AT3G17530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
6000860 .. 6002282
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17530.1

Sequence Viewer

Length: 1167 bp
ATGATGATTTCCGATCTTCCACACGATTTGGAATCGGAAATACTCTCTAGGGTTCCGGCGAAGTCCCTAGCAAAATGGAAGACTACTTGCAAACGATGGTATGCTTTATTCAGAGATCCGAGTTTCGTCAAGAAGAACTTTGATAAAGCAGGAGGAAGGGAAATGATAGTACTGATGAATTCTAGGGTTTATTCAAACAGCGTCAATCTCCAAGGGATTAACAATAGATTTGATCCAAGTATGGAGGTTACAGGTAAACTCATCAAGCTAAATGATTCAAAAGGTGTCGATATTTCTGCTATCTTTCACTGCGACGGTTTGATATTATGCACTACGACGGAAAGCACTGGACTTGTGGTTTGGAACCCGTGTACCGGTGAAATTAGATGTATCAAACCCAGAATATTTTACCGGTGTAATGATAGGTATGCTCTTGGTTACGGAAACAGCAAATCTTCTTGCCATAGCTACAAAATCTTGAGGTCTTGCTGTTATTACGTCGACCAGAACCTCAGCCTCATGGCTGCTGAGTTTGAGATCTATGACTTTAGCACTGATTCTTGGAGAGATCTTGGTGACATCACTCGTGACATGATCGTATATTCCAGTGGCGTGTCTTTGAAAGGAAATACTTACTGGGTTTCTGGATCTAAAGAAAAAGGTTTTTTCATGCGGTATTTTGATTTTAGCAAAGAGGTATTTGGGCGTCTCCCTCTTCCATATCAGAGTTTTAATGCTAACCATACCGCGGCTCTATCAGCTGTTGGGAACGAAAAAATCGCCGTGTTGCAACAAAAAATTCTTGCAATGTCAGATGAGATGAGGATTTGGGTCACCAATAAGATTGATGAGGCCAAAGACTTGTCGTGGAGCAACTTTCTCTTAACAGTGGATTATGGTAAATTTAATTTACCATGTCTAGTGAATGTGACAAGCTTCTTGTTGGACGAGGAGAATAAAGTGGCAGTGTGTTCTGACGTAGACACGAAAGATGGACTTAGGAGCAGAATCTACATTGTGGGAAAGGATTTCTATAAAGAAGTTTTTAAAGATACAAGGGGATCAGATAACAATTGGCCACTTCTCCTCTGTTATGTTCCTAGTTTGGTTAGCATTCAGGAAAATATACCCAACAAGGCAGAAGAAAATGAAATCAAAGGAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

388

Amino Acids

44.15

Weight (kDa)

7.43

Isoelectric Point (pI)

