AT3G44120

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
15878399 .. 15879830
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44120.1

Sequence Viewer

Length: 1155 bp
ATGACGTTACCGGAGCTTCCAAAGGATTTAGTAGAAGAGATACTCTGTTTTGTTCCGGCCACATCTCTGAAGCGATTACGATCCAGTTGCAAAGAATGGAATCGTTTATTCAAAGATGACAAGAGATTCGCAAGAAAGCACATTGAAAAAGCCGCAAAGCAGTTTCAACCTCTCACGTTGACGAAGAACTACAGGATTTGTCCTATAAACGTCAATCTCCATGGAACTACTCCATCTCTAGAGGTTAAAAATGAGGTCAGCTTAGTCGATCCTCACTCTAAGAATTCAGCAGCTCAGTTCAATATAGATCGAGTCTTTCACTGTGATGGCTTGTTGTTATGCACCTCCCAAAAAGATTCAAGATTCGTCGTTTGGAACCCTTTAACTGGTGTAACCAAGTGGATCGAACTCGGTGATCGTTACAACGAAGGTATGGCTTTTATTCTTGGATATGACAACAAGTCCTGTAATAAGAGCTACAAAGCCATGAGCTTTAATTATTTAGACAAGGATTCTGAAATCTACGAGTTTAGCTCTGACTCATGGAGGGTTATTGATGATATTATCAAGCCACCCCACTACATGGACTACTTTAGAGAGTGTTTCTCTTTGAAGGGAAACACTTACTGGTTGGGTATAGATAGAAGACGAAGGCCACCGGACCTTCGCATAACCTTGATCAAATTTGATTTTGGAACAGAGAGATTTGGTTATGTTTCTCTGCCTCCCCCCTGTCAAGTGCATGGTTTTGAGGCTTCTAATCTTTCCGTTGTCGGAGACGAGAAGCTTTCGGTGTTAGTACAGGGCGGTTCTACATCCAAGACTGAGGTATGGGTGACAAGTAAGATTGGTGAGGCCAATGTGGTGTCGTGGAGCAAGGTGTTATCATTGTATCCGAAGCCTGACGTTGGTTTTTGGCATGGCCTAAGTTTCTTGCTAGACGAGGAGAAGAAAGTCGTCTTGTGTTGTAAGAGTAAGGGATGGATGGAGGAAGAAGACGAGGAGAATGTTTACAGTGTTGGGGAGGATACTAAATTCATACTACTGAATTTTGGAGTTCAGACAATTGGAGGATATTCGCCAATTATTGTTAATTATGTTCCAAGTTTGGGTCAGATCGAGCTAGCTGGAAGCAAAAGGAAAAGAGATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 FBA_1 Lzipper-MIP1

Protein Analysis

384

Amino Acids

44.01

Weight (kDa)

