTGA 1 cut(s) 899
AsuII TTCGAA 2 cut(s) 387, 1159
AvaI CYCGRG 1 cut(s) 492
AvaII GGWCC 1 cut(s) 707
BaeI ACNNNNGTAYC 2 cut(s) 189, 222
BauI CACGAG 1 cut(s) 797
Bbv12I GWGCWC 1 cut(s) 1073
BbvI GCAGC 3 cut(s) 125, 128, 131
BccI CCATC 3 cut(s) 136, 148, 734
BceAI ACGGC 1 cut(s) 709
BcgI CGANNNNNNTGC 4 cut(s) 39, 73, 1072, 1106
BciT130I CCWGG 1 cut(s) 398
BciVI GTATCC 1 cut(s) 422
BclI TGATCA 1 cut(s) 667
BcoDI GTCTC 3 cut(s) 141, 436, 489
BfaI CTAG 1 cut(s) 755
BfmI CTRYAG 2 cut(s) 204, 1107
BfuAI ACCTGC 1 cut(s) 1114
BfuI GTATCC 1 cut(s) 422
BglII AGATCT 1 cut(s) 456
BisI GCNGC 5 cut(s) 114, 117, 120, 783, 979
BlsI GCNGC 5 cut(s) 115, 118, 121, 784, 980
Bme1390I CCNGG 1 cut(s) 398
Bme18I GGWCC 1 cut(s) 707
BmeT110I CYCGRG 1 cut(s) 492
BmgT120I GGNCC 1 cut(s) 707
BmiI GGNNCC 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 398
BplI GAGNNNNNCTC 1 cut(s) 37
Bpu14I TTCGAA 2 cut(s) 387, 1159
BpuEI CTTGAG 4 cut(s) 7, 255, 481, 593
BsaBI GATNNNNATC 1 cut(s) 162
BsaJI CCNNGG 3 cut(s) 396, 397, 595
BsaWI WCCGGW 1 cut(s) 1039
BsaXI ACNNNNNCTCC 2 cut(s) 1026, 1056
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 350
Bse118I RCCGGY 1 cut(s) 1039
Bse1I ACTGG 1 cut(s) 629
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 3 cut(s) 396, 397, 595
BseGI GGATG 3 cut(s) 407, 745, 808
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 349, 350
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 629
BseRI GAGGAG 2 cut(s) 785, 950
BseXI GCAGC 3 cut(s) 125, 128, 131
Bsh1236I CGCG 2 cut(s) 978, 1179
BshFI GGCC 1 cut(s) 839
BshTI ACCGGT 1 cut(s) 1039
BsiHKAI GWGCWC 1 cut(s) 1073
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 1 cut(s) 1040
BslFI GGGAC 2 cut(s) 89, 366
BslI CCNNNNNNNGG 2 cut(s) 349, 350
BsmAI GTCTC 3 cut(s) 141, 436, 489
BsmBI CGTCTC 1 cut(s) 436
BsmFI GGGAC 2 cut(s) 89, 366
BsnI GGCC 1 cut(s) 839
BsoBI CYCGRG 1 cut(s) 492
Bsp119I TTCGAA 2 cut(s) 387, 1159
Bsp1286I GDGCHC 1 cut(s) 1073
Bsp1407I TGTACA 1 cut(s) 411
Bsp143I GATC 7 cut(s) 56, 157, 366, 456, 667, 973, 1027
BspACI CCGC 3 cut(s) 710, 782, 978
BspANI GGCC 1 cut(s) 839
BspCNI CTCAG 1 cut(s) 151
BspFNI CGCG 2 cut(s) 978, 1179
BspLI GGNNCC 1 cut(s) 341
BspMAI CTGCAG 1 cut(s) 1111
BspMI ACCTGC 1 cut(s) 1114
BspPI GGATC 3 cut(s) 165, 374, 981
BspT104I TTCGAA 2 cut(s) 387, 1159
BsrFI RCCGGY 1 cut(s) 1039
BsrGI TGTACA 1 cut(s) 411
BsrI ACTGG 1 cut(s) 629
BssAI RCCGGY 1 cut(s) 1039
BssECI CCNNGG 3 cut(s) 396, 397, 595
BssMI GATC 7 cut(s) 56, 157, 366, 456, 667, 973, 1027
BssSI CACGAG 1 cut(s) 797
Bst2BI CACGAG 1 cut(s) 797
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 5 cut(s) 284, 596, 871, 988, 1236
Bst6I CTCTTC 1 cut(s) 6
BstAUI TGTACA 1 cut(s) 411
BstBI TTCGAA 2 cut(s) 387, 1159
BstC8I GCNNGC 1 cut(s) 780
BstDEI CTNAG 2 cut(s) 7, 138
BstDSI CCRYGG 1 cut(s) 595
BstEII GGTNACC 1 cut(s) 590
BstF5I GGATG 3 cut(s) 407, 745, 808
BstFNI CGCG 2 cut(s) 978, 1179
BstHHI GCGC 1 cut(s) 1181
BstKTI GATC 7 cut(s) 59, 160, 369, 459, 670, 976, 1030
BstMAI GTCTC 3 cut(s) 141, 436, 489