33.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 44 4.9e-07 F-box domain
F-box-like PF12937 3 - 44 6.8e-07 F-box-like
FBA_1 PF07734 55 - 372 8.6e-98 F-box associated beta propeller domain
FBA_3 PF08268 98 - 299 4e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 501, 981
AccII CGCG 1 cut(s) 749
AciI CCGC 3 cut(s) 673, 747, 749
AclWI GGATC 4 cut(s) 110, 227, 655, 1069
AcoI YGGCCR 1 cut(s) 1076
AcsI RAATTY 3 cut(s) 178, 798, 902
AcyI GRCGYC 1 cut(s) 706
AfaI GTAC 2 cut(s) 171, 373
AfiI CCNNNNNNNGG 2 cut(s) 374, 748
AgeI ACCGGT 2 cut(s) 374, 411
AgsI TTSAA 3 cut(s) 195, 279, 622
AluBI AGCT 4 cut(s) 268, 468, 761, 936
AluI AGCT 4 cut(s) 268, 468, 761, 936
Alw26I GTCTC 1 cut(s) 713
AlwI GGATC 4 cut(s) 110, 227, 655, 1069
AoxI GGCC 2 cut(s) 852, 1076
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 3 cut(s) 178, 798, 902
ArsI GACNNNNNNTTYG 2 cut(s) 342, 374
AsiGI ACCGGT 2 cut(s) 374, 411
AsuHPI GGTGA 3 cut(s) 389, 587, 826
BaeI ACNNNNGTAYC 2 cut(s) 355, 388
BalI TGGCCA 1 cut(s) 1078
BauI CACGAG 1 cut(s) 585
BbsI GAAGAC 1 cut(s) 86
BbvCI CCTCAGC 1 cut(s) 512
BbvI GCAGC 1 cut(s) 511
BccI CCATC 2 cut(s) 90, 986
BceAI ACGGC 1 cut(s) 767
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BcoDI GTCTC 1 cut(s) 713
BfaI CTAG 5 cut(s) 48, 68, 183, 920, 1101
BglII AGATCT 2 cut(s) 537, 568
BisI GCNGC 2 cut(s) 525, 750
BlsI GCNGC 2 cut(s) 526, 751
BmcAI AGTACT 1 cut(s) 171
BmiI GGNNCC 2 cut(s) 54, 365
BmrI ACTGGG 1 cut(s) 646
BmuI ACTGGG 1 cut(s) 646
BpiI GAAGAC 1 cut(s) 86
Bpu10I CCTNAGC 1 cut(s) 512
BpuEI CTTGAG 1 cut(s) 499
BsaHI GRCGYC 1 cut(s) 706
BsaJI CCNNGG 2 cut(s) 211, 747
BsaWI WCCGGW 2 cut(s) 374, 411
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 748
Bse118I RCCGGY 2 cut(s) 374, 411
Bse1I ACTGG 3 cut(s) 352, 606, 641
Bse3DI GCAATG 1 cut(s) 813
BseDI CCNNGG 2 cut(s) 211, 747
BseLI CCNNNNNNNGG 2 cut(s) 374, 748
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 2 cut(s) 519, 526
BseNI ACTGG 3 cut(s) 352, 606, 641
BseRI GAGGAG 2 cut(s) 965, 1076
BseXI GCAGC 1 cut(s) 511
Bsh1236I CGCG 1 cut(s) 749
BshFI GGCC 2 cut(s) 854, 1078
BshTI ACCGGT 2 cut(s) 374, 411
BsiSI CCGG 3 cut(s) 56, 375, 412
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 2 cut(s) 374, 748
BsmAI GTCTC 1 cut(s) 713
BsmBI CGTCTC 1 cut(s) 713
BsmFI GGGAC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 1113
BsnI GGCC 2 cut(s) 854, 1078
Bsp143I GATC 8 cut(s) 13, 115, 232, 537, 568, 594, 647, 1061
BspACI CCGC 3 cut(s) 673, 747, 749
BspANI GGCC 2 cut(s) 854, 1078
BspCNI CTCAG 2 cut(s) 520, 525
BspFNI CGCG 1 cut(s) 749
BspLI GGNNCC 2 cut(s) 54, 365
BspPI GGATC 4 cut(s) 110, 227, 655, 1069
BsrDI GCAATG 1 cut(s) 813
BsrFI RCCGGY 2 cut(s) 374, 411
BsrI ACTGG 3 cut(s) 352, 606, 641
BssAI RCCGGY 2 cut(s) 374, 411
BssECI CCNNGG 2 cut(s) 211, 747
