AT3G21170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
7419917 .. 7421366
1450 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21170.1

Sequence Viewer

Length: 1188 bp
ATGATGACGTTCAACGACCTTCCGGAGGATTTGGTAGTGGAGATACTCTCTAGAGTTCCGGCTGTATTTCTAGCACGATTACGATCAACATCCAAACGATGGAACACTTTGATCAAAGATGGGAAACTTTCTAAGAAGCACTCTTCTAATGCTCCAAGGCACTCTATGGCTCTCGTGTTGATTGATCATAAGGTTTATTCAGTGAGATCCAATCTCCGTGGAATTCACAATAGCGTTGCTCCATATGTTAACATAACATGTCATTTTAGCCTAAAAGAACATCTTTCTAATAATTATTCAACAGAAGTCGATATAGGCCACGTCTTTCACTGCGATGGCTTATTGCTATGCACCACCAAGGACTATAGACTGGTGGTTTGGAATCCGCTTTCAGGTGAAACAAGGTGGATTCAACCAAGATTTTGCTACAAGAAAGATGACTGCTATGCTCTCGGTAGATCCTCTTGCAACAAGTACAAAATCTTGAGGCAGGGTCGTCTTATCAATCCTAGCGAAGAACGTTACGTGTACAACATCGTGGGGGAGGATCTTGTTATCAACAATAGCCAAGAACGTTACGAGTACGAAATCTATGACTTTAACTCTAATTCGTGGAGGAGTATTGGTGTGATCACCGGCTTGTTCAATCCAAATATCACCAGTGGCGTGTCTGTAAATGGAATCACTTACTGGTTTGATATTAGTGAACAATTCTTACTAAGTTTTGATTTCTCAACAGAGAGATTTGGAAGTGAGTCTCTCCCAGAGGGTGATAGTCATTTGGCTTTATCAGTGACTAGACAAGGGAAACGACTTTGTATGTTATCTACTAATTACACATACGTAACCGGAACAAACGTTAACTTATGGATAGCAACGAAGACTAGTGAGAACACCAGAGCAATGTCATGGAGCAAGTTCCCAATACTGCGGGGCGGAGTTGGTCTACGCTATCGTTGTCATTTTAGGGAAGGGGTGAGTTTCTTCGCATACCAAGTTAAGGAGAAGATTGTTGTAGTTTCTTGTCATAGACCCAACCGGCACTCCAAGGACATCATACACATTGTGGAAAATGATAAATTCATAGAATTGGATCATCATGGTGCAAAACCTACACATGAATTATCTCCTACCCCACGTCTCCTCATATATGTTCCAAGTTTGGTTCAAATTCAACATGGTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

395

Amino Acids

45.43

Weight (kDa)