BstMBI GATC 7 cut(s) 56, 157, 366, 456, 667, 973, 1027
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 398
BstNSI RCATGY 1 cut(s) 412
BstPI GGTNACC 1 cut(s) 590
BstSCI CCNGG 1 cut(s) 396
BstSFI CTRYAG 2 cut(s) 204, 1107
BstUI CGCG 2 cut(s) 978, 1179
BstV1I GCAGC 3 cut(s) 125, 128, 131
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
BsuI GTATCC 1 cut(s) 422
BsuRI GGCC 1 cut(s) 839
BtgI CCRYGG 1 cut(s) 595
BtsCI GGATG 3 cut(s) 407, 745, 808
BtsI GCAGTG 2 cut(s) 57, 199
BtsIMutI CAGTG 5 cut(s) 57, 199, 280, 876, 905
BveI ACCTGC 1 cut(s) 1114
Cac8I GCNNGC 1 cut(s) 780
CfoI GCGC 1 cut(s) 1181
Cfr10I RCCGGY 1 cut(s) 1039
Cfr13I GGNCC 1 cut(s) 707
CseI GACGC 2 cut(s) 453, 1136
Csp6I GTAC 2 cut(s) 412, 418
CspAI ACCGGT 1 cut(s) 1039
CspCI CAANNNNNGTGG 4 cut(s) 344, 379, 558, 593
CviAII CATG 2 cut(s) 409, 997
CviJI RGCY 7 cut(s) 99, 180, 758, 778, 785, 839, 1007
CviKI_1 RGCY 7 cut(s) 99, 180, 758, 778, 785, 839, 1007
CviQI GTAC 2 cut(s) 412, 418
DdeI CTNAG 2 cut(s) 7, 138
DpnI GATC 7 cut(s) 58, 159, 368, 458, 669, 975, 1029
DpnII GATC 7 cut(s) 56, 157, 366, 456, 667, 973, 1027
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco32I GATATC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 707
Eco88I CYCGRG 1 cut(s) 492
Eco91I GGTNACC 1 cut(s) 590
EcoO65I GGTNACC 1 cut(s) 590
EcoRI GAATTC 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 396
EcoRV GATATC 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 436
FaeI CATG 2 cut(s) 412, 1000
FaqI GGGAC 2 cut(s) 89, 366
FatI CATG 2 cut(s) 408, 996
FauNDI CATATG 1 cut(s) 913
FbaI TGATCA 1 cut(s) 667
FblI GTMKAC 1 cut(s) 41
Fnu4HI GCNGC 5 cut(s) 114, 117, 120, 783, 979
FokI GGATG 3 cut(s) 414, 752, 815
Fsp4HI GCNGC 5 cut(s) 114, 117, 120, 783, 979
FspBI CTAG 1 cut(s) 755
GlaI GCGC 1 cut(s) 1180
GluI GCNGC 5 cut(s) 114, 117, 120, 783, 979
HaeIII GGCC 1 cut(s) 839
HapII CCGG 1 cut(s) 1040
HgaI GACGC 2 cut(s) 453, 1136
HhaI GCGC 1 cut(s) 1181
Hin1II CATG 2 cut(s) 412, 1000
Hin6I GCGC 1 cut(s) 1179
HinP1I GCGC 1 cut(s) 1179
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 8 cut(s) 77, 134, 242, 248, 533, 550, 895, 1113
HpaII CCGG 1 cut(s) 1040
HphI GGTGA 1 cut(s) 899
Hpy166II GTNNAC 5 cut(s) 42, 221, 905, 991, 1019
Hpy188I TCNGA 9 cut(s) 96, 141, 247, 253, 538, 649, 900, 1034, 1083
Hpy188III TCNNGA 9 cut(s) 24, 262, 307, 460, 494, 554, 797, 865, 1099
Hpy8I GTNNAC 5 cut(s) 42, 221, 905, 991, 1019
Hpy99I CGWCG 2 cut(s) 242, 935
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 5 cut(s) 284, 596, 871, 988, 1236
HpyCH4IV ACGT 3 cut(s) 223, 501, 1054
HpyCH4V TGCA 3 cut(s) 66, 1093, 1109
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 2 cut(s) 7, 138
HpySE526I ACGT 3 cut(s) 223, 501, 1054
Hsp92II CATG 2 cut(s) 412, 1000
HspAI GCGC 1 cut(s) 1179
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 7 cut(s) 56, 157, 366, 456, 667, 973, 1027
LmnI GCTCC 2 cut(s) 96, 855
LpnPI CCDG 9 cut(s) 383, 388, 400, 410, 610, 993, 1053, 1095, 1119
Lsp1109I GCAGC 3 cut(s) 125, 128, 131
MaeI CTAG 1 cut(s) 755