BssMI GATC 8 cut(s) 13, 115, 232, 537, 568, 594, 647, 1061
BssNI GRCGYC 1 cut(s) 706
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 585
Bst4CI ACNGT 2 cut(s) 317, 889
Bst6I CTCTTC 1 cut(s) 720
BstACI GRCGYC 1 cut(s) 706
BstDEI CTNAG 3 cut(s) 512, 528, 998
BstDSI CCRYGG 1 cut(s) 747
BstEII GGTNACC 1 cut(s) 832
BstFNI CGCG 1 cut(s) 749
BstKTI GATC 8 cut(s) 16, 118, 235, 540, 571, 597, 650, 1064
BstMAI GTCTC 1 cut(s) 713
BstMBI GATC 8 cut(s) 13, 115, 232, 537, 568, 594, 647, 1061
BstMWI GCNNNNNNNGC 1 cut(s) 758
BstPI GGTNACC 1 cut(s) 832
BstUI CGCG 1 cut(s) 749
BstV1I GCAGC 1 cut(s) 511
BstV2I GAAGAC 1 cut(s) 86
BstX2I RGATCY 4 cut(s) 115, 537, 568, 647
BstYI RGATCY 4 cut(s) 115, 537, 568, 647
BsuRI GGCC 2 cut(s) 854, 1078
BtgI CCRYGG 1 cut(s) 747
BtsI GCAGTG 2 cut(s) 307, 972
BtsIMutI CAGTG 6 cut(s) 307, 345, 552, 613, 894, 972
Cfr10I RCCGGY 2 cut(s) 374, 411
Cfr42I CCGCGG 1 cut(s) 750
CseI GACGC 2 cut(s) 190, 695
Csp6I GTAC 2 cut(s) 170, 372
CspAI ACCGGT 2 cut(s) 374, 411
CspCI CAANNNNNGTGG 2 cut(s) 9, 44
CviAII CATG 4 cut(s) 520, 592, 670, 915
CviJI RGCY 9 cut(s) 268, 468, 516, 524, 752, 761, 854, 936, 1078
CviKI_1 RGCY 9 cut(s) 268, 468, 516, 524, 752, 761, 854, 936, 1078
CviQI GTAC 2 cut(s) 170, 372
DdeI CTNAG 3 cut(s) 512, 528, 998
DpnI GATC 8 cut(s) 15, 117, 234, 539, 570, 596, 649, 1063
DpnII GATC 8 cut(s) 13, 115, 232, 537, 568, 594, 647, 1061
DraI TTTAAA 1 cut(s) 1048
EaeI YGGCCR 1 cut(s) 1076
Eam1104I CTCTTC 1 cut(s) 720
EarI CTCTTC 1 cut(s) 720
Eco130I CCWWGG 1 cut(s) 211
Eco91I GGTNACC 1 cut(s) 832
EcoO65I GGTNACC 1 cut(s) 832
EcoRI GAATTC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
Esp3I CGTCTC 1 cut(s) 713
FaeI CATG 4 cut(s) 523, 595, 673, 918
FalI AAGNNNNNCTT 4 cut(s) 122, 154, 981, 1013
FaqI GGGAC 1 cut(s) 49
FatI CATG 4 cut(s) 519, 591, 669, 914
FblI GTMKAC 2 cut(s) 501, 981
Fnu4HI GCNGC 2 cut(s) 525, 750
Fsp4HI GCNGC 2 cut(s) 525, 750
FspBI CTAG 5 cut(s) 48, 68, 183, 920, 1101
GluI GCNGC 2 cut(s) 525, 750
HaeIII GGCC 2 cut(s) 854, 1078
HapII CCGG 3 cut(s) 56, 375, 412
HgaI GACGC 2 cut(s) 190, 695
Hin1I GRCGYC 1 cut(s) 706
Hin1II CATG 4 cut(s) 523, 595, 673, 918
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HindIII AAGCTT 1 cut(s) 934
HinfI GANTC 4 cut(s) 32, 275, 557, 1008
HpaII CCGG 3 cut(s) 56, 375, 412
HphI GGTGA 3 cut(s) 389, 587, 826
Hpy166II GTNNAC 4 cut(s) 257, 372, 502, 982
Hpy188I TCNGA 8 cut(s) 13, 37, 113, 120, 726, 814, 976, 1066
Hpy188III TCNNGA 5 cut(s) 130, 478, 587, 645, 1118
Hpy8I GTNNAC 4 cut(s) 257, 372, 502, 982
Hpy99I CGWCG 3 cut(s) 317, 340, 503
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 2 cut(s) 317, 889
HpyCH4IV ACGT 2 cut(s) 498, 978
HpyCH4V TGCA 4 cut(s) 90, 330, 790, 806
HpyF10VI GCNNNNNNNGC 1 cut(s) 758
HpyF3I CTNAG 3 cut(s) 512, 528, 998