7.51

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 43 4e-08 F-box domain
FBA_1 PF07734 60 - 373 1.9e-86 F-box associated beta propeller domain
FBA_3 PF08268 87 - 299 1.9e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 583
AciI CCGC 2 cut(s) 153, 807
AclWI GGATC 3 cut(s) 75, 263, 410
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 4 cut(s) 283, 683, 1034, 1048
AcuI CTGAAG 1 cut(s) 89
AfaI GTAC 1 cut(s) 801
AfiI CCNNNNNNNGG 4 cut(s) 386, 583, 908, 1109
AgsI TTSAA 6 cut(s) 112, 146, 167, 301, 360, 613
AhdI GACNNNNNGTC 1 cut(s) 460
AluBI AGCT 9 cut(s) 16, 261, 293, 477, 492, 534, 787, 1123, 1127
AluI AGCT 9 cut(s) 16, 261, 293, 477, 492, 534, 787, 1123, 1127
Alw26I GTCTC 1 cut(s) 771
AlwI GGATC 3 cut(s) 75, 263, 410
AoxI GGCC 4 cut(s) 57, 653, 855, 922
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 4 cut(s) 283, 683, 1034, 1048
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
AspS9I GGNCC 1 cut(s) 661
AsuHPI GGTGA 3 cut(s) 425, 847, 863
AsuNHI GCTAGC 1 cut(s) 1123
AvaII GGWCC 1 cut(s) 661
BbsI GAAGAC 2 cut(s) 652, 1002
BbvI GCAGC 1 cut(s) 302
BccI CCATC 4 cut(s) 241, 320, 975, 979
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BciVI GTATCC 2 cut(s) 903, 1021
BclI TGATCA 1 cut(s) 678
BcoDI GTCTC 1 cut(s) 771
BfaI CTAG 3 cut(s) 239, 938, 1124
BfmI CTRYAG 1 cut(s) 190
BfuI GTATCC 2 cut(s) 903, 1021
BisI GCNGC 2 cut(s) 153, 291
BlsI GCNGC 2 cut(s) 154, 292
Bme18I GGWCC 1 cut(s) 661
BmeRI GACNNNNNGTC 1 cut(s) 460
BmgT120I GGNCC 1 cut(s) 661
BmiI GGNNCC 1 cut(s) 377
BmtI GCTAGC 1 cut(s) 1127
BpiI GAAGAC 2 cut(s) 652, 1002
BplI GAGNNNNNCTC 4 cut(s) 518, 550, 590, 622
BsaBI GATNNNNATC 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 220
BsaWI WCCGGW 2 cut(s) 10, 658
Bsc4I CCNNNNNNNGG 4 cut(s) 386, 583, 908, 1109
Bse1I ACTGG 3 cut(s) 84, 391, 632
Bse8I GATNNNNATC 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 3 cut(s) 815, 986, 990
BseJI GATNNNNATC 1 cut(s) 79
BseLI CCNNNNNNNGG 4 cut(s) 386, 583, 908, 1109
BseMII CTCAG 2 cut(s) 308, 816
BseNI ACTGG 3 cut(s) 84, 391, 632
BseRI GAGGAG 2 cut(s) 959, 1016
BseXI GCAGC 1 cut(s) 302
BshFI GGCC 4 cut(s) 59, 655, 857, 924
BsiSI CCGG 3 cut(s) 11, 56, 659
BslI CCNNNNNNNGG 4 cut(s) 386, 583, 908, 1109
BsmAI GTCTC 1 cut(s) 771
BsmBI CGTCTC 1 cut(s) 771
BsnI GGCC 4 cut(s) 59, 655, 857, 924
Bsp143I GATC 7 cut(s) 80, 268, 307, 402, 415, 678, 1116
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 2 cut(s) 153, 807
BspANI GGCC 4 cut(s) 59, 655, 857, 924
BspCNI CTCAG 2 cut(s) 307, 817
BspLI GGNNCC 1 cut(s) 377
BspOI GCTAGC 1 cut(s) 1127
BspPI GGATC 3 cut(s) 75, 263, 410
BsrI ACTGG 3 cut(s) 84, 391, 632
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 7 cut(s) 80, 268, 307, 402, 415, 678, 1116
BssT1I CCWWGG 1 cut(s) 220
Bst4CI ACNGT 2 cut(s) 323, 1016
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 1125
BstDEI CTNAG 5 cut(s) 262, 279, 294, 825, 926
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 3 cut(s) 815, 986, 990
BstKTI GATC 7 cut(s) 83, 271, 310, 405, 418, 681, 1119
BstMAI GTCTC 1 cut(s) 771
BstMBI GATC 7 cut(s) 80, 268, 307, 402, 415, 678, 1116
BstSFI CTRYAG 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 302
BstV2I GAAGAC 2 cut(s) 652, 1002
BsuI GTATCC 2 cut(s) 903, 1021
BsuRI GGCC 4 cut(s) 59, 655, 857, 924
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 3 cut(s) 815, 986, 990
BtsIMutI CAGTG 2 cut(s) 319, 1021
Cac8I GCNNGC 1 cut(s) 1125
Cfr13I GGNCC 1 cut(s) 661
Csp6I GTAC 1 cut(s) 800
CviAII CATG 6 cut(s) 221, 487, 543, 583, 743, 920
CviQI GTAC 1 cut(s) 800
DdeI CTNAG 5 cut(s) 262, 279, 294, 825, 926
DpnI GATC 7 cut(s) 82, 270, 309, 404, 417, 680, 1118
DpnII GATC 7 cut(s) 80, 268, 307, 402, 415, 678, 1116
