AT2G38590

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000186
Physical Location & Seq
Forward (+)
16142897 .. 16144184
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38590.1

Sequence Viewer

Length: 1275 bp
ATGACGACGATGATCTCTAATCTTCCAAGGGTTTTGATAGAGGAGATTTTTTTTAGGGTTCCTTTGAAATCTTTGAGAGCAGTGAGATTAACTTGCAAAAGTTGGAACACTCTATCCAAAAGTAGGAGCTTTAGGAAGTTGTACATTAGTAAAAGAGCAACAAGAGAAGAGGAGTCCATGATGATCGCTATGATGAATTTCGATCTTTATTCAATGAGGGTCGTAGTTGACGACGACGTTGATCCATCTAAAGCGTTTAAAAAAAAAAGGAATAAAAAATCTATAGCGTTTAAACGTCAACCTATTTTCCTTGATGAACAAGTCAAGATATCTCAAGTTTTTCACTGTGAAGGTTTATTGTTATGCTTCTTAAAAGAAGACGATACAAGGGTTGTCGTTTGGAATCCGTATTGCGGACAAACAAGGTGGATCCAACTCAGATATTCTCACCGTCCACACAAAGACAGGTTCATTTACGCTCTAGGATACAAGGATAAGGAATCTCGTGGTAGCTTCCAATTATTGAGGTTTGTAGATTATTTCCTAGGAGCACCCAAAAATCAATATTTTTGGTATGAAATTTACGATTTTAACTCTGATTCATGGACAACTCTTGATGTCACTCCACACTGGTGTATATACTGTTGTGACCGTGGTGTTTCTCTCAACGGAAACACTTACTGGTGTGCTAAAGAAAGGAAAGCAGAAGACGATATTGTCGATCACATCATATCTTTTGATTTTACAAACGAGAGATTTGGGCCGCTTTTGCCTTTGCCGTCTAAGGTTATGGAACATGAATATGAAATTGTAACTTTATCTTATGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCAGCATTACGAAGCAGATTGGAATGAGTTTGATATATGGATTACGACTAAGATTGATGCTGAAGTGGTGTCGTGGAGCATGTTCTTGAGAATGGATACGGGACCTAGGATAGAGGTTCCACATATATGTGAAGGTTTCTTCATTGATGAGGAGAAGAAAGTCGCCATGGGTTTTGAAGAAGACTTCGATCGCAAAACATTTATCATCATTGGAGAAGCTGGATACGTAAGAAAATTGGATATCAAAGCACATGTAGACAGAAAATGTCGGCCAACTGTGTGTTCTTATGTTCCAAGTTTGGTCCAAATCAAGAAACCTGCACGAGGCAAAAGGAAAAGACAAAGCAGCTTAGAAAAGCGTCTATTTGATCAAAACATGTTGAGACTTGAAGCATTTAAAAAGCTAGGCGGCTACTTCTAG

Protein Analysis

424

Amino Acids

50.35

Weight (kDa)

