AT3G20400

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
7114347 .. 7114766
420 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20400.1

Sequence Viewer

Length: 312 bp
ATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACATGTTGTCGTGGGGCAGCAAGGTCTTCTTATCAGTGGATATGACACCACTCACTGGCAACGATTTTATGTTTTCGTTTATGGCTACAAGTTTCTTCATTGATGAAGAGAAGAAAATCGCTGTGGTTTTTAATCAAAGCAAAGACAGGAAGCACAACACAGCTTTCATCATTGGACAGGATGGATCCTTGAAAGAAGTGGATCTTGGAGAAGTTCGAAACAGAGATCTCAAACCACTTGTGTCCTCTTATGTTCCAAGTTCAATGCAACTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

103

Amino Acids

11.74

Weight (kDa)

5.11

Isoelectric Point (pI)

22.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 1 - 101 3.2e-26 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 89
AclWI GGATC 3 cut(s) 213, 226, 243
AfiI CCNNNNNNNGG 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 3 cut(s) 226, 297, 308
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
AlwI GGATC 3 cut(s) 213, 226, 243
ApeKI GCWGC 1 cut(s) 51
AsuII TTCGAA 1 cut(s) 250
BamHI GGATCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 63
BccI CCATC 1 cut(s) 209
BglII AGATCT 2 cut(s) 6, 259
BisI GCNGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 52
Bpu14I TTCGAA 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 89
Bsp119I TTCGAA 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 4 cut(s) 6, 218, 235, 259
BspLI GGNNCC 1 cut(s) 220
BspPI GGATC 3 cut(s) 213, 226, 243
BspT104I TTCGAA 1 cut(s) 250
BsrI ACTGG 1 cut(s) 94
BssMI GATC 4 cut(s) 6, 218, 235, 259
Bst6I CTCTTC 1 cut(s) 135
BstBI TTCGAA 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 4 cut(s) 9, 221, 238, 262
BstMBI GATC 4 cut(s) 6, 218, 235, 259
BstNSI RCATGY 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 63
BstV2I GAAGAC 1 cut(s) 52
BstX2I RGATCY 4 cut(s) 6, 218, 235, 259
BstYI RGATCY 4 cut(s) 6, 218, 235, 259
BtsCI GGATG 1 cut(s) 220
BtsIMutI CAGTG 2 cut(s) 75, 87
CviAII CATG 1 cut(s) 37
CviJI RGCY 3 cut(s) 31, 119, 197
CviKI_1 RGCY 3 cut(s) 31, 119, 197
DdeI CTNAG 1 cut(s) 21
DpnI GATC 4 cut(s) 8, 220, 237, 261
DpnII GATC 4 cut(s) 6, 218, 235, 259
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 33
FaeI CATG 1 cut(s) 40
FaiI YATR 5 cut(s) 38, 77, 104, 116, 285
FalI AAGNNNNNCTT 4 cut(s) 47, 79, 222, 254
FatI CATG 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 52
FokI GGATG 1 cut(s) 227
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 52
Hin1II CATG 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 301
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 1 cut(s) 40
Kzo9I GATC 4 cut(s) 6, 218, 235, 259
LpnPI CCDG 3 cut(s) 75, 166, 197
Lsp1109I GCAGC 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 13
MalI GATC 4 cut(s) 8, 220, 237, 261
MboI GATC 4 cut(s) 6, 218, 235, 259
MboII GAAGA 4 cut(s) 52, 121, 152, 157
MflI RGATCY 4 cut(s) 6, 218, 235, 259
MhlI GDGCHC 1 cut(s) 33
MnlI CCTC 1 cut(s) 289
MseI TTAA 1 cut(s) 165
NdeII GATC 4 cut(s) 6, 218, 235, 259
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 1 cut(s) 220
NspI RCATGY 1 cut(s) 40
NspV TTCGAA 1 cut(s) 250
PciI ACATGT 1 cut(s) 36
PflMI CCANNNNNTGG 1 cut(s) 89
PkrI GCNGC 1 cut(s) 53
PscI ACATGT 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 220
PsuI RGATCY 4 cut(s) 6, 218, 235, 259
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 52
Sau3AI GATC 4 cut(s) 6, 218, 235, 259
SduI GDGCHC 1 cut(s) 33
SetI ASST 2 cut(s) 60, 199
SfuI TTCGAA 1 cut(s) 250
TaqI TCGA 1 cut(s) 250
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 2 cut(s) 75, 94
TseI GCWGC 1 cut(s) 51
TspDTI ATGAA 3 cut(s) 121, 153, 190
TspRI CASTG 2 cut(s) 75, 94
Van91I CCANNNNNTGG 1 cut(s) 89
XceI RCATGY 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.