HpySE526I ACGT 2 cut(s) 498, 978
Hsp92I GRCGYC 1 cut(s) 706
Hsp92II CATG 4 cut(s) 523, 595, 673, 918
KspI CCGCGG 1 cut(s) 750
Kzo9I GATC 8 cut(s) 13, 115, 232, 537, 568, 594, 647, 1061
LmnI GCTCC 2 cut(s) 870, 1002
Lsp1109I GCAGC 1 cut(s) 511
MaeI CTAG 5 cut(s) 48, 68, 183, 920, 1101
MaeII ACGT 2 cut(s) 498, 978
MaeIII GTNAC 6 cut(s) 247, 437, 575, 587, 832, 928
MalI GATC 8 cut(s) 15, 117, 234, 539, 570, 596, 649, 1063
MboI GATC 8 cut(s) 13, 115, 232, 537, 568, 594, 647, 1061
MboII GAAGA 6 cut(s) 8, 91, 145, 447, 707, 1154
MfeI CAATTG 1 cut(s) 1072
MflI RGATCY 4 cut(s) 115, 537, 568, 647
MlsI TGGCCA 1 cut(s) 1078
MluCI AATT 6 cut(s) 178, 381, 798, 902, 907, 1072
MluNI TGGCCA 1 cut(s) 1078
MmeI TCCRAC 1 cut(s) 924
Mox20I TGGCCA 1 cut(s) 1078
MscI TGGCCA 1 cut(s) 1078
MseI TTAA 5 cut(s) 219, 732, 884, 906, 1047
Msp20I TGGCCA 1 cut(s) 1078
MspA1I CMGCKG 2 cut(s) 749, 761
MspI CCGG 3 cut(s) 56, 375, 412
MunI CAATTG 1 cut(s) 1072
Mva1269I GAATGC 1 cut(s) 1113
MvnI CGCG 1 cut(s) 749
MwoI GCNNNNNNNGC 1 cut(s) 758
NdeII GATC 8 cut(s) 13, 115, 232, 537, 568, 594, 647, 1061
NlaIII CATG 4 cut(s) 523, 595, 673, 918
NlaIV GGNNCC 2 cut(s) 54, 365
NmuCI GTSAC 4 cut(s) 575, 587, 832, 928
PctI GAATGC 1 cut(s) 1113
PfeI GAWTC 4 cut(s) 32, 275, 557, 1008
PinAI ACCGGT 2 cut(s) 374, 411
PkrI GCNGC 2 cut(s) 526, 751
PspEI GGTNACC 1 cut(s) 832
PspN4I GGNNCC 2 cut(s) 54, 365
PsuI RGATCY 4 cut(s) 115, 537, 568, 647
PvuII CAGCTG 1 cut(s) 761
RsaI GTAC 2 cut(s) 171, 373
RsaNI GTAC 2 cut(s) 170, 372
SacII CCGCGG 1 cut(s) 750
SalI GTCGAC 1 cut(s) 500
SaqAI TTAA 5 cut(s) 219, 732, 884, 906, 1047
SatI GCNGC 2 cut(s) 525, 750
Sau3AI GATC 8 cut(s) 13, 115, 232, 537, 568, 594, 647, 1061
ScaI AGTACT 1 cut(s) 171
Sfr303I CCGCGG 1 cut(s) 750
SgrBI CCGCGG 1 cut(s) 750
SmlI CTYRAG 1 cut(s) 478
SmoI CTYRAG 1 cut(s) 478
Sse9I AATT 6 cut(s) 178, 381, 798, 902, 907, 1072
SsiI CCGC 3 cut(s) 673, 747, 749
SspI AATATT 1 cut(s) 405
SspMI CTAG 5 cut(s) 48, 68, 183, 920, 1101
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 2 cut(s) 317, 889
TaiI ACGT 2 cut(s) 501, 981
TaqI TCGA 2 cut(s) 288, 501
TasI AATT 6 cut(s) 178, 381, 798, 902, 907, 1072
TatI WGTACW 1 cut(s) 169
TauI GCSGC 1 cut(s) 752
TfiI GAWTC 4 cut(s) 32, 275, 557, 1008
Tru1I TTAA 5 cut(s) 219, 732, 884, 906, 1047
Tru9I TTAA 5 cut(s) 219, 732, 884, 906, 1047
TscAI CASTG 6 cut(s) 314, 352, 559, 613, 894, 972
TseFI GTSAC 4 cut(s) 575, 587, 832, 928
TseI GCWGC 1 cut(s) 524
Tsp45I GTSAC 4 cut(s) 575, 587, 832, 928
TspDTI ATGAA 3 cut(s) 191, 658, 1164
TspGWI ACGGA 2 cut(s) 353, 456
TspRI CASTG 6 cut(s) 314, 352, 559, 613, 894, 972
XapI RAATTY 3 cut(s) 178, 798, 902
XmiI GTMKAC 2 cut(s) 501, 981
XspI CTAG 5 cut(s) 48, 68, 183, 920, 1101
ZrmI AGTACT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.