DriI GACNNNNNGTC 1 cut(s) 460
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 30
Eam1105I GACNNNNNGTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 661
Eco57I CTGAAG 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
Esp3I CGTCTC 1 cut(s) 771
FaeI CATG 6 cut(s) 224, 490, 546, 586, 746, 923
FatI CATG 6 cut(s) 220, 486, 542, 582, 742, 919
FbaI TGATCA 1 cut(s) 678
Fnu4HI GCNGC 2 cut(s) 153, 291
FokI GGATG 3 cut(s) 802, 993, 997
Fsp4HI GCNGC 2 cut(s) 153, 291
FspBI CTAG 3 cut(s) 239, 938, 1124
GluI GCNGC 2 cut(s) 153, 291
HaeIII GGCC 4 cut(s) 59, 655, 857, 924
HapII CCGG 3 cut(s) 11, 56, 659
Hin1II CATG 6 cut(s) 224, 490, 546, 586, 746, 923
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 7 cut(s) 100, 126, 312, 356, 363, 512, 539
HpaII CCGG 3 cut(s) 11, 56, 659
HphI GGTGA 3 cut(s) 425, 847, 863
Hpy166II GTNNAC 2 cut(s) 180, 1012
Hpy188I TCNGA 7 cut(s) 69, 517, 538, 776, 897, 1062, 1116
Hpy188III TCNNGA 2 cut(s) 239, 360
Hpy8I GTNNAC 2 cut(s) 180, 1012
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 4 cut(s) 422, 607, 645, 674
HpyCH4III ACNGT 2 cut(s) 323, 1016
HpyCH4IV ACGT 4 cut(s) 5, 176, 210, 906
HpyCH4V TGCA 3 cut(s) 90, 342, 742
HpyF3I CTNAG 5 cut(s) 262, 279, 294, 825, 926
HpySE526I ACGT 4 cut(s) 5, 176, 210, 906
Hsp92II CATG 6 cut(s) 224, 490, 546, 586, 746, 923
Ksp22I TGATCA 1 cut(s) 678
Kzo9I GATC 7 cut(s) 80, 268, 307, 402, 415, 678, 1116
LmnI GCTCC 2 cut(s) 13, 873
Lsp1109I GCAGC 1 cut(s) 302
MaeI CTAG 3 cut(s) 239, 938, 1124
MaeII ACGT 4 cut(s) 5, 176, 210, 906
MaeIII GTNAC 4 cut(s) 6, 391, 419, 835
MalI GATC 7 cut(s) 82, 270, 309, 404, 417, 680, 1118
MboI GATC 7 cut(s) 80, 268, 307, 402, 415, 678, 1116
MboII GAAGA 6 cut(s) 47, 196, 657, 961, 1004, 1007
MfeI CAATTG 1 cut(s) 1065
MluCI AATT 8 cut(s) 283, 496, 683, 1034, 1048, 1065, 1083, 1093
MlyI GAGTC 2 cut(s) 321, 533
MmeI TCCRAC 1 cut(s) 754
MseI TTAA 4 cut(s) 246, 383, 495, 1092
MslI CAYNNNNRTG 1 cut(s) 324
MspI CCGG 3 cut(s) 11, 56, 659
MunI CAATTG 1 cut(s) 1065
NcoI CCATGG 1 cut(s) 220
NdeII GATC 7 cut(s) 80, 268, 307, 402, 415, 678, 1116
NheI GCTAGC 1 cut(s) 1123
NlaIII CATG 6 cut(s) 224, 490, 546, 586, 746, 923
NlaIV GGNNCC 1 cut(s) 377
NmuCI GTSAC 1 cut(s) 835
PfeI GAWTC 5 cut(s) 100, 126, 356, 363, 512
PflMI CCANNNNNTGG 1 cut(s) 583
PkrI GCNGC 2 cut(s) 154, 292
PleI GAGTC 2 cut(s) 320, 533
PpsI GAGTC 2 cut(s) 320, 533
PspN4I GGNNCC 1 cut(s) 377
PspPI GGNCC 1 cut(s) 661
RsaI GTAC 1 cut(s) 801
RsaNI GTAC 1 cut(s) 800
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 4 cut(s) 246, 383, 495, 1092
SatI GCNGC 2 cut(s) 153, 291
Sau3AI GATC 7 cut(s) 80, 268, 307, 402, 415, 678, 1116
Sau96I GGNCC 1 cut(s) 661
SchI GAGTC 2 cut(s) 321, 533
SfcI CTRYAG 1 cut(s) 190
SinI GGWCC 1 cut(s) 661
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 8 cut(s) 283, 496, 683, 1034, 1048, 1065, 1083, 1093
SsiI CCGC 2 cut(s) 153, 807
SspMI CTAG 3 cut(s) 239, 938, 1124
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 323, 1016
TaiI ACGT 4 cut(s) 8, 179, 213, 909
TaqI TCGA 4 cut(s) 267, 310, 405, 1119
TasI AATT 8 cut(s) 283, 496, 683, 1034, 1048, 1065, 1083, 1093
TatI WGTACW 1 cut(s) 799
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 5 cut(s) 100, 126, 356, 363, 512
Tru1I TTAA 4 cut(s) 246, 383, 495, 1092
Tru9I TTAA 4 cut(s) 246, 383, 495, 1092
TscAI CASTG 2 cut(s) 326, 1021
TseFI GTSAC 1 cut(s) 835
TseI GCWGC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 835
TspDTI ATGAA 1 cut(s) 1027
TspGWI ACGGA 1 cut(s) 757
TspRI CASTG 2 cut(s) 326, 1021
Van91I CCANNNNNTGG 1 cut(s) 583
VpaK11BI GGWCC 1 cut(s) 661
XapI RAATTY 4 cut(s) 283, 683, 1034, 1048
XbaI TCTAGA 1 cut(s) 238
XspI CTAG 3 cut(s) 239, 938, 1124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.