8.91

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 46 2.9e-09 F-box domain
F-box-like PF12937 5 - 49 5.9e-06 F-box-like
FBA_1 PF07734 60 - 388 6e-109 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 716
Acc36I ACCTGC 1 cut(s) 1180
AccI GTMKAC 1 cut(s) 1110
AciI CCGC 3 cut(s) 414, 764, 1263
AclWI GGATC 3 cut(s) 236, 424, 437
AcoI YGGCCR 1 cut(s) 1124
AcsI RAATTY 2 cut(s) 196, 579
AcuI CTGAAG 1 cut(s) 936
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 3 cut(s) 123, 413, 1178
AflIII ACRYGT 2 cut(s) 1105, 1230
AgsI TTSAA 4 cut(s) 67, 213, 1031, 1244
AjuI GAANNNNNNNTTGG 2 cut(s) 1120, 1152
AleI CACNNNNGTG 1 cut(s) 631
AloI GAACNNNNNNTCC 2 cut(s) 98, 130
AluBI AGCT 7 cut(s) 129, 513, 841, 848, 1073, 1203, 1258
AluI AGCT 7 cut(s) 129, 513, 841, 848, 1073, 1203, 1258
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 1 cut(s) 1231
AlwI GGATC 3 cut(s) 236, 424, 437
AoxI GGCC 2 cut(s) 761, 1124
ApeKI GCWGC 2 cut(s) 845, 1200
ApoI RAATTY 2 cut(s) 196, 579
AspA2I CCTAGG 2 cut(s) 544, 959
AspS9I GGNCC 3 cut(s) 761, 956, 1156
AsuHPI GGTGA 1 cut(s) 440
AvaII GGWCC 2 cut(s) 956, 1156
AvrII CCTAGG 2 cut(s) 544, 959
BaeI ACNNNNGTAYC 2 cut(s) 375, 408
BamHI GGATCC 1 cut(s) 429
BauI CACGAG 2 cut(s) 504, 1176
BbsI GAAGAC 3 cut(s) 384, 714, 1041
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 2 cut(s) 857, 1212
BccI CCATC 1 cut(s) 253
BceAI ACGGC 1 cut(s) 763
BciVI GTATCC 3 cut(s) 479, 943, 1070
BclI TGATCA 1 cut(s) 1222
BcoDI GTCTC 1 cut(s) 1231
BfaI CTAG 5 cut(s) 482, 545, 960, 1259, 1273
BfmI CTRYAG 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 1180
BfuI GTATCC 3 cut(s) 479, 943, 1070
BisI GCNGC 4 cut(s) 764, 846, 1201, 1264
BlnI CCTAGG 2 cut(s) 544, 959
BlsI GCNGC 4 cut(s) 765, 847, 1202, 1265
Bme18I GGWCC 2 cut(s) 956, 1156
BmgT120I GGNCC 3 cut(s) 761, 956, 1156
BmiI GGNNCC 4 cut(s) 60, 431, 957, 972
BmsI GCATC 1 cut(s) 901
BpiI GAAGAC 3 cut(s) 384, 714, 1041
BpuEI CTTGAG 2 cut(s) 318, 961
BsaAI YACGTR 1 cut(s) 1081
BsaJI CCNNGG 5 cut(s) 26, 544, 652, 959, 1020
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 413, 1178
Bse1I ACTGG 2 cut(s) 635, 686
BseDI CCNNGG 5 cut(s) 26, 544, 652, 959, 1020
BseLI CCNNNNNNNGG 3 cut(s) 123, 413, 1178
BseMII CTCAG 1 cut(s) 451
BseNI ACTGG 2 cut(s) 635, 686
BseRI GAGGAG 3 cut(s) 56, 185, 1019
BseXI GCAGC 2 cut(s) 857, 1212
BsgI GTGCAG 1 cut(s) 1158
Bsh1285I CGRYCG 1 cut(s) 1045
BshFI GGCC 2 cut(s) 763, 1126