9.0

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 43 4.5e-10 F-box domain
F-box-like PF12937 4 - 45 1.2e-07 F-box-like
FBA_1 PF07734 57 - 391 1.4e-75 F-box associated beta propeller domain
FBA_3 PF08268 98 - 306 2e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 99
AccI GTMKAC 1 cut(s) 946
AccIII TCCGGA 1 cut(s) 22
AciI CCGC 3 cut(s) 386, 931, 936
AclI AACGTT 3 cut(s) 520, 574, 858
AclWI GGATC 4 cut(s) 201, 453, 555, 1101
AcsI RAATTY 3 cut(s) 222, 1079, 1170
AdeI CACNNNGTG 1 cut(s) 1066
AfaI GTAC 3 cut(s) 476, 530, 584
AfiI CCNNNNNNNGG 4 cut(s) 25, 99, 392, 1000
AflIII ACRYGT 2 cut(s) 257, 525
AgsI TTSAA 6 cut(s) 13, 300, 413, 646, 1169, 1175
AhlI ACTAGT 1 cut(s) 884
AjiI CACGTC 2 cut(s) 322, 1139
Alw26I GTCTC 2 cut(s) 762, 1145
AlwI GGATC 4 cut(s) 201, 453, 555, 1101
Aor13HI TCCGGA 1 cut(s) 22
AoxI GGCC 1 cut(s) 316
ApoI RAATTY 3 cut(s) 222, 1079, 1170
ArsI GACNNNNNNTTYG 2 cut(s) 360, 392
AsuHPI GGTGA 5 cut(s) 407, 625, 649, 782, 988
BauI CACGAG 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 887
BccI CCATC 3 cut(s) 93, 113, 329
BclI TGATCA 3 cut(s) 111, 184, 630
BcoDI GTCTC 2 cut(s) 762, 1145
BcuI ACTAGT 1 cut(s) 884
BfaI CTAG 5 cut(s) 51, 71, 510, 798, 885
BfmI CTRYAG 1 cut(s) 364
BmgBI CACGTC 2 cut(s) 322, 1139
BpiI GAAGAC 1 cut(s) 887
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpuEI CTTGAG 1 cut(s) 505
BsaAI YACGTR 2 cut(s) 526, 844
BsaBI GATNNNNATC 2 cut(s) 82, 88
BsaJI CCNNGG 4 cut(s) 155, 217, 357, 1047
BsaWI WCCGGW 2 cut(s) 22, 848
BsaXI ACNNNNNCTCC 4 cut(s) 610, 640, 1028, 1058
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 99, 392, 1000
Bse118I RCCGGY 2 cut(s) 635, 1038
Bse1I ACTGG 3 cut(s) 375, 660, 695
Bse3DI GCAATG 1 cut(s) 909
Bse8I GATNNNNATC 2 cut(s) 82, 88
BseAI TCCGGA 1 cut(s) 22
BseDI CCNNGG 4 cut(s) 155, 217, 357, 1047
BseGI GGATG 1 cut(s) 89
BseJI GATNNNNATC 2 cut(s) 82, 88
BseLI CCNNNNNNNGG 4 cut(s) 25, 99, 392, 1000
BseMI GCAATG 1 cut(s) 909
BseNI ACTGG 3 cut(s) 375, 660, 695
BseRI GAGGAG 2 cut(s) 631, 1133
BshFI GGCC 1 cut(s) 318
BsiSI CCGG 5 cut(s) 23, 59, 636, 849, 1039
BslI CCNNNNNNNGG 4 cut(s) 25, 99, 392, 1000
BsmAI GTCTC 2 cut(s) 762, 1145
BsmBI CGTCTC 1 cut(s) 1145
BsnI GGCC 1 cut(s) 318
Bsp13I TCCGGA 1 cut(s) 22
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 8 cut(s) 83, 111, 184, 206, 458, 547, 630, 1093
BspACI CCGC 3 cut(s) 386, 931, 936
BspANI GGCC 1 cut(s) 318
BspEI TCCGGA 1 cut(s) 22
BspPI GGATC 4 cut(s) 201, 453, 555, 1101
BsrDI GCAATG 1 cut(s) 909
BsrFI RCCGGY 2 cut(s) 635, 1038
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 3 cut(s) 375, 660, 695
BssAI RCCGGY 2 cut(s) 635, 1038
BssECI CCNNGG 4 cut(s) 155, 217, 357, 1047
BssMI GATC 8 cut(s) 83, 111, 184, 206, 458, 547, 630, 1093
