AT3G22870

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
8096230 .. 8097471
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G22870.1

Sequence Viewer

Length: 1242 bp
ATGACGTTGACGATCTCCGATCTTCCAAGGGATCTGAAGAAGAAAATATTCTCAAGAATTCCGTTGAGATATGTGAGAGCATTGCGATTAACCTGCAAAGAGTGGGAAACTTTAATCAAAAGTCGGAGCTTAAAGATCGACGAAGAGGAGTCTCAGATGGTCGCGTTGATGGATTACAATCTTTGTTTAATGAGCAAATCCTTTAATGGAGGAGATCCATCTACAGAGATTAAAGGCAAACTTACTTGCTTTGACGAACAAGTAAAGGTATCTATGTTGTTTCATTGCGAGGGTTTATTGTTATGCATCTTGAAAGACGATAATACTAAGGTTGTTGTTTGGAATCCGTATTTGGGGCAAAGAAGGTTTATCCAAGTTAGATTTTCACACATCCCAGGCGGATGGGACCAGTTCAGTTACGCTCTCGGATACTACAAGAATAATAATATGATGAAATCATTTAAACTCTTGAGGTTTTTTGATTATTTCTATACCTCCAATGATTTTGTTTTCTATGAAATCTATGATTTCGACTCTGGTTTATGGAAAACTCTTGATGTCACTCCATACTGGCGTATAAGGTTTTTTGATGATATTGGCGTTTCTCTCAAGGGAAACACTTACTGGTGCGCTAAAGAAAGGAAGCCAGAGTGGAACGCAGACCCTTTTATCATTGTTGATCACATCATCTGTTTTGATTTTACAAGTGAGAGGTTTGGTCCGCTTGTGCCTTTGCCGTTTAGAGCTATGAAGGAGAGTCTTGTGACTCTATCTTGTGTTAGGGAAGAGAAGCTTGCTGCTTTATTTTGTCGCGATGTTGTTGTTGAGGTATGGATTACGACTACGATTGAATTCGATAAGGTGTCGTGGAGCAAGTTTTTGACCTTTGGTGTGCGTGACTGCCCGATGATTTATTCTTGTACAGGGAGTTTCTTCATTGACGAGGTGAACAAAGTCGCCGTGATTTTCGGGCAACCGTTGAAACGCGACAAAGTTTTCATCATTGGAGAGGCTGGACAAGTCCGAGATGTTGATCTCGGAGAACCTGCCCACCAAGATAGTTGGCTATATGTGTGTCCTTATGTTCCAAGTTTAGTGAAAATCAAGCAACCTCCAGGATGCAAAAGGAGAAGACAAAGCAGTTCAGAAAACCGTCGATATAAGCGAAACATGATGAGACTTGTCGAACTTGAAAAGTATCATATTGCCATGGAACCCAAAAGAGGAGACAAAACAATATGA

Protein Analysis

413

Amino Acids

48.52

Weight (kDa)

