AT3G13820

ABC transporter E family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
4549616 .. 4551011
1396 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13820.1

Sequence Viewer

Length: 1248 bp
ATGACGACGATGTCTAATCTCCCTGCAGAGGTTTTGGAAGAGATTCTCTCAAGGACTCCGGTTACATCTCTGAGGACAATGCGATCTACTTGCAAAAAGTGGAACAATCTCTCAAAAAAGAAGATTATTCCTGAAGCTGCAAGGAAGCAGCAAGGTTTAATGTTGATTAAAAAGAAAATCTGTTCCTTGAGTTTCAGTCTCCATGAAATTCACAAGGATGACTACGTCGTTCCGTGCATTAATCAGGTCGATATTCCTCGCAACATAGAAGTAGAGAAAATCTTTCACTGTGACGGCATATTGTTATGCGTCATAGAGGACAACTGTAGTCTTTTGGTATGGAATCCATATCTAGGGCAAACGAGGAGGATCGAAGTAAGTTCCGATGCCGACATGAATGATAGGTATGCTCTTGGTTACGACAACAACAACAGTAGCCACAAAATCTTGAGGATTAAGAAAGATTTTAAGAACAGCGACGGTTTAGGATACGAAATCTACAGATTCGCGTCGAATTCATGGAGTTTGCTTGATGAGGAAGTGATGAAACCAGAGTGGGATGTATGGTCTGTTCAACGAAGCTCCGTGTCTTTGAAGGGAAATACGTATTTCTTACTTCAAGGGAATGATTATGATGACCAAGAGGACGAAGAGGAGGAAGATGACGAAGAGTACGAAGATGACGACGACGTCCTGCCGAAAGATAATTTTTTGCTCTGTTTTGATTATACAACAGAGAGATTTGGTCCGCGTCTGCTTCTACCGTTTAACCCTCATGTTGAAGAGACTGTGGCTTTATCTTGTATAGGAGAAGAGCGGCTCGTAATGCTATATCAAAGCTTCAAGACATATAAGGGAATAGAGATTTGGGTTACAGACAAGATTGATCCGAAAGCGGTGTCGTGGAGCAAGTTTCTGAAAGTGGATATCACACCACTCACTGGTTTTCCGGTTGACTTTTACGCTGATAGTTTCGTCATTGACGAGGAGAAGAAAGTTGCTGCGGTTTTCGATATACATTGTAGCTACCAAAAAGCTCACATCATTGGAGAAGATGGATACCTGAAATGTGTGAATATGGGAAGAGCTTCGGATGTTGGAAATGGTCAGCCACTTGTGTTCTCTTCTTATGTTCCAAGTTTAGTGAAAGTTCCTGTCAAGCAACCAAAGGGTAAAAGAAAAGGTAGATCTTCTGAAACCAAAAGCAACAAGAACAAAAAAGGAAGAAAGATTAAGATTATTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran F-box FBA_1 Fer4 RLI

Protein Analysis

415

Amino Acids

47.62

Weight (kDa)

