AT3G49520

ABC transporter E family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
18359584 .. 18360750
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49520.1

Sequence Viewer

Length: 1167 bp
ATGACGACAATTTCCGATCTACCATATGATTTGGTAAAAGAGATATTTTCTTGGGTTCCATTTACATCTCTTAGAGCAGTGCGATCTACTTGTAAAACGTGGAACGCTTTATCGAAAAATCAGATCTTTGGTAAAAAATCAGTAGCAAGGAATCAGTTTCTAGAGTTAATGATTCTAGATTCTAGGGTTTGTTCCTTGAGATTCGATCTCCAAAAAATCCGTAACGAAGACGAAGAAGACTTGGTTGATCCATCTATGAAACAAATAAGCATACCTAATAATGATGATCAAGTCGAGATATCTCGAGTCTATCACTGCGATGGCTTATTGTTATGCATCCCCAAAGATAACTCGAGTCTTATGTTATGGAATCCGTATTTGGGGCAAACCAAACGGATTCGACCCAAAAACACATTCCACAGAGATGACAGCTTTGCTCTGGGATACAACAACCGTAACCACAAAATCTTGAGGTTGAACGAGGAAAACGAAAGTCATATTGATGTCTACGATTTTAGCTCTGATTCATGGAGGACGGTTCCTGATGATAATCCCTATAGGGATGAACTCATTTATCAAAGTGGCGTGTCTTTGAAGGGAAATGCTTACTTTTTCGATCGAGAGGTAACGACAGAGGCAGAAGTGGGGACAGAAGACTTGTTGATAACAGGCATTGAAGATTATTTACGCTGTTTTGATTTCACAACCGAGAGATTTGGACCGCGTTTGCCTCTTCCGTTTATCCTTCCCTCTCCTAGTTTTGAATATTTGGCTCTATCTTGGGCTAGAGATGATAAGCTCGCTGTGTTATATAGCCACTACGACACATTTGACATCATAGAGATTTGGATTTCGACTAAGATTGAGCCCAATGCGGTTTCGTGGAGCACTTTTTTGAAAGTGGATATGTCACTAATCAATGGTTTAACGGATGATTTTTTGATTAGATTTGAACCTAAAAGCTTTTTTATCGACGAGGAGAAGAAAGTCGCTGTACTTTTTGATACTAAAGTGACAGAGACCTGTCGCTACCAAATGGCTTACATCGTTGGAGATGATGGATACTTCAAATCTGTCAACATTGGAGTAATCTCGAATTCCCATTGGATAGGAGGCGAACTTGTGCGCTCTTCTTATGTTCCAAGTTTATTGCAACTGCAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran F-box FBA_1 Fer4 RLI

Protein Analysis

388

Amino Acids

45.01

Weight (kDa)