8.8

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 46 3.8e-09 F-box domain
FBA_1 PF07734 52 - 368 1.1e-100 F-box associated beta propeller domain
FBA_3 PF08268 92 - 293 1.5e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 101, 1054
AccII CGCG 3 cut(s) 164, 813, 987
AciI CCGC 2 cut(s) 399, 722
AclWI GGATC 2 cut(s) 39, 209
AcsI RAATTY 2 cut(s) 57, 851
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 1 cut(s) 922
AfiI CCNNNNNNNGG 2 cut(s) 353, 1223
AgsI TTSAA 4 cut(s) 313, 851, 982, 1193
AjnI CCWGG 2 cut(s) 394, 1114
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 3 cut(s) 129, 746, 793
AluI AGCT 3 cut(s) 129, 746, 793
Alw26I GTCTC 3 cut(s) 156, 1171, 1221
AlwI GGATC 2 cut(s) 39, 209
ApeKI GCWGC 1 cut(s) 797
ApoI RAATTY 2 cut(s) 57, 851
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 632
AspS9I GGNCC 2 cut(s) 406, 719
AsuHPI GGTGA 1 cut(s) 958
AvaII GGWCC 2 cut(s) 406, 719
BbsI GAAGAC 1 cut(s) 1138
BbvI GCAGC 1 cut(s) 784
BccI CCATC 4 cut(s) 151, 163, 226, 396
BceAI ACGGC 2 cut(s) 721, 944
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciT130I CCWGG 2 cut(s) 396, 1116
BciVI GTATCC 1 cut(s) 422
BclI TGATCA 1 cut(s) 679
BcoDI GTCTC 3 cut(s) 156, 1171, 1221
BfmI CTRYAG 1 cut(s) 222
BfuAI ACCTGC 2 cut(s) 101, 1054
BfuI GTATCC 1 cut(s) 422
BisI GCNGC 1 cut(s) 798
BlsI GCNGC 1 cut(s) 799
Bme1390I CCNGG 2 cut(s) 396, 1116
Bme18I GGWCC 2 cut(s) 406, 719
BmgT120I GGNCC 2 cut(s) 406, 719
BmiI GGNNCC 2 cut(s) 407, 1215
BmrFI CCNGG 2 cut(s) 396, 1116
BmsI GCATC 2 cut(s) 315, 1109
BpiI GAAGAC 1 cut(s) 1138
BpmI CTGGAG 1 cut(s) 1098
BpuEI CTTGAG 3 cut(s) 37, 490, 593
BsaBI GATNNNNATC 2 cut(s) 177, 1032
BsaJI CCNNGG 3 cut(s) 26, 394, 1209
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 1223
Bse1I ACTGG 3 cut(s) 409, 575, 629
Bse3DI GCAATG 2 cut(s) 80, 283
Bse8I GATNNNNATC 2 cut(s) 177, 1032
BseBI CCWGG 2 cut(s) 396, 1116
BseDI CCNNGG 3 cut(s) 26, 394, 1209
BseGI GGATG 3 cut(s) 390, 407, 1124
BseJI GATNNNNATC 2 cut(s) 177, 1032
BseLI CCNNNNNNNGG 2 cut(s) 353, 1223
BseMI GCAATG 2 cut(s) 80, 283
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 3 cut(s) 409, 575, 629
BseRI GAGGAG 3 cut(s) 161, 225, 1239
BseXI GCAGC 1 cut(s) 784
Bsh1236I CGCG 3 cut(s) 164, 813, 987
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 2 cut(s) 353, 1223
BsmAI GTCTC 3 cut(s) 156, 1171, 1221
BsmFI GGGAC 1 cut(s) 419
Bsp1407I TGTACA 1 cut(s) 920
Bsp143I GATC 7 cut(s) 12, 19, 31, 135, 214, 679, 1033
Bsp19I CCATGG 1 cut(s) 1209
Bsp68I TCGCGA 1 cut(s) 813
BspACI CCGC 2 cut(s) 399, 722
BspCNI CTCAG 1 cut(s) 166
BspFNI CGCG 3 cut(s) 164, 813, 987
BspLI GGNNCC 2 cut(s) 407, 1215
BspMI ACCTGC 2 cut(s) 101, 1054
BspPI GGATC 2 cut(s) 39, 209
BsrDI GCAATG 2 cut(s) 80, 283
