AT3G20700

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
7233525 .. 7234505
981 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20700.1

Sequence Viewer

Length: 981 bp
ATGCGATCTACTTGCAAAAAGTGGTACGTTTTAACCAAAGATCAGAGGTTTGCAAAAAAACGGGGAAAAGAGTTTCTAATGATAATGAATCGTAGGGTATATTTGATTGGCGTCAATCTCCACAACAACATTGATCTATCTATAAAGTGTAGAGGTAGACTTATTAGCAGAGACGAAACAGCTCAGGGATTCTATGTGTCTCAAGTCTTTCACTGCAATGGTTTATTGTTATCCGTATCAGGAAAAACTATTGATGACACTAGGCTTGTGGTTTGTAACCCGTATGGGGTAAAACCAAAATGGATCAATCCCAAAGATAATTACGGGAGATTAGACATATTTTCTCTCGGATTTGACAAATTATGCGGTAGCTACAAAATCTTGAGGATTTACGATTTCGATAATAAACTCCAAATCTACGATTTGAGCTCTAATTCATGGATGATTCCAAGAGACACTCTTGGACGGGATATAGAGTATATGCAAAATGGCGTGTCTTCCAAGGAAAATACTTATTGGTGTGCTAGAGATAAACAATCACAATATTGTTTTTTGTTCTGTTTTGATTTTACAAGGGAGAGATTCGGACCGCGTCTACCACTGCCCTTCAATGGAGCTTATGTGTCTCTATCTGCGGTTAAAGAAGAGCAGCTTGCAGTGTTATTTCAGCCATCGGATAAATCTGAGATAGAGATTTGGGTTACGAACAAGATTGAGCCTGAAGAAGTGTCGTGGAGCGTCTTCTTGAAAGTTGAAATGAAACTACGTGTTCTGTCTTGGAATTTCTTGATTGACAAGGAAAAGAAATTCGCAGTTGTTTTTGATAAAGACAAGGCAAAGGGGTTTAAAACCAATTACGACATAGCTTACGTCATTGGAGAAAATGGTTATTACAGAAGAGTGGATCTCCGTGAATCTCCAAACAAACCACTTTGCCGTATTGTGTCTTGTTATGTTCCAAGTTGTGTGCAAATCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

326

Amino Acids

38.2

Weight (kDa)