4.9

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 45 1.5e-10 F-box domain
F-box-like PF12937 4 - 40 1.9e-06 F-box-like
FBA_1 PF07734 56 - 385 1.4e-96 F-box associated beta propeller domain
FBA_3 PF08268 69 - 239 6.3e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 507
AccII CGCG 1 cut(s) 724
AciI CCGC 2 cut(s) 722, 875
AclWI GGATC 1 cut(s) 242
AcsI RAATTY 1 cut(s) 1096
AfaI GTAC 1 cut(s) 996
AfiI CCNNNNNNNGG 1 cut(s) 380
AgsI TTSAA 7 cut(s) 478, 595, 677, 764, 898, 953, 1069
AjuI GAANNNNNNNTTGG 4 cut(s) 362, 394, 398, 430
AluBI AGCT 4 cut(s) 432, 519, 799, 963
AluI AGCT 4 cut(s) 432, 519, 799, 963
Alw21I GWGCWC 1 cut(s) 890
Alw26I GTCTC 1 cut(s) 1013
AlwI GGATC 1 cut(s) 242
Ama87I CYCGRG 2 cut(s) 303, 352
ApoI RAATTY 1 cut(s) 1096
AspLEI GCGC 1 cut(s) 1128
AspS9I GGNCC 1 cut(s) 719
AvaI CYCGRG 2 cut(s) 303, 352
AvaII GGWCC 1 cut(s) 719
BaeI ACNNNNGTAYC 2 cut(s) 996, 1029
BanII GRGCYC 1 cut(s) 870
BarI GAAGNNNNNNTAC 2 cut(s) 669, 701
BbsI GAAGAC 3 cut(s) 234, 243, 660
Bbv12I GWGCWC 1 cut(s) 890
BccI CCATC 3 cut(s) 259, 314, 1052
BciVI GTATCC 2 cut(s) 437, 1055
BclI TGATCA 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 1013
BfaI CTAG 5 cut(s) 161, 176, 183, 756, 786
BfmI CTRYAG 1 cut(s) 556
BfuI GTATCC 2 cut(s) 437, 1055
BglII AGATCT 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 719
BmeT110I CYCGRG 2 cut(s) 303, 352
BmgT120I GGNCC 1 cut(s) 719
BmiI GGNNCC 2 cut(s) 57, 540
BmsI GCATC 1 cut(s) 345
BpiI GAAGAC 3 cut(s) 234, 243, 660
BpuEI CTTGAG 2 cut(s) 217, 490
BsaBI GATNNNNATC 1 cut(s) 549
BsaI GGTCTC 1 cut(s) 1013
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse8I GATNNNNATC 1 cut(s) 549
BseGI GGATG 3 cut(s) 336, 568, 937
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 1 cut(s) 380
BseRI GAGGAG 1 cut(s) 992
Bsh1236I CGCG 1 cut(s) 724
Bsh1285I CGRYCG 1 cut(s) 619
BsiEI CGRYCG 1 cut(s) 619
BsiHKAI GWGCWC 1 cut(s) 890
BsiHKCI CYCGRG 2 cut(s) 303, 352
BslFI GGGAC 1 cut(s) 661
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 1013
BsmFI GGGAC 1 cut(s) 661
Bso31I GGTCTC 1 cut(s) 1013
BsoBI CYCGRG 2 cut(s) 303, 352
Bsp1286I GDGCHC 2 cut(s) 870, 890
Bsp143I GATC 7 cut(s) 16, 83, 123, 205, 247, 286, 616
BspACI CCGC 2 cut(s) 722, 875
BspFNI CGCG 1 cut(s) 724
BspLI GGNNCC 2 cut(s) 57, 540
BspPI GGATC 1 cut(s) 242
BspQI GCTCTTC 1 cut(s) 1135
BspTNI GGTCTC 1 cut(s) 1013
BssMI GATC 7 cut(s) 16, 83, 123, 205, 247, 286, 616
Bst4CI ACNGT 2 cut(s) 455, 538
Bst6I CTCTTC 2 cut(s) 738, 1135