MaeII ACGT 3 cut(s) 223, 501, 1054
MaeIII GTNAC 7 cut(s) 404, 559, 590, 601, 748, 794, 1215
MalI GATC 7 cut(s) 58, 159, 368, 458, 669, 975, 1029
MboI GATC 7 cut(s) 56, 157, 366, 456, 667, 973, 1027
MboII GAAGA 5 cut(s) 23, 158, 175, 178, 952
MflI RGATCY 1 cut(s) 456
MhlI GDGCHC 1 cut(s) 1073
MluCI AATT 2 cut(s) 479, 583
MlyI GAGTC 4 cut(s) 71, 143, 542, 544
MseI TTAA 5 cut(s) 213, 828, 1044, 1185, 1208
MslI CAYNNNNRTG 3 cut(s) 801, 1066, 1222
MspI CCGG 1 cut(s) 1040
MspR9I CCNGG 1 cut(s) 398
MvaI CCWGG 1 cut(s) 398
MvnI CGCG 2 cut(s) 978, 1179
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeI CATATG 1 cut(s) 913
NdeII GATC 7 cut(s) 56, 157, 366, 456, 667, 973, 1027
NlaIII CATG 2 cut(s) 412, 1000
NlaIV GGNNCC 1 cut(s) 341
NmuCI GTSAC 3 cut(s) 404, 794, 1215
NspI RCATGY 1 cut(s) 412
NspV TTCGAA 2 cut(s) 387, 1159
OliI CACNNNNGTG 1 cut(s) 1066
PaeR7I CTCGAG 1 cut(s) 492
PasI CCCWGGG 1 cut(s) 397
PciI ACATGT 1 cut(s) 408
PfeI GAWTC 4 cut(s) 242, 248, 895, 1113
PinAI ACCGGT 1 cut(s) 1039
PkrI GCNGC 5 cut(s) 115, 118, 121, 784, 980
PleI GAGTC 4 cut(s) 71, 142, 541, 544
PpsI GAGTC 4 cut(s) 71, 142, 541, 544
PscI ACATGT 1 cut(s) 408
Psp1406I AACGTT 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 396
PspEI GGTNACC 1 cut(s) 590
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 1 cut(s) 341
PspPI GGNCC 1 cut(s) 707
PstI CTGCAG 1 cut(s) 1111
PsuI RGATCY 1 cut(s) 456
RsaI GTAC 2 cut(s) 413, 419
RsaNI GTAC 2 cut(s) 412, 418
RseI CAYNNNNRTG 3 cut(s) 801, 1066, 1222
SaqAI TTAA 5 cut(s) 213, 828, 1044, 1185, 1208
SatI GCNGC 5 cut(s) 114, 117, 120, 783, 979
Sau3AI GATC 7 cut(s) 56, 157, 366, 456, 667, 973, 1027
Sau96I GGNCC 1 cut(s) 707
SbfI CCTGCAGG 1 cut(s) 1111
SchI GAGTC 4 cut(s) 71, 143, 542, 544
ScrFI CCNGG 1 cut(s) 398
SdaI CCTGCAGG 1 cut(s) 1111
SduI GDGCHC 1 cut(s) 1073
SfcI CTRYAG 2 cut(s) 204, 1107
Sfr274I CTCGAG 1 cut(s) 492
SfuI TTCGAA 2 cut(s) 387, 1159
SinI GGWCC 1 cut(s) 707
SlaI CTCGAG 1 cut(s) 492
SmiMI CAYNNNNRTG 3 cut(s) 801, 1066, 1222
SmlI CTYRAG 5 cut(s) 22, 270, 460, 492, 608
SmoI CTYRAG 5 cut(s) 22, 270, 460, 492, 608
Sse8387I CCTGCAGG 1 cut(s) 1111
Sse9I AATT 2 cut(s) 479, 583
SsiI CCGC 3 cut(s) 710, 782, 978
SspMI CTAG 1 cut(s) 755
StyD4I CCNGG 1 cut(s) 396
TaaI ACNGT 5 cut(s) 284, 596, 871, 988, 1236
TaiI ACGT 3 cut(s) 226, 504, 1057
TaqI TCGA 6 cut(s) 59, 387, 493, 930, 1159, 1169
TasI AATT 2 cut(s) 479, 583
TatI WGTACW 1 cut(s) 411
TauI GCSGC 2 cut(s) 785, 981
TfiI GAWTC 4 cut(s) 242, 248, 895, 1113
Tru1I TTAA 5 cut(s) 213, 828, 1044, 1185, 1208
Tru9I TTAA 5 cut(s) 213, 828, 1044, 1185, 1208
TscAI CASTG 5 cut(s) 57, 199, 287, 876, 912
TseFI GTSAC 3 cut(s) 404, 794, 1215
TseI GCWGC 3 cut(s) 113, 116, 119
Tsp45I GTSAC 3 cut(s) 404, 794, 1215
TspDTI ATGAA 4 cut(s) 158, 492, 531, 916
TspRI CASTG 5 cut(s) 57, 199, 287, 876, 912
VpaK11BI GGWCC 1 cut(s) 707
XapI RAATTY 1 cut(s) 479
XceI RCATGY 1 cut(s) 412
XhoI CTCGAG 1 cut(s) 492
XmiI GTMKAC 1 cut(s) 41
XspI CTAG 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.