BssSI CACGAG 1 cut(s) 173
BssT1I CCWWGG 3 cut(s) 155, 357, 1047
Bst2BI CACGAG 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 148
BstAUI TGTACA 1 cut(s) 528
BstBAI YACGTR 2 cut(s) 526, 844
BstDEI CTNAG 2 cut(s) 132, 719
BstDSI CCRYGG 1 cut(s) 217
BstENI CCTNNNNNAGG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 8 cut(s) 86, 114, 187, 209, 461, 550, 633, 1096
BstMAI GTCTC 2 cut(s) 762, 1145
BstMBI GATC 8 cut(s) 83, 111, 184, 206, 458, 547, 630, 1093
BstNSI RCATGY 1 cut(s) 261
BstSFI CTRYAG 1 cut(s) 364
BstSNI TACGTA 1 cut(s) 844
BstV2I GAAGAC 1 cut(s) 887
BstX2I RGATCY 3 cut(s) 206, 458, 547
BstYI RGATCY 3 cut(s) 206, 458, 547
BsuRI GGCC 1 cut(s) 318
BtgI CCRYGG 1 cut(s) 217
BtgZI GCGATG 1 cut(s) 348
BtrI CACGTC 2 cut(s) 322, 1139
BtsCI GGATG 1 cut(s) 89
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 4 cut(s) 207, 328, 667, 798
Cfr10I RCCGGY 2 cut(s) 635, 1038
Csp6I GTAC 3 cut(s) 475, 529, 583
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviAII CATG 5 cut(s) 258, 909, 1100, 1118, 1178
CviJI RGCY 8 cut(s) 62, 170, 270, 318, 339, 567, 639, 785
CviKI_1 RGCY 8 cut(s) 62, 170, 270, 318, 339, 567, 639, 785
CviQI GTAC 3 cut(s) 475, 529, 583
DdeI CTNAG 2 cut(s) 132, 719
DpnI GATC 8 cut(s) 85, 113, 186, 208, 460, 549, 632, 1095
DpnII GATC 8 cut(s) 83, 111, 184, 206, 458, 547, 630, 1093
DraIII CACNNNGTG 1 cut(s) 1066
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
EciI GGCGGA 1 cut(s) 951
Eco105I TACGTA 1 cut(s) 844
Eco130I CCWWGG 3 cut(s) 155, 357, 1047
EcoNI CCTNNNNNAGG 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 222
EcoT14I CCWWGG 3 cut(s) 155, 357, 1047
ErhI CCWWGG 3 cut(s) 155, 357, 1047
Esp3I CGTCTC 1 cut(s) 1145
FaeI CATG 5 cut(s) 261, 912, 1103, 1121, 1181
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FatI CATG 5 cut(s) 257, 908, 1099, 1117, 1177
FauI CCCGC 1 cut(s) 924
FauNDI CATATG 1 cut(s) 244
FbaI TGATCA 3 cut(s) 111, 184, 630
FblI GTMKAC 1 cut(s) 946
FokI GGATG 1 cut(s) 76
FspBI CTAG 5 cut(s) 51, 71, 510, 798, 885
HaeIII GGCC 1 cut(s) 318
HapII CCGG 5 cut(s) 23, 59, 636, 849, 1039
Hin1II CATG 5 cut(s) 261, 912, 1103, 1121, 1181
HincII GTYRAC 2 cut(s) 250, 862
HindII GTYRAC 2 cut(s) 250, 862
HinfI GANTC 4 cut(s) 382, 409, 681, 755
HpaI GTTAAC 2 cut(s) 250, 862
HpaII CCGG 5 cut(s) 23, 59, 636, 849, 1039
HphI GGTGA 5 cut(s) 407, 625, 649, 782, 988
Hpy166II GTNNAC 5 cut(s) 250, 529, 707, 862, 947
Hpy188III TCNNGA 3 cut(s) 23, 51, 484
Hpy8I GTNNAC 5 cut(s) 250, 529, 707, 862, 947
HpyAV CCTTC 2 cut(s) 29, 965
HpyCH4IV ACGT 8 cut(s) 8, 321, 520, 525, 574, 843, 858, 1138
HpyCH4V TGCA 3 cut(s) 351, 468, 1106
HpyF3I CTNAG 2 cut(s) 132, 719
HpySE526I ACGT 8 cut(s) 8, 321, 520, 525, 574, 843, 858, 1138