BstC8I GCNNGC 1 cut(s) 801
BstDEI CTNAG 2 cut(s) 71, 858
BstF5I GGATG 3 cut(s) 336, 568, 937
BstFNI CGCG 1 cut(s) 724
BstHHI GCGC 1 cut(s) 1128
BstKTI GATC 7 cut(s) 19, 86, 126, 208, 250, 289, 619
BstMAI GTCTC 1 cut(s) 1013
BstMBI GATC 7 cut(s) 16, 83, 123, 205, 247, 286, 616
BstMCI CGRYCG 1 cut(s) 619
BstSFI CTRYAG 1 cut(s) 556
BstUI CGCG 1 cut(s) 724
BstV2I GAAGAC 3 cut(s) 234, 243, 660
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuI GTATCC 2 cut(s) 437, 1055
BtgZI GCGATG 1 cut(s) 333
BtsCI GGATG 3 cut(s) 336, 568, 937
BtsI GCAGTG 2 cut(s) 84, 313
BtsIMutI CAGTG 2 cut(s) 84, 313
Cac8I GCNNGC 1 cut(s) 801
CfoI GCGC 1 cut(s) 1128
Cfr13I GGNCC 1 cut(s) 719
Csp6I GTAC 1 cut(s) 995
CviAII CATG 1 cut(s) 528
CviQI GTAC 1 cut(s) 995
DdeI CTNAG 2 cut(s) 71, 858
DpnI GATC 7 cut(s) 18, 85, 125, 207, 249, 288, 618
DpnII GATC 7 cut(s) 16, 83, 123, 205, 247, 286, 616
Eam1104I CTCTTC 2 cut(s) 738, 1135
EarI CTCTTC 2 cut(s) 738, 1135
Eco24I GRGCYC 1 cut(s) 870
Eco31I GGTCTC 1 cut(s) 1013
Eco32I GATATC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 719
Eco88I CYCGRG 2 cut(s) 303, 352
EcoRI GAATTC 1 cut(s) 1096
EcoRV GATATC 1 cut(s) 300
EcoT22I ATGCAT 1 cut(s) 338
EcoT38I GRGCYC 1 cut(s) 870
FaeI CATG 1 cut(s) 531
FaqI GGGAC 1 cut(s) 661
FatI CATG 1 cut(s) 527
FauNDI CATATG 1 cut(s) 25
FbaI TGATCA 1 cut(s) 286
FblI GTMKAC 1 cut(s) 507
FokI GGATG 3 cut(s) 323, 575, 944
FriOI GRGCYC 1 cut(s) 870
FspBI CTAG 5 cut(s) 161, 176, 183, 756, 786
GlaI GCGC 1 cut(s) 1127
HhaI GCGC 1 cut(s) 1128
Hin1II CATG 1 cut(s) 531
Hin6I GCGC 1 cut(s) 1126
HinP1I GCGC 1 cut(s) 1126
HincII GTYRAC 1 cut(s) 1078
HindII GTYRAC 1 cut(s) 1078
HindIII AAGCTT 1 cut(s) 961
HinfI GANTC 9 cut(s) 151, 172, 179, 201, 306, 355, 370, 397, 524
Hpy166II GTNNAC 2 cut(s) 508, 1078
Hpy188I TCNGA 3 cut(s) 16, 123, 523
Hpy188III TCNNGA 8 cut(s) 161, 176, 295, 303, 469, 542, 620, 1093
Hpy8I GTNNAC 2 cut(s) 508, 1078
Hpy99I CGWCG 1 cut(s) 977
HpyAV CCTTC 2 cut(s) 589, 755
HpyCH4III ACNGT 2 cut(s) 455, 538
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 3 cut(s) 336, 1153, 1159
HpyF3I CTNAG 2 cut(s) 71, 858
HpySE526I ACGT 1 cut(s) 98
Hsp92II CATG 1 cut(s) 531
HspAI GCGC 1 cut(s) 1126
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 7 cut(s) 16, 83, 123, 205, 247, 286, 616
LguI GCTCTTC 1 cut(s) 1135
LmnI GCTCC 1 cut(s) 885
LpnPI CCDG 4 cut(s) 425, 555, 654, 1036
LweI GCATC 1 cut(s) 345
MaeI CTAG 5 cut(s) 161, 176, 183, 756, 786