BsiEI CGRYCG 1 cut(s) 1045
BsiHKAI GWGCWC 1 cut(s) 553
BslFI GGGAC 1 cut(s) 969
BslI CCNNNNNNNGG 3 cut(s) 123, 413, 1178
BsmAI GTCTC 1 cut(s) 1231
BsmFI GGGAC 1 cut(s) 969
BsnI GGCC 2 cut(s) 763, 1126
Bsp1286I GDGCHC 1 cut(s) 553
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 8 cut(s) 12, 183, 202, 241, 429, 721, 1042, 1222
Bsp19I CCATGG 1 cut(s) 1020
BspACI CCGC 3 cut(s) 414, 764, 1263
BspANI GGCC 2 cut(s) 763, 1126
BspCNI CTCAG 1 cut(s) 450
BspLI GGNNCC 4 cut(s) 60, 431, 957, 972
BspMI ACCTGC 1 cut(s) 1180
BspPI GGATC 3 cut(s) 236, 424, 437
BsrGI TGTACA 1 cut(s) 141
BsrI ACTGG 2 cut(s) 635, 686
BssECI CCNNGG 5 cut(s) 26, 544, 652, 959, 1020
BssMI GATC 8 cut(s) 12, 183, 202, 241, 429, 721, 1042, 1222
BssSI CACGAG 2 cut(s) 504, 1176
BssT1I CCWWGG 4 cut(s) 26, 544, 959, 1020
Bst2BI CACGAG 2 cut(s) 504, 1176
Bst4CI ACNGT 5 cut(s) 347, 452, 644, 653, 1132
Bst6I CTCTTC 2 cut(s) 162, 828
BstAUI TGTACA 1 cut(s) 141
BstBAI YACGTR 1 cut(s) 1081
BstC8I GCNNGC 1 cut(s) 843
BstDEI CTNAG 4 cut(s) 437, 783, 903, 1204
BstDSI CCRYGG 2 cut(s) 652, 1020
BstENI CCTNNNNNAGG 1 cut(s) 1176
BstKTI GATC 8 cut(s) 15, 186, 205, 244, 432, 724, 1045, 1225
BstMAI GTCTC 1 cut(s) 1231
BstMBI GATC 8 cut(s) 12, 183, 202, 241, 429, 721, 1042, 1222
BstMCI CGRYCG 1 cut(s) 1045
BstMWI GCNNNNNNNGC 1 cut(s) 769
BstNSI RCATGY 3 cut(s) 937, 1109, 1234
BstSFI CTRYAG 1 cut(s) 282
BstSNI TACGTA 1 cut(s) 1081
BstV1I GCAGC 2 cut(s) 857, 1212
BstV2I GAAGAC 3 cut(s) 384, 714, 1041
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
BsuI GTATCC 3 cut(s) 479, 943, 1070
BsuRI GGCC 2 cut(s) 763, 1126
BtgI CCRYGG 2 cut(s) 652, 1020
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 3 cut(s) 87, 343, 628
BveI ACCTGC 1 cut(s) 1180
Cac8I GCNNGC 1 cut(s) 843
Cfr13I GGNCC 3 cut(s) 761, 956, 1156
CseI GACGC 1 cut(s) 1202
Csp6I GTAC 1 cut(s) 142
CspCI CAANNNNNGTGG 2 cut(s) 407, 442
CviAII CATG 7 cut(s) 178, 603, 797, 934, 1021, 1106, 1231
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 4 cut(s) 437, 783, 903, 1204
DpnI GATC 8 cut(s) 14, 185, 204, 243, 431, 723, 1044, 1224
DpnII GATC 8 cut(s) 12, 183, 202, 241, 429, 721, 1042, 1222
DraI TTTAAA 3 cut(s) 259, 292, 1252
DrdI GACNNNNNNGTC 1 cut(s) 716
DseDI GACNNNNNNGTC 1 cut(s) 716
EaeI YGGCCR 1 cut(s) 1124
Eam1104I CTCTTC 2 cut(s) 162, 828
EarI CTCTTC 2 cut(s) 162, 828
Eco105I TACGTA 1 cut(s) 1081
Eco130I CCWWGG 4 cut(s) 26, 544, 959, 1020