9.14

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 25 - 325 9.6e-89 F-box associated beta propeller domain
FBA_3 PF08268 71 - 246 1.3e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 157, 595
AccII CGCG 1 cut(s) 592
AciI CCGC 3 cut(s) 366, 590, 635
AclWI GGATC 2 cut(s) 311, 912
AcsI RAATTY 2 cut(s) 781, 806
AcuI CTGAAG 1 cut(s) 741
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 286, 611
AflIII ACRYGT 1 cut(s) 766
AgsI TTSAA 3 cut(s) 610, 748, 755
AluBI AGCT 6 cut(s) 182, 372, 429, 617, 652, 866
AluI AGCT 6 cut(s) 182, 372, 429, 617, 652, 866
Alw21I GWGCWC 1 cut(s) 431
Alw26I GTCTC 4 cut(s) 165, 204, 447, 630
AlwI GGATC 2 cut(s) 311, 912
ApeKI GCWGC 1 cut(s) 649
ApoI RAATTY 2 cut(s) 781, 806
AspS9I GGNCC 1 cut(s) 587
AvaII GGWCC 1 cut(s) 587
BanII GRGCYC 1 cut(s) 431
BbsI GAAGAC 2 cut(s) 489, 733
Bbv12I GWGCWC 1 cut(s) 431
BbvI GCAGC 1 cut(s) 661
BccI CCATC 1 cut(s) 679
BceAI ACGGC 1 cut(s) 921
BcgI CGANNNNNNTGC 1 cut(s) 28
BcoDI GTCTC 4 cut(s) 165, 204, 447, 630
BfaI CTAG 2 cut(s) 261, 525
BisI GCNGC 1 cut(s) 650
BlsI GCNGC 1 cut(s) 651
Bme18I GGWCC 1 cut(s) 587
BmgT120I GGNCC 1 cut(s) 587
BpiI GAAGAC 2 cut(s) 489, 733
BplI GAGNNNNNCTC 2 cut(s) 891, 923
Bpu10I CCTNAGC 1 cut(s) 183
BpuEI CTTGAG 2 cut(s) 186, 403
BsaAI YACGTR 1 cut(s) 767
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 501
BsaXI ACNNNNNCTCC 2 cut(s) 606, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 611
Bse3DI GCAATG 1 cut(s) 223
BseDI CCNNGG 1 cut(s) 501
BseGI GGATG 1 cut(s) 447
BseLI CCNNNNNNNGG 2 cut(s) 286, 611
BseMI GCAATG 1 cut(s) 223
BseMII CTCAG 2 cut(s) 197, 675
BseXI GCAGC 1 cut(s) 661
Bsh1236I CGCG 1 cut(s) 592
BsiHKAI GWGCWC 1 cut(s) 431
BslI CCNNNNNNNGG 2 cut(s) 286, 611
BsmAI GTCTC 4 cut(s) 165, 204, 447, 630
BsmBI CGTCTC 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 431
Bsp143I GATC 5 cut(s) 5, 40, 133, 303, 904
BspACI CCGC 3 cut(s) 366, 590, 635
BspCNI CTCAG 2 cut(s) 196, 676
BspFNI CGCG 1 cut(s) 592
BspPI GGATC 2 cut(s) 311, 912
BspQI GCTCTTC 1 cut(s) 639
BsrDI GCAATG 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 501
BssMI GATC 5 cut(s) 5, 40, 133, 303, 904
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 501
Bst6I CTCTTC 2 cut(s) 639, 892
BstACI GRCGYC 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 767
BstC8I GCNNGC 1 cut(s) 654
BstDEI CTNAG 2 cut(s) 183, 684
BstF5I GGATG 1 cut(s) 447
BstFNI CGCG 1 cut(s) 592
BstKTI GATC 5 cut(s) 8, 43, 136, 306, 907
BstMAI GTCTC 4 cut(s) 165, 204, 447, 630
BstMBI GATC 5 cut(s) 5, 40, 133, 303, 904
BstUI CGCG 1 cut(s) 592
BstV1I GCAGC 1 cut(s) 661
BstV2I GAAGAC 2 cut(s) 489, 733
BstX2I RGATCY 1 cut(s) 904
BstYI RGATCY 1 cut(s) 904
BtsCI GGATG 1 cut(s) 447
BtsI GCAGTG 3 cut(s) 211, 599, 663
BtsIMutI CAGTG 3 cut(s) 211, 599, 663
Cac8I GCNNGC 1 cut(s) 654
Cfr13I GGNCC 1 cut(s) 587
CpoI CGGWCCG 1 cut(s) 587
CseI GACGC 3 cut(s) 100, 581, 727
Csp6I GTAC 1 cut(s) 25
CspI CGGWCCG 1 cut(s) 587
CviAII CATG 1 cut(s) 438
CviJI RGCY 9 cut(s) 182, 265, 372, 429, 617, 652, 670, 718, 866
CviKI_1 RGCY 9 cut(s) 182, 265, 372, 429, 617, 652, 670, 718, 866
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 2 cut(s) 183, 684
DpnI GATC 5 cut(s) 7, 42, 135, 305, 906
DpnII GATC 5 cut(s) 5, 40, 133, 303, 904
DraI TTTAAA 1 cut(s) 847
Eam1104I CTCTTC 2 cut(s) 639, 892
EarI CTCTTC 2 cut(s) 639, 892