5.59

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 42 3.1e-09 F-box domain
F-box-like PF12937 4 - 38 3.4e-06 F-box-like
FBA_1 PF07734 52 - 384 2.7e-99 F-box associated beta propeller domain
FBA_3 PF08268 54 - 210 5.3e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 10, 689
AatII GACGTC 1 cut(s) 693
AccB7I CCANNNNNTGG 1 cut(s) 941
AccBSI CCGCTC 1 cut(s) 817
AccII CGCG 2 cut(s) 509, 751
AciI CCGC 4 cut(s) 749, 817, 896, 1004
AclWI GGATC 2 cut(s) 377, 881
AcsI RAATTY 2 cut(s) 207, 514
AcuI CTGAAG 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 690
AfaI GTAC 1 cut(s) 674
AfiI CCNNNNNNNGG 3 cut(s) 28, 353, 941
AgsI TTSAA 5 cut(s) 575, 595, 620, 782, 844
AjuI GAANNNNNNNTTGG 2 cut(s) 850, 882
AluBI AGCT 6 cut(s) 137, 582, 840, 1026, 1037, 1088
AluI AGCT 6 cut(s) 137, 582, 840, 1026, 1037, 1088
Alw26I GTCTC 2 cut(s) 203, 779
AlwI GGATC 2 cut(s) 377, 881
ApeKI GCWGC 3 cut(s) 137, 148, 1001
ApoI RAATTY 2 cut(s) 207, 514
ArsI GACNNNNNNTTYG 2 cut(s) 884, 916
AseI ATTAAT 1 cut(s) 240
Asp700I GAANNNNTTC 2 cut(s) 42, 1087
AspS9I GGNCC 1 cut(s) 746
AvaII GGWCC 1 cut(s) 746
BbvI GCAGC 3 cut(s) 124, 160, 988
BccI CCATC 1 cut(s) 1049
BceAI ACGGC 1 cut(s) 310
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BciVI GTATCC 2 cut(s) 482, 1052
BcoDI GTCTC 2 cut(s) 203, 779
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 3 cut(s) 24, 325, 499
BfuI GTATCC 2 cut(s) 482, 1052
BglII AGATCT 1 cut(s) 1187
BisI GCNGC 4 cut(s) 138, 149, 818, 1002
BlsI GCNGC 4 cut(s) 139, 150, 819, 1003
Bme18I GGWCC 1 cut(s) 746
BmgT120I GGNCC 1 cut(s) 746
BmsI GCATC 1 cut(s) 376
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpuEI CTTGAG 3 cut(s) 34, 208, 469
BsaAI YACGTR 1 cut(s) 606
BsaHI GRCGYC 1 cut(s) 690
BsaWI WCCGGW 2 cut(s) 58, 949
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 353, 941
Bse1I ACTGG 1 cut(s) 946
BseGI GGATG 3 cut(s) 223, 565, 1099
BseLI CCNNNNNNNGG 3 cut(s) 28, 353, 941
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 946
BseRI GAGGAG 3 cut(s) 379, 668, 1001
BseXI GCAGC 3 cut(s) 124, 160, 988
Bsh1236I CGCG 2 cut(s) 509, 751
BsiSI CCGG 2 cut(s) 59, 950
BslI CCNNNNNNNGG 3 cut(s) 28, 353, 941
BsmAI GTCTC 2 cut(s) 203, 779
Bsp143I GATC 4 cut(s) 83, 369, 886, 1187
BspACI CCGC 4 cut(s) 749, 817, 896, 1004
BspCNI CTCAG 1 cut(s) 63
BspFNI CGCG 2 cut(s) 509, 751
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 2 cut(s) 377, 881
BspQI GCTCTTC 2 cut(s) 807, 1078
BsrBI CCGCTC 1 cut(s) 817
BsrI ACTGG 1 cut(s) 946
BssMI GATC 4 cut(s) 83, 369, 886, 1187
BssNI GRCGYC 1 cut(s) 690
Bst4CI ACNGT 6 cut(s) 290, 326, 434, 482, 765, 790
