AT5G36190

ribosomal small subunit binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000186
Physical Location & Seq
Reverse (-)
14243109 .. 14243546
438 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G36190.1

Sequence Viewer

Length: 438 bp
ATGCTCTCATACCAACTTATATTTTTCACTGCAATGGTTTATTGTTATTGTTATACATCGCCAACGATGACATCAAGCTTGCGGTTACGAACCCTTATTTTGGGCAAACAAAGGTGGATCAAACCTAGAAATTTTTATCAGTTTTGTGACAAGTACGCTATCGGATACGAGAACAAGAAGAACAACTCACTTCGTAACCACAAGATCTTGAGATTTAATGATGGATCCGTCGCGAACTACCGAATTTATGAGTTTGAAATCTACAATTTTAACTCTGATTCATGGAAGGTTTTTGACTTCACTCCCGACTGGGATATCTCTTTTACTGACCTTAGCGTGTCTCTCAAGGGGTATACTTACTGGCTGATCCGTTCCAACGGGCTGATCCAAGAATATTATGCTCGAAGTCTGAGGAAAATGATGATCAAGAATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran F-box FBA_1 RLI

Protein Analysis

145

Amino Acids

17.63

Weight (kDa)

9.47

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 33 - 126 4.8e-29 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 353
AccII CGCG 1 cut(s) 233
AciI CCGC 1 cut(s) 82
AclWI GGATC 5 cut(s) 125, 219, 232, 361, 379
AcsI RAATTY 2 cut(s) 130, 243
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 1 cut(s) 257
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 345
AlwI GGATC 5 cut(s) 125, 219, 232, 361, 379
ApoI RAATTY 2 cut(s) 130, 243
BamHI GGATCC 1 cut(s) 224
BccI CCATC 1 cut(s) 215
BciVI GTATCC 1 cut(s) 158
BclI TGATCA 1 cut(s) 423
BcoDI GTCTC 1 cut(s) 345
BfaI CTAG 1 cut(s) 126
BfuI GTATCC 1 cut(s) 158
BglII AGATCT 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 226
BmrI ACTGGG 1 cut(s) 319
BmuI ACTGGG 1 cut(s) 319
Bpu10I CCTNAGC 1 cut(s) 332
BpuEI CTTGAG 2 cut(s) 229, 329
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 2 cut(s) 314, 365
Bse3DI GCAATG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 401
BseNI ACTGG 2 cut(s) 314, 365
Bsh1236I CGCG 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 345
Bsp143I GATC 6 cut(s) 117, 204, 224, 366, 384, 423
Bsp68I TCGCGA 1 cut(s) 233
BspACI CCGC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 402
BspFNI CGCG 1 cut(s) 233
BspLI GGNNCC 1 cut(s) 226
BspPI GGATC 5 cut(s) 125, 219, 232, 361, 379
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 2 cut(s) 314, 365
BssMI GATC 6 cut(s) 117, 204, 224, 366, 384, 423
BssNAI GTATAC 1 cut(s) 354
Bst1107I GTATAC 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 332, 410
BstFNI CGCG 1 cut(s) 233
BstKTI GATC 6 cut(s) 120, 207, 227, 369, 387, 426
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 6 cut(s) 117, 204, 224, 366, 384, 423
BstUI CGCG 1 cut(s) 233
BstX2I RGATCY 2 cut(s) 204, 224
BstYI RGATCY 2 cut(s) 204, 224
BstZ17I GTATAC 1 cut(s) 354
BsuI GTATCC 1 cut(s) 158
BtgZI GCGATG 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
BtuMI TCGCGA 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 282
CviJI RGCY 3 cut(s) 78, 364, 382
CviKI_1 RGCY 3 cut(s) 78, 364, 382
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 2 cut(s) 332, 410
DpnI GATC 6 cut(s) 119, 206, 226, 368, 386, 425
DpnII GATC 6 cut(s) 117, 204, 224, 366, 384, 423
Eco32I GATATC 1 cut(s) 316
EcoRV GATATC 1 cut(s) 316
FaeI CATG 1 cut(s) 285
FaiI YATR 7 cut(s) 10, 20, 54, 249, 283, 354, 399
FatI CATG 1 cut(s) 281
FbaI TGATCA 1 cut(s) 423
FblI GTMKAC 1 cut(s) 353
FspBI CTAG 1 cut(s) 126
Hin1II CATG 1 cut(s) 285
HindIII AAGCTT 1 cut(s) 76
HinfI GANTC 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 3 cut(s) 164, 277, 411
Hpy188III TCNNGA 4 cut(s) 208, 232, 305, 427
Hpy8I GTNNAC 1 cut(s) 354
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 280
HpyCH4V TGCA 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 332, 410
Hsp92II CATG 1 cut(s) 285
Ksp22I TGATCA 1 cut(s) 423
Kzo9I GATC 6 cut(s) 117, 204, 224, 366, 384, 423
LpnPI CCDG 2 cut(s) 295, 346
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 84, 146, 194
MalI GATC 6 cut(s) 119, 206, 226, 368, 386, 425
MboI GATC 6 cut(s) 117, 204, 224, 366, 384, 423
MboII GAAGA 1 cut(s) 190
MflI RGATCY 2 cut(s) 204, 224
MluCI AATT 4 cut(s) 130, 243, 265, 430
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 1 cut(s) 405
MseI TTAA 2 cut(s) 216, 270
MslI CAYNNNNRTG 1 cut(s) 32
MvnI CGCG 1 cut(s) 233
NdeII GATC 6 cut(s) 117, 204, 224, 366, 384, 423
NlaIII CATG 1 cut(s) 285
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 146
NruI TCGCGA 1 cut(s) 233
PfeI GAWTC 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 226
PsuI RGATCY 2 cut(s) 204, 224
RruI TCGCGA 1 cut(s) 233
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 2 cut(s) 216, 270
Sau3AI GATC 6 cut(s) 117, 204, 224, 366, 384, 423
SetI ASST 5 cut(s) 80, 116, 127, 291, 333
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 2 cut(s) 208, 344
SmoI CTYRAG 2 cut(s) 208, 344
Sse9I AATT 4 cut(s) 130, 243, 265, 430
SsiI CCGC 1 cut(s) 82
SspI AATATT 1 cut(s) 395
SspMI CTAG 1 cut(s) 126
TaqI TCGA 1 cut(s) 403
TasI AATT 4 cut(s) 130, 243, 265, 430
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 2 cut(s) 216, 270
Tru9I TTAA 2 cut(s) 216, 270
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 270
TspGWI ACGGA 2 cut(s) 217, 359
TspRI CASTG 1 cut(s) 34
XapI RAATTY 2 cut(s) 130, 243
XmiI GTMKAC 1 cut(s) 353
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.