AT3G17270

endonuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
5902479 .. 5902886
408 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17270.1

Sequence Viewer

Length: 408 bp
ATGATGACAACGATTCCCAATCTTCCAGACGAATTGGAATCGGAAATACTCTCTAGGGTTCCGGCGAAGTCTCTAGCGAAATGGAAGACTATTTGCAAACGATGGTACGCTTTGTTCAGAGATCCGAGATTCGTGAAGAAGAACTTGTGTAAATCAGCGAGGGAAGTGATGTTACTGATGAATGATAGGGTTCACTCAATTAGCGTCAATCGCCATGGAATTGACGACAGATTTGAACCATCTATGGAGTTTTCAGGTAAACTCAGGAGTCTAATTGATTCGAAAGACGTCAAAGTATCAAAGGAGGCAAACTTGGCAAGAAGCCTTAACACAATGTACGCGAAACTCAAATCTAACCGCATATCCAAATTATGTGGTGGAGTAATGAACCACTTCAACATACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210
Pfam Domains
Protein Families
PPR PPR_2 PPR_3 RRM_1

Protein Analysis

135

Amino Acids

15.61

Weight (kDa)

10.02

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 46 3.4e-07 F-box domain
F-box-like PF12937 5 - 50 2.6e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 291
AccII CGCG 1 cut(s) 341
AciI CCGC 1 cut(s) 358
AclWI GGATC 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 2 cut(s) 107, 338
AgsI TTSAA 2 cut(s) 236, 397
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 1 cut(s) 116
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
Asp700I GAANNNNTTC 1 cut(s) 392
AsuII TTCGAA 1 cut(s) 281
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbsI GAAGAC 1 cut(s) 92
BccI CCATC 2 cut(s) 96, 247
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 2 cut(s) 54, 74
BmiI GGNNCC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 92
Bpu14I TTCGAA 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 277
Bsh1236I CGCG 1 cut(s) 341
BsiSI CCGG 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 75
Bsp119I TTCGAA 1 cut(s) 281
Bsp143I GATC 1 cut(s) 121
Bsp19I CCATGG 1 cut(s) 214
BspACI CCGC 1 cut(s) 358
BspCNI CTCAG 1 cut(s) 276
BspFNI CGCG 1 cut(s) 341
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 1 cut(s) 116
BspT104I TTCGAA 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 1 cut(s) 121
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 214
BstACI GRCGYC 1 cut(s) 288
BstBI TTCGAA 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 263
BstDSI CCRYGG 1 cut(s) 214
BstFNI CGCG 1 cut(s) 341
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 2 cut(s) 210, 314
BstUI CGCG 1 cut(s) 341
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 214
CseI GACGC 1 cut(s) 193
Csp6I GTAC 2 cut(s) 106, 337
CspCI CAANNNNNGTGG 2 cut(s) 355, 390
CviAII CATG 1 cut(s) 215
CviJI RGCY 1 cut(s) 324
CviKI_1 RGCY 1 cut(s) 324
CviQI GTAC 2 cut(s) 106, 337
DdeI CTNAG 1 cut(s) 263
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 1 cut(s) 218
FaiI YATR 5 cut(s) 216, 245, 362, 373, 401
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 1 cut(s) 214
FspBI CTAG 2 cut(s) 54, 74
HapII CCGG 1 cut(s) 62
HgaI GACGC 1 cut(s) 193
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 1 cut(s) 218
HinfI GANTC 5 cut(s) 13, 38, 129, 268, 278
HpaII CCGG 1 cut(s) 62
Hpy166II GTNNAC 2 cut(s) 193, 260
Hpy188I TCNGA 3 cut(s) 43, 119, 126
Hpy188III TCNNGA 3 cut(s) 26, 133, 265
Hpy8I GTNNAC 2 cut(s) 193, 260
HpyCH4IV ACGT 2 cut(s) 288, 403
HpyCH4V TGCA 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 314
HpyF3I CTNAG 1 cut(s) 263
HpySE526I ACGT 2 cut(s) 288, 403
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 1 cut(s) 218
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 4 cut(s) 39, 75, 240, 250
MaeI CTAG 2 cut(s) 54, 74
MaeII ACGT 2 cut(s) 288, 403
MaeIII GTNAC 1 cut(s) 171
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 4 cut(s) 14, 97, 148, 151
MflI RGATCY 1 cut(s) 121
MluCI AATT 5 cut(s) 32, 198, 219, 273, 368
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 2 cut(s) 153, 298
MroXI GAANNNNTTC 1 cut(s) 392
MseI TTAA 1 cut(s) 327
MspI CCGG 1 cut(s) 62
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 2 cut(s) 210, 314
NcoI CCATGG 1 cut(s) 214
NdeII GATC 1 cut(s) 121
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 60
NspV TTCGAA 1 cut(s) 281
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 4 cut(s) 13, 38, 129, 278
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 60
PsrI GAACNNNNNNTAC 2 cut(s) 98, 130
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 2 cut(s) 107, 338
RsaNI GTAC 2 cut(s) 106, 337
SaqAI TTAA 1 cut(s) 327
Sau3AI GATC 1 cut(s) 121
SchI GAGTC 1 cut(s) 277
SetI ASST 3 cut(s) 259, 291, 406
SfuI TTCGAA 1 cut(s) 281
Sse9I AATT 5 cut(s) 32, 198, 219, 273, 368
SsiI CCGC 1 cut(s) 358
SspMI CTAG 2 cut(s) 54, 74
StyI CCWWGG 1 cut(s) 214
TaiI ACGT 2 cut(s) 291, 406
TaqI TCGA 1 cut(s) 281
TasI AATT 5 cut(s) 32, 198, 219, 273, 368
TfiI GAWTC 4 cut(s) 13, 38, 129, 278
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TspDTI ATGAA 2 cut(s) 194, 401
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 2 cut(s) 54, 74
ZraI GACGTC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.