Bst6I CTCTTC 7 cut(s) 33, 645, 663, 777, 807, 1078, 1129
BstACI GRCGYC 1 cut(s) 690
BstBAI YACGTR 1 cut(s) 606
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 3 cut(s) 223, 565, 1099
BstFNI CGCG 2 cut(s) 509, 751
BstKTI GATC 4 cut(s) 86, 372, 889, 1190
BstMAI GTCTC 2 cut(s) 203, 779
BstMBI GATC 4 cut(s) 83, 369, 886, 1187
BstMWI GCNNNNNNNGC 1 cut(s) 826
BstSFI CTRYAG 3 cut(s) 24, 325, 499
BstSNI TACGTA 1 cut(s) 606
BstUI CGCG 2 cut(s) 509, 751
BstV1I GCAGC 3 cut(s) 124, 160, 988
BstX2I RGATCY 1 cut(s) 1187
BstYI RGATCY 1 cut(s) 1187
BsuI GTATCC 2 cut(s) 482, 1052
BtsCI GGATG 3 cut(s) 223, 565, 1099
BtsIMutI CAGTG 2 cut(s) 286, 939
Cfr13I GGNCC 1 cut(s) 746
CseI GACGC 3 cut(s) 298, 498, 740
Csp6I GTAC 1 cut(s) 673
CviAII CATG 4 cut(s) 203, 394, 519, 776
CviQI GTAC 1 cut(s) 673
DdeI CTNAG 1 cut(s) 71
DpnI GATC 4 cut(s) 85, 371, 888, 1189
DpnII GATC 4 cut(s) 83, 369, 886, 1187
DrdI GACNNNNNNGTC 2 cut(s) 10, 689
DseDI GACNNNNNNGTC 2 cut(s) 10, 689
Eam1104I CTCTTC 7 cut(s) 33, 645, 663, 777, 807, 1078, 1129
EarI CTCTTC 7 cut(s) 33, 645, 663, 777, 807, 1078, 1129
Eco105I TACGTA 1 cut(s) 606
Eco32I GATATC 1 cut(s) 928
Eco47I GGWCC 1 cut(s) 746
Eco57I CTGAAG 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 514
EcoRV GATATC 1 cut(s) 928
FaeI CATG 4 cut(s) 206, 397, 522, 779
FatI CATG 4 cut(s) 202, 393, 518, 775
Fnu4HI GCNGC 4 cut(s) 138, 149, 818, 1002
FokI GGATG 3 cut(s) 230, 572, 1106
Fsp4HI GCNGC 4 cut(s) 138, 149, 818, 1002
FspBI CTAG 1 cut(s) 353
GluI GCNGC 4 cut(s) 138, 149, 818, 1002
HapII CCGG 2 cut(s) 59, 950
HgaI GACGC 3 cut(s) 298, 498, 740
Hin1I GRCGYC 1 cut(s) 690
Hin1II CATG 4 cut(s) 206, 397, 522, 779
HincII GTYRAC 1 cut(s) 955
HindII GTYRAC 1 cut(s) 955
HindIII AAGCTT 1 cut(s) 838
HinfI GANTC 4 cut(s) 43, 55, 343, 504
HpaII CCGG 2 cut(s) 59, 950
Hpy166II GTNNAC 1 cut(s) 955
Hpy188I TCNGA 6 cut(s) 72, 385, 891, 918, 1093, 1195
Hpy188III TCNNGA 3 cut(s) 131, 448, 844
Hpy8I GTNNAC 1 cut(s) 955
Hpy99I CGWCG 6 cut(s) 10, 230, 482, 514, 689, 692
HpyAV CCTTC 1 cut(s) 589
HpyCH4III ACNGT 6 cut(s) 290, 326, 434, 482, 765, 790
HpyCH4IV ACGT 3 cut(s) 225, 605, 690
HpyCH4V TGCA 4 cut(s) 26, 93, 140, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 826
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 3 cut(s) 225, 605, 690
Hsp92I GRCGYC 1 cut(s) 690
Hsp92II CATG 4 cut(s) 206, 397, 522, 779
Kzo9I GATC 4 cut(s) 83, 369, 886, 1187
LguI GCTCTTC 2 cut(s) 807, 1078
LmnI GCTCC 2 cut(s) 587, 906
Lsp1109I GCAGC 3 cut(s) 124, 160, 988
LweI GCATC 1 cut(s) 376
MaeI CTAG 1 cut(s) 353
MaeII ACGT 3 cut(s) 225, 605, 690
MaeIII GTNAC 4 cut(s) 61, 290, 416, 871
MalI GATC 4 cut(s) 85, 371, 888, 1189
MbiI CCGCTC 1 cut(s) 817
MboI GATC 4 cut(s) 83, 369, 886, 1187
MflI RGATCY 1 cut(s) 1187
MluCI AATT 3 cut(s) 207, 514, 706
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 1078
MroXI GAANNNNTTC 2 cut(s) 42, 1087
MseI TTAA 8 cut(s) 158, 168, 240, 456, 468, 768, 1233, 1246
MslI CAYNNNNRTG 1 cut(s) 216
MspI CCGG 2 cut(s) 59, 950
MvnI CGCG 2 cut(s) 509, 751
MwoI GCNNNNNNNGC 1 cut(s) 826
NdeII GATC 4 cut(s) 83, 369, 886, 1187
NlaIII CATG 4 cut(s) 206, 397, 522, 779
NmuCI GTSAC 1 cut(s) 290
PciSI GCTCTTC 2 cut(s) 807, 1078
PcsI WCGNNNNNNNCGW 3 cut(s) 672, 681, 981
PdmI GAANNNNTTC 2 cut(s) 42, 1087
PfeI GAWTC 3 cut(s) 43, 343, 504
PflFI GACNNNGTC 3 cut(s) 10, 224, 689
PflMI CCANNNNNTGG 1 cut(s) 941
PkrI GCNGC 4 cut(s) 139, 150, 819, 1003
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Ppu21I YACGTR 1 cut(s) 606
PshBI ATTAAT 1 cut(s) 240
PspPI GGNCC 1 cut(s) 746
PsrI GAACNNNNNNTAC 2 cut(s) 555, 587
PstI CTGCAG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 1187
PsyI GACNNNGTC 3 cut(s) 10, 224, 689
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
RseI CAYNNNNRTG 1 cut(s) 216
SapI GCTCTTC 2 cut(s) 807, 1078
SaqAI TTAA 8 cut(s) 158, 168, 240, 456, 468, 768, 1233, 1246
SatI GCNGC 4 cut(s) 138, 149, 818, 1002
Sau3AI GATC 4 cut(s) 83, 369, 886, 1187
Sau96I GGNCC 1 cut(s) 746
SchI GAGTC 1 cut(s) 49
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 3 cut(s) 24, 325, 499
SinI GGWCC 1 cut(s) 746
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 3 cut(s) 49, 187, 448
SmoI CTYRAG 3 cut(s) 49, 187, 448
SnaBI TACGTA 1 cut(s) 606
Sse9I AATT 3 cut(s) 207, 514, 706
SsiI CCGC 4 cut(s) 749, 817, 896, 1004
SspMI CTAG 1 cut(s) 353
TaaI ACNGT 6 cut(s) 290, 326, 434, 482, 765, 790
TaiI ACGT 3 cut(s) 228, 608, 693
TaqI TCGA 4 cut(s) 249, 372, 512, 1011
TasI AATT 3 cut(s) 207, 514, 706
TauI GCSGC 1 cut(s) 820
TfiI GAWTC 3 cut(s) 43, 343, 504
Tru1I TTAA 8 cut(s) 158, 168, 240, 456, 468, 768, 1233, 1246
Tru9I TTAA 8 cut(s) 158, 168, 240, 456, 468, 768, 1233, 1246
TscAI CASTG 2 cut(s) 293, 946
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 3 cut(s) 137, 148, 1001
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 4 cut(s) 219, 410, 507, 560
TspGWI ACGGA 2 cut(s) 222, 574
TspRI CASTG 2 cut(s) 293, 946
Tth111I GACNNNGTC 3 cut(s) 10, 224, 689
Van91I CCANNNNNTGG 1 cut(s) 941
VpaK11BI GGWCC 1 cut(s) 746
VspI ATTAAT 1 cut(s) 240
XapI RAATTY 2 cut(s) 207, 514
XmnI GAANNNNTTC 2 cut(s) 42, 1087
XspI CTAG 1 cut(s) 353
ZraI GACGTC 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.