Ecl136II GAGCTC 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 501
Eco24I GRGCYC 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 587
Eco53kI GAGCTC 1 cut(s) 429
Eco57I CTGAAG 1 cut(s) 741
EcoICRI GAGCTC 1 cut(s) 429
EcoT14I CCWWGG 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 431
ErhI CCWWGG 1 cut(s) 501
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 1 cut(s) 441
FalI AAGNNNNNCTT 2 cut(s) 636, 668
FatI CATG 1 cut(s) 437
FblI GTMKAC 2 cut(s) 157, 595
Fnu4HI GCNGC 1 cut(s) 650
FokI GGATG 1 cut(s) 454
FriOI GRGCYC 1 cut(s) 431
Fsp4HI GCNGC 1 cut(s) 650
FspBI CTAG 2 cut(s) 261, 525
GluI GCNGC 1 cut(s) 650
HgaI GACGC 3 cut(s) 100, 581, 727
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 1 cut(s) 441
HinfI GANTC 5 cut(s) 88, 189, 445, 582, 914
Hpy166II GTNNAC 2 cut(s) 158, 596
Hpy188I TCNGA 5 cut(s) 45, 350, 587, 676, 685
Hpy188III TCNNGA 4 cut(s) 240, 382, 745, 787
Hpy8I GTNNAC 2 cut(s) 158, 596
HpyAV CCTTC 1 cut(s) 616
HpyCH4IV ACGT 3 cut(s) 27, 766, 870
HpyCH4V TGCA 6 cut(s) 15, 53, 216, 484, 656, 970
HpyF3I CTNAG 2 cut(s) 183, 684
HpySE526I ACGT 3 cut(s) 27, 766, 870
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 1 cut(s) 441
Kzo9I GATC 5 cut(s) 5, 40, 133, 303, 904
LguI GCTCTTC 1 cut(s) 639
LmnI GCTCC 2 cut(s) 614, 735
LpnPI CCDG 3 cut(s) 170, 225, 732
Lsp1109I GCAGC 1 cut(s) 661
MaeI CTAG 2 cut(s) 261, 525
MaeII ACGT 3 cut(s) 27, 766, 870
MaeIII GTNAC 2 cut(s) 275, 700
MalI GATC 5 cut(s) 7, 42, 135, 305, 906
MboI GATC 5 cut(s) 5, 40, 133, 303, 904
MboII GAAGA 5 cut(s) 489, 656, 733, 734, 909
MflI RGATCY 1 cut(s) 904
MhlI GDGCHC 1 cut(s) 431
MluCI AATT 6 cut(s) 319, 359, 433, 781, 806, 853
MnlI CCTC 3 cut(s) 39, 146, 378
MseI TTAA 3 cut(s) 32, 639, 846
MslI CAYNNNNRTG 1 cut(s) 216
MvnI CGCG 1 cut(s) 592
NdeII GATC 5 cut(s) 5, 40, 133, 303, 904
NlaIII CATG 1 cut(s) 441
PciSI GCTCTTC 1 cut(s) 639
PfeI GAWTC 5 cut(s) 88, 189, 445, 582, 914
PflFI GACNNNGTC 1 cut(s) 591
PkrI GCNGC 1 cut(s) 651
Ppu21I YACGTR 1 cut(s) 767
Psp124BI GAGCTC 1 cut(s) 431
PspPI GGNCC 1 cut(s) 587
PsuI RGATCY 1 cut(s) 904
PsyI GACNNNGTC 1 cut(s) 591
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 216
Rsr2I CGGWCCG 1 cut(s) 587
RsrII CGGWCCG 1 cut(s) 587
SacI GAGCTC 1 cut(s) 431
SapI GCTCTTC 1 cut(s) 639
SaqAI TTAA 3 cut(s) 32, 639, 846
SatI GCNGC 1 cut(s) 650
Sau3AI GATC 5 cut(s) 5, 40, 133, 303, 904
Sau96I GGNCC 1 cut(s) 587
SduI GDGCHC 1 cut(s) 431
SinI GGWCC 1 cut(s) 587
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 2 cut(s) 201, 382
SmoI CTYRAG 2 cut(s) 201, 382
Sse9I AATT 6 cut(s) 319, 359, 433, 781, 806, 853
SsiI CCGC 3 cut(s) 366, 590, 635
SspI AATATT 1 cut(s) 545
SspMI CTAG 2 cut(s) 261, 525
SstI GAGCTC 1 cut(s) 431
StyI CCWWGG 1 cut(s) 501
TaiI ACGT 3 cut(s) 30, 769, 873
TaqI TCGA 2 cut(s) 399, 975
TasI AATT 6 cut(s) 319, 359, 433, 781, 806, 853
TfiI GAWTC 5 cut(s) 88, 189, 445, 582, 914
Tru1I TTAA 3 cut(s) 32, 639, 846
Tru9I TTAA 3 cut(s) 32, 639, 846
TscAI CASTG 3 cut(s) 218, 606, 663
TseI GCWGC 1 cut(s) 649
TspDTI ATGAA 3 cut(s) 101, 426, 773
TspGWI ACGGA 2 cut(s) 223, 899
TspRI CASTG 3 cut(s) 218, 606, 663
Tth111I GACNNNGTC 1 cut(s) 591
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 2 cut(s) 781, 806
XmiI GTMKAC 2 cut(s) 157, 595
XspI CTAG 2 cut(s) 261, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.