Eco32I GATATC 2 cut(s) 330, 1096
Eco47I GGWCC 2 cut(s) 956, 1156
Eco57I CTGAAG 1 cut(s) 936
EcoNI CCTNNNNNAGG 1 cut(s) 1176
EcoO109I RGGNCCY 1 cut(s) 956
EcoRV GATATC 2 cut(s) 330, 1096
EcoT14I CCWWGG 4 cut(s) 26, 544, 959, 1020
ErhI CCWWGG 4 cut(s) 26, 544, 959, 1020
FaeI CATG 7 cut(s) 181, 606, 800, 937, 1024, 1109, 1234
FalI AAGNNNNNCTT 2 cut(s) 825, 857
FaqI GGGAC 1 cut(s) 969
FatI CATG 7 cut(s) 177, 602, 796, 933, 1020, 1105, 1230
FbaI TGATCA 1 cut(s) 1222
FblI GTMKAC 1 cut(s) 1110
Fnu4HI GCNGC 4 cut(s) 764, 846, 1201, 1264
Fsp4HI GCNGC 4 cut(s) 764, 846, 1201, 1264
FspBI CTAG 5 cut(s) 482, 545, 960, 1259, 1273
GluI GCNGC 4 cut(s) 764, 846, 1201, 1264
HaeIII GGCC 2 cut(s) 763, 1126
HgaI GACGC 1 cut(s) 1202
Hin1II CATG 7 cut(s) 181, 606, 800, 937, 1024, 1109, 1234
HincII GTYRAC 2 cut(s) 229, 299
HindII GTYRAC 2 cut(s) 229, 299
HindIII AAGCTT 1 cut(s) 839
HinfI GANTC 4 cut(s) 173, 403, 500, 599
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 4 cut(s) 229, 299, 455, 1111
Hpy188I TCNGA 2 cut(s) 440, 598
Hpy188III TCNNGA 4 cut(s) 325, 614, 940, 1165
Hpy8I GTNNAC 4 cut(s) 229, 299, 455, 1111
Hpy99I CGWCG 3 cut(s) 10, 236, 239
HpyAV CCTTC 2 cut(s) 344, 980
HpyCH4III ACNGT 5 cut(s) 347, 452, 644, 653, 1132
HpyCH4IV ACGT 3 cut(s) 237, 295, 1080
HpyCH4V TGCA 3 cut(s) 96, 845, 1175
HpyF10VI GCNNNNNNNGC 1 cut(s) 769
HpyF3I CTNAG 4 cut(s) 437, 783, 903, 1204
HpySE526I ACGT 3 cut(s) 237, 295, 1080
Hsp92II CATG 7 cut(s) 181, 606, 800, 937, 1024, 1109, 1234
Ksp22I TGATCA 1 cut(s) 1222
Kzo9I GATC 8 cut(s) 12, 183, 202, 241, 429, 721, 1042, 1222
LmnI GCTCC 3 cut(s) 126, 548, 930
LpnPI CCDG 5 cut(s) 451, 616, 667, 1059, 1185
Lsp1109I GCAGC 2 cut(s) 857, 1212
LweI GCATC 1 cut(s) 901
MaeI CTAG 5 cut(s) 482, 545, 960, 1259, 1273
MaeII ACGT 3 cut(s) 237, 295, 1080
MaeIII GTNAC 3 cut(s) 619, 647, 811
MalI GATC 8 cut(s) 14, 185, 204, 243, 431, 723, 1044, 1224
MboI GATC 8 cut(s) 12, 183, 202, 241, 429, 721, 1042, 1222
MboII GAAGA 9 cut(s) 14, 179, 389, 719, 845, 985, 1021, 1043, 1046
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 1 cut(s) 553
MluCI AATT 5 cut(s) 196, 518, 579, 807, 1088
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 2 cut(s) 83, 457
MnlI CCTC 7 cut(s) 34, 163, 210, 519, 961, 997, 1172
MseI TTAA 7 cut(s) 89, 258, 291, 371, 591, 828, 1251
MslI CAYNNNNRTG 4 cut(s) 631, 801, 979, 981
MssI GTTTAAAC 1 cut(s) 292
MwoI GCNNNNNNNGC 1 cut(s) 769
NcoI CCATGG 1 cut(s) 1020