Hsp92II CATG 5 cut(s) 261, 912, 1103, 1121, 1181
Kpn2I TCCGGA 1 cut(s) 22
Ksp22I TGATCA 3 cut(s) 111, 184, 630
KspAI GTTAAC 2 cut(s) 250, 862
Kzo9I GATC 8 cut(s) 83, 111, 184, 206, 458, 547, 630, 1093
LmnI GCTCC 3 cut(s) 157, 244, 912
MaeI CTAG 5 cut(s) 51, 71, 510, 798, 885
MaeII ACGT 8 cut(s) 8, 321, 520, 525, 574, 843, 858, 1138
MaeIII GTNAC 4 cut(s) 521, 575, 793, 844
MalI GATC 8 cut(s) 85, 113, 186, 208, 460, 549, 632, 1095
MboI GATC 8 cut(s) 83, 111, 184, 206, 458, 547, 630, 1093
MboII GAAGA 5 cut(s) 135, 527, 892, 976, 1018
MflI RGATCY 3 cut(s) 206, 458, 547
MluCI AATT 9 cut(s) 222, 292, 607, 710, 832, 1079, 1088, 1121, 1170
MlyI GAGTC 1 cut(s) 764
MnlI CCTC 7 cut(s) 19, 472, 480, 538, 609, 760, 1154
MroI TCCGGA 1 cut(s) 22
MseI TTAA 4 cut(s) 249, 600, 861, 999
MslI CAYNNNNRTG 2 cut(s) 333, 1101
MspI CCGG 5 cut(s) 23, 59, 636, 849, 1039
NdeI CATATG 1 cut(s) 244
NdeII GATC 8 cut(s) 83, 111, 184, 206, 458, 547, 630, 1093
NlaIII CATG 5 cut(s) 261, 912, 1103, 1121, 1181
NmuCI GTSAC 1 cut(s) 793
NspI RCATGY 1 cut(s) 261
PciI ACATGT 1 cut(s) 257
PfeI GAWTC 3 cut(s) 382, 409, 681
PflMI CCANNNNNTGG 1 cut(s) 99
PleI GAGTC 1 cut(s) 763
PpsI GAGTC 1 cut(s) 763
Ppu21I YACGTR 2 cut(s) 526, 844
PscI ACATGT 1 cut(s) 257
Psp1406I AACGTT 3 cut(s) 520, 574, 858
PsrI GAACNNNNNNTAC 2 cut(s) 699, 731
PsuI RGATCY 3 cut(s) 206, 458, 547
RsaI GTAC 3 cut(s) 476, 530, 584
RsaNI GTAC 3 cut(s) 475, 529, 583
RseI CAYNNNNRTG 2 cut(s) 333, 1101
SaqAI TTAA 4 cut(s) 249, 600, 861, 999
Sau3AI GATC 8 cut(s) 83, 111, 184, 206, 458, 547, 630, 1093
SchI GAGTC 1 cut(s) 764
SfcI CTRYAG 1 cut(s) 364
SmiMI CAYNNNNRTG 2 cut(s) 333, 1101
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
SnaBI TACGTA 1 cut(s) 844
SpeI ACTAGT 1 cut(s) 884
Sse9I AATT 9 cut(s) 222, 292, 607, 710, 832, 1079, 1088, 1121, 1170
SsiI CCGC 3 cut(s) 386, 931, 936
SspMI CTAG 5 cut(s) 51, 71, 510, 798, 885
StyI CCWWGG 3 cut(s) 155, 357, 1047
TaiI ACGT 8 cut(s) 11, 324, 523, 528, 577, 846, 861, 1141
TaqI TCGA 1 cut(s) 309
TasI AATT 9 cut(s) 222, 292, 607, 710, 832, 1079, 1088, 1121, 1170
TatI WGTACW 2 cut(s) 474, 528
TfiI GAWTC 3 cut(s) 382, 409, 681
Tru1I TTAA 4 cut(s) 249, 600, 861, 999
Tru9I TTAA 4 cut(s) 249, 600, 861, 999
TscAI CASTG 4 cut(s) 207, 335, 667, 798
TseFI GTSAC 1 cut(s) 793
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 2 cut(s) 1072, 1134
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 4 cut(s) 207, 335, 667, 798
Van91I CCANNNNNTGG 1 cut(s) 99
XagI CCTNNNNNAGG 1 cut(s) 23
XapI RAATTY 3 cut(s) 222, 1079, 1170
XbaI TCTAGA 1 cut(s) 50
XceI RCATGY 1 cut(s) 261
XmiI GTMKAC 1 cut(s) 946
XspI CTAG 5 cut(s) 51, 71, 510, 798, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.