AT2G39355

F-box LRR-repeat kelch-repeat protein At1g11620

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000186
Physical Location & Seq
Forward (+)
16436504 .. 16436833
330 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G39355.1

Sequence Viewer

Length: 330 bp
ATGGGATATTCGGAGCTAAGGTGGAGGGCTCTTGATGACGTCTTTCTCGGTTGCAACATACAATCTCGTGGGGTATCTTTAAAAGGGAATACTTATTGGATTGCATCAGAAGTCATCAAAGACTTTTCACTACTATTAAGTTTCGATTTCACAACCGAGAGATTTGGACGCCTGAATCTTCCCTTTCTACGTCTTGGTTATGAGATTTTGGCCTTATCAGTTGTTAAAGAAGAACAACTTTCAGTTTTGCAACAGAGATTGGATACATCAAGGGTAGAGATATGGGTGACTACCAACGATAAGATTGATCAAACCAAAGTCTTATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

109

Amino Acids

12.61

Weight (kDa)

5.4

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 7 - 107 7.2e-30 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
AcyI GRCGYC 2 cut(s) 39, 169
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
AoxI GGCC 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 298
BanII GRGCYC 1 cut(s) 31
BauI CACGAG 1 cut(s) 66
BciVI GTATCC 1 cut(s) 256
BclI TGATCA 1 cut(s) 307
BfuI GTATCC 1 cut(s) 256
BmsI GCATC 1 cut(s) 113
Bpu10I CCTNAGC 1 cut(s) 17
BsaHI GRCGYC 2 cut(s) 39, 169
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
BshFI GGCC 1 cut(s) 212
BsnI GGCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 307
BspANI GGCC 1 cut(s) 212
BssMI GATC 1 cut(s) 307
BssNI GRCGYC 2 cut(s) 39, 169
BssSI CACGAG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 66
BstACI GRCGYC 2 cut(s) 39, 169
BstDEI CTNAG 1 cut(s) 17
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BsuI GTATCC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 212
CseI GACGC 1 cut(s) 177
CviJI RGCY 3 cut(s) 16, 29, 212
CviKI_1 RGCY 3 cut(s) 16, 29, 212
DdeI CTNAG 1 cut(s) 17
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DraI TTTAAA 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 31
FaiI YATR 4 cut(s) 59, 201, 283, 328
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FbaI TGATCA 1 cut(s) 307
FriOI GRGCYC 1 cut(s) 31
HaeIII GGCC 1 cut(s) 212
HgaI GACGC 1 cut(s) 177
Hin1I GRCGYC 2 cut(s) 39, 169
HinfI GANTC 1 cut(s) 175
HphI GGTGA 1 cut(s) 298
Hpy188I TCNGA 2 cut(s) 13, 109
Hpy188III TCNNGA 1 cut(s) 32
HpyCH4IV ACGT 2 cut(s) 39, 190
HpyCH4V TGCA 3 cut(s) 54, 104, 250
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 2 cut(s) 39, 190
Hsp92I GRCGYC 2 cut(s) 39, 169
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 1 cut(s) 185
LweI GCATC 1 cut(s) 113
MaeII ACGT 2 cut(s) 39, 190
MaeIII GTNAC 1 cut(s) 286
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 2 cut(s) 170, 242
MhlI GDGCHC 1 cut(s) 31
MnlI CCTC 1 cut(s) 18
MseI TTAA 3 cut(s) 80, 137, 225
NdeII GATC 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 175
SaqAI TTAA 3