BsrGI TGTACA 1 cut(s) 920
BsrI ACTGG 3 cut(s) 409, 575, 629
BssECI CCNNGG 3 cut(s) 26, 394, 1209
BssMI GATC 7 cut(s) 12, 19, 31, 135, 214, 679, 1033
BssT1I CCWWGG 2 cut(s) 26, 1209
Bst2UI CCWGG 2 cut(s) 396, 1116
Bst4CI ACNGT 2 cut(s) 978, 1154
Bst6I CTCTTC 2 cut(s) 138, 780
BstAUI TGTACA 1 cut(s) 920
BstC8I GCNNGC 1 cut(s) 795
BstDEI CTNAG 2 cut(s) 153, 327
BstDSI CCRYGG 1 cut(s) 1209
BstF5I GGATG 3 cut(s) 390, 407, 1124
BstFNI CGCG 3 cut(s) 164, 813, 987
BstHHI GCGC 1 cut(s) 632
BstKTI GATC 7 cut(s) 15, 22, 34, 138, 217, 682, 1036
BstMAI GTCTC 3 cut(s) 156, 1171, 1221
BstMBI GATC 7 cut(s) 12, 19, 31, 135, 214, 679, 1033
BstNI CCWGG 2 cut(s) 396, 1116
BstSCI CCNGG 2 cut(s) 394, 1114
BstSFI CTRYAG 1 cut(s) 222
BstUI CGCG 3 cut(s) 164, 813, 987
BstV1I GCAGC 1 cut(s) 784
BstV2I GAAGAC 1 cut(s) 1138
BstX2I RGATCY 2 cut(s) 31, 214
BstXI CCANNNNNNTGG 1 cut(s) 402
BstYI RGATCY 2 cut(s) 31, 214
BsuI GTATCC 1 cut(s) 422
BtgI CCRYGG 1 cut(s) 1209
BtgZI GCGATG 1 cut(s) 828
BtsCI GGATG 3 cut(s) 390, 407, 1124
BtuMI TCGCGA 1 cut(s) 813
BveI ACCTGC 2 cut(s) 101, 1054
Cac8I GCNNGC 1 cut(s) 795
CfoI GCGC 1 cut(s) 632
Cfr13I GGNCC 2 cut(s) 406, 719
Csp6I GTAC 1 cut(s) 921
CviAII CATG 2 cut(s) 1171, 1210
CviJI RGCY 6 cut(s) 129, 646, 746, 793, 1013, 1066
CviKI_1 RGCY 6 cut(s) 129, 646, 746, 793, 1013, 1066
CviQI GTAC 1 cut(s) 921
DdeI CTNAG 2 cut(s) 153, 327
DpnI GATC 7 cut(s) 14, 21, 33, 137, 216, 681, 1035
DpnII GATC 7 cut(s) 12, 19, 31, 135, 214, 679, 1033
DraI TTTAAA 1 cut(s) 463
Eam1104I CTCTTC 2 cut(s) 138, 780
EarI CTCTTC 2 cut(s) 138, 780
EciI GGCGGA 1 cut(s) 414
Eco130I CCWWGG 2 cut(s) 26, 1209
Eco47I GGWCC 2 cut(s) 406, 719
Eco57I CTGAAG 1 cut(s) 56
EcoRI GAATTC 2 cut(s) 57, 851
EcoRII CCWGG 2 cut(s) 394, 1114
EcoT14I CCWWGG 2 cut(s) 26, 1209
EcoT22I ATGCAT 1 cut(s) 308
ErhI CCWWGG 2 cut(s) 26, 1209
FaeI CATG 2 cut(s) 1174, 1213
FalI AAGNNNNNCTT 4 cut(s) 225, 257, 777, 809
FaqI GGGAC 1 cut(s) 419
FatI CATG 2 cut(s) 1170, 1209
FbaI TGATCA 1 cut(s) 679
Fnu4HI GCNGC 1 cut(s) 798
FokI GGATG 3 cut(s) 377, 414, 1131
Fsp4HI GCNGC 1 cut(s) 798
GlaI GCGC 1 cut(s) 631
GluI GCNGC 1 cut(s) 798
GsuI CTGGAG 1 cut(s) 1098
HhaI GCGC 1 cut(s) 632
Hin1II CATG 2 cut(s) 1174, 1213
Hin6I GCGC 1 cut(s) 630
HinP1I GCGC 1 cut(s) 630
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 791
HinfI GANTC 5 cut(s) 149, 343, 533, 757, 766
HphI GGTGA 1 cut(s) 958
Hpy166II GTNNAC 2 cut(s) 9, 949
Hpy188I TCNGA 8 cut(s) 19, 36, 126, 156, 428, 1025, 1040, 1147
Hpy188III TCNNGA 5 cut(s) 54, 310, 469, 554, 812
Hpy8I GTNNAC 2 cut(s) 9, 949
Hpy99I CGWCG 2 cut(s) 143, 1158
HpyAV CCTTC 2 cut(s) 357, 745
HpyCH4III ACNGT 2 cut(s) 978, 1154
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 3 cut(s) 96, 306, 1122