NdeII GATC 8 cut(s) 12, 183, 202, 241, 429, 721, 1042, 1222
NlaIII CATG 7 cut(s) 181, 606, 800, 937, 1024, 1109, 1234
NlaIV GGNNCC 4 cut(s) 60, 431, 957, 972
NmuCI GTSAC 2 cut(s) 619, 647
NspI RCATGY 3 cut(s) 937, 1109, 1234
OliI CACNNNNGTG 1 cut(s) 631
PciI ACATGT 2 cut(s) 1105, 1230
PcsI WCGNNNNNNNCGW 2 cut(s) 228, 717
PfeI GAWTC 3 cut(s) 403, 500, 599
PkrI GCNGC 4 cut(s) 765, 847, 1202, 1265
Ple19I CGATCG 1 cut(s) 1045
PleI GAGTC 1 cut(s) 181
PmeI GTTTAAAC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 1081
PpuMI RGGWCCY 1 cut(s) 956
PscI ACATGT 2 cut(s) 1105, 1230
Psp5II RGGWCCY 1 cut(s) 956
PspN4I GGNNCC 4 cut(s) 60, 431, 957, 972
PspPI GGNCC 3 cut(s) 761, 956, 1156
PspPPI RGGWCCY 1 cut(s) 956
PsuI RGATCY 1 cut(s) 429
PvuI CGATCG 1 cut(s) 1045
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 4 cut(s) 631, 801, 979, 981
SaqAI TTAA 7 cut(s) 89, 258, 291, 371, 591, 828, 1251
SatI GCNGC 4 cut(s) 764, 846, 1201, 1264
Sau3AI GATC 8 cut(s) 12, 183, 202, 241, 429, 721, 1042, 1222
Sau96I GGNCC 3 cut(s) 761, 956, 1156
SchI GAGTC 1 cut(s) 182
SduI GDGCHC 1 cut(s) 553
SfaNI GCATC 1 cut(s) 901
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 2 cut(s) 956, 1156
SmiMI CAYNNNNRTG 4 cut(s) 631, 801, 979, 981
SmlI CTYRAG 2 cut(s) 333, 940
SmoI CTYRAG 2 cut(s) 333, 940
SnaBI TACGTA 1 cut(s) 1081
Sse9I AATT 5 cut(s) 196, 518, 579, 807, 1088
SsiI CCGC 3 cut(s) 414, 764, 1263
SspI AATATT 1 cut(s) 566
SspMI CTAG 5 cut(s) 482, 545, 960, 1259, 1273
StyI CCWWGG 4 cut(s) 26, 544, 959, 1020
TaaI ACNGT 5 cut(s) 347, 452, 644, 653, 1132
TaiI ACGT 3 cut(s) 240, 298, 1083
TaqI TCGA 3 cut(s) 201, 720, 1041
TasI AATT 5 cut(s) 196, 518, 579, 807, 1088
TatI WGTACW 1 cut(s) 141
TauI GCSGC 2 cut(s) 766, 1266
TfiI GAWTC 3 cut(s) 403, 500, 599
Tru1I TTAA 7 cut(s) 89, 258, 291, 371, 591, 828, 1251
Tru9I TTAA 7 cut(s) 89, 258, 291, 371, 591, 828, 1251
TscAI CASTG 3 cut(s) 87, 350, 635
TseFI GTSAC 2 cut(s) 619, 647
TseI GCWGC 2 cut(s) 845, 1200
Tsp45I GTSAC 2 cut(s) 619, 647
TspDTI ATGAA 8 cut(s) 209, 330, 460, 591, 591, 813, 819, 985
TspGWI ACGGA 2 cut(s) 396, 684
TspRI CASTG 3 cut(s) 87, 350, 635
VpaK11BI GGWCC 2 cut(s) 956, 1156
XagI CCTNNNNNAGG 1 cut(s) 1176
XapI RAATTY 2 cut(s) 196, 579
XceI RCATGY 3 cut(s) 937, 1109, 1234
XmaJI CCTAGG 2 cut(s) 544, 959
XmiI GTMKAC 1 cut(s) 1110
XspI CTAG 5 cut(s) 482, 545, 960, 1259, 1273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.