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 5 cut(s) 221, 455, 625, 909, 1012
MalI GATC 7 cut(s) 18, 85, 125, 207, 249, 288, 618
MboI GATC 7 cut(s) 16, 83, 123, 205, 247, 286, 616
MboII GAAGA 8 cut(s) 239, 245, 248, 665, 689, 725, 994, 1122
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 870, 890
MluCI AATT 2 cut(s) 9, 1096
MlyI GAGTC 2 cut(s) 315, 364
MmeI TCCRAC 1 cut(s) 1030
MnlI CCTC 9 cut(s) 465, 475, 525, 616, 628, 741, 760, 970, 1106
Mph1103I ATGCAT 1 cut(s) 338
MseI TTAA 2 cut(s) 167, 926
MslI CAYNNNNRTG 3 cut(s) 318, 423, 501
MvnI CGCG 1 cut(s) 724
NdeI CATATG 1 cut(s) 25
NdeII GATC 7 cut(s) 16, 83, 123, 205, 247, 286, 616
NlaIII CATG 1 cut(s) 531
NlaIV GGNNCC 2 cut(s) 57, 540
NmuCI GTSAC 2 cut(s) 909, 1012
NsiI ATGCAT 1 cut(s) 338
PaeR7I CTCGAG 2 cut(s) 303, 352
PciSI GCTCTTC 1 cut(s) 1135
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PfeI GAWTC 7 cut(s) 151, 172, 179, 201, 370, 397, 524
Ple19I CGATCG 1 cut(s) 619
PleI GAGTC 2 cut(s) 314, 363
PpsI GAGTC 2 cut(s) 314, 363
PspN4I GGNNCC 2 cut(s) 57, 540
PspPI GGNCC 1 cut(s) 719
PspXI VCTCGAGB 1 cut(s) 352
PsuI RGATCY 1 cut(s) 123
PvuI CGATCG 1 cut(s) 619
RsaI GTAC 1 cut(s) 996
RsaNI GTAC 1 cut(s) 995
RseI CAYNNNNRTG 3 cut(s) 318, 423, 501
SapI GCTCTTC 1 cut(s) 1135
SaqAI TTAA 2 cut(s) 167, 926
Sau3AI GATC 7 cut(s) 16, 83, 123, 205, 247, 286, 616
Sau96I GGNCC 1 cut(s) 719
SchI GAGTC 2 cut(s) 315, 364
SduI GDGCHC 2 cut(s) 870, 890
SfaNI GCATC 1 cut(s) 345
SfcI CTRYAG 1 cut(s) 556
Sfr274I CTCGAG 2 cut(s) 303, 352
SinI GGWCC 1 cut(s) 719
SlaI CTCGAG 2 cut(s) 303, 352
SmiMI CAYNNNNRTG 3 cut(s) 318, 423, 501
SmlI CTYRAG 4 cut(s) 196, 303, 352, 469
SmoI CTYRAG 4 cut(s) 196, 303, 352, 469
Sse9I AATT 2 cut(s) 9, 1096
SsiI CCGC 2 cut(s) 722, 875
SspI AATATT 1 cut(s) 767
SspMI CTAG 5 cut(s) 161, 176, 183, 756, 786
TaaI ACNGT 2 cut(s) 455, 538
TaiI ACGT 1 cut(s) 101
TasI AATT 2 cut(s) 9, 1096
TatI WGTACW 1 cut(s) 994
TfiI GAWTC 7 cut(s) 151, 172, 179, 201, 370, 397, 524
Tru1I TTAA 2 cut(s) 167, 926
Tru9I TTAA 2 cut(s) 167, 926
TscAI CASTG 2 cut(s) 84, 320
TseFI GTSAC 2 cut(s) 909, 1012
Tsp45I GTSAC 2 cut(s) 909, 1012
TspDTI ATGAA 3 cut(s) 272, 516, 579
TspGWI ACGGA 5 cut(s) 209, 363, 409, 726, 944
TspRI CASTG 2 cut(s) 84, 320
VpaK11BI GGWCC 1 cut(s) 719
XapI RAATTY 1 cut(s) 1096
XbaI TCTAGA 2 cut(s) 160, 175
XhoI CTCGAG 2 cut(s) 303, 352
XmiI GTMKAC 1 cut(s) 507
XspI CTAG 5 cut(s) 161, 176, 183, 756, 786
Zsp2I ATGCAT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.