HpyF3I CTNAG 2 cut(s) 153, 327
HpySE526I ACGT 1 cut(s) 5
Hsp92II CATG 2 cut(s) 1174, 1213
HspAI GCGC 1 cut(s) 630
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 7 cut(s) 12, 19, 31, 135, 214, 679, 1033
LmnI GCTCC 2 cut(s) 126, 870
Lsp1109I GCAGC 1 cut(s) 784
LweI GCATC 2 cut(s) 315, 1109
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 4 cut(s) 416, 559, 763, 896
MalI GATC 7 cut(s) 14, 21, 33, 137, 216, 681, 1035
MboI GATC 7 cut(s) 12, 19, 31, 135, 214, 679, 1033
MboII GAAGA 7 cut(s) 14, 49, 52, 155, 797, 925, 1143
MflI RGATCY 2 cut(s) 31, 214
MluCI AATT 2 cut(s) 57, 851
MlyI GAGTC 4 cut(s) 158, 527, 760, 766
MmeI TCCRAC 1 cut(s) 104
Mph1103I ATGCAT 1 cut(s) 308
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 7 cut(s) 89, 113, 131, 188, 204, 231, 462
MspR9I CCNGG 2 cut(s) 396, 1116
MvaI CCWGG 2 cut(s) 396, 1116
MvnI CGCG 3 cut(s) 164, 813, 987
NcoI CCATGG 1 cut(s) 1209
NdeII GATC 7 cut(s) 12, 19, 31, 135, 214, 679, 1033
NlaIII CATG 2 cut(s) 1174, 1213
NlaIV GGNNCC 2 cut(s) 407, 1215
NmuCI GTSAC 3 cut(s) 559, 763, 896
NruI TCGCGA 1 cut(s) 813
NsiI ATGCAT 1 cut(s) 308
PcsI WCGNNNNNNNCGW 1 cut(s) 1162
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 343
PfoI TCCNGGA 1 cut(s) 1114
PkrI GCNGC 1 cut(s) 799
PleI GAGTC 4 cut(s) 157, 527, 760, 765
PpsI GAGTC 4 cut(s) 157, 527, 760, 765
Psp6I CCWGG 2 cut(s) 394, 1114
PspGI CCWGG 2 cut(s) 394, 1114
PspN4I GGNNCC 2 cut(s) 407, 1215
PspPI GGNCC 2 cut(s) 406, 719
PsuI RGATCY 2 cut(s) 31, 214
RruI TCGCGA 1 cut(s) 813
RsaI GTAC 1 cut(s) 922
RsaNI GTAC 1 cut(s) 921
SaqAI TTAA 7 cut(s) 89, 113, 131, 188, 204, 231, 462
SatI GCNGC 1 cut(s) 798
Sau3AI GATC 7 cut(s) 12, 19, 31, 135, 214, 679, 1033
Sau96I GGNCC 2 cut(s) 406, 719
SchI GAGTC 4 cut(s) 158, 527, 760, 766
ScrFI CCNGG 2 cut(s) 396, 1116
SfaNI GCATC 2 cut(s) 315, 1109
SfcI CTRYAG 1 cut(s) 222
SinI GGWCC 2 cut(s) 406, 719
SmlI CTYRAG 3 cut(s) 52, 469, 608
SmoI CTYRAG 3 cut(s) 52, 469, 608
Sse9I AATT 2 cut(s) 57, 851
SsiI CCGC 2 cut(s) 399, 722
SspI AATATT 1 cut(s) 48
StyD4I CCNGG 2 cut(s) 394, 1114
StyI CCWWGG 2 cut(s) 26, 1209
TaaI ACNGT 2 cut(s) 978, 1154
TaiI ACGT 1 cut(s) 8
TaqI TCGA 5 cut(s) 138, 531, 855, 1156, 1185
TasI AATT 2 cut(s) 57, 851
TatI WGTACW 1 cut(s) 920
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 7 cut(s) 89, 113, 131, 188, 204, 231, 462
Tru9I TTAA 7 cut(s) 89, 113, 131, 188, 204, 231, 462
TseFI GTSAC 3 cut(s) 559, 763, 896
TseI GCWGC 1 cut(s) 797
Tsp45I GTSAC 3 cut(s) 559, 763, 896
TspDTI ATGAA 6 cut(s) 272, 467, 531, 764, 925, 988
TspGWI ACGGA 2 cut(s) 51, 336
VpaK11BI GGWCC 2 cut(s) 406, 719
XapI RAATTY 2 cut(s) 57, 851
XmnI GAANNNNTTC 1 cut(s) 47
Zsp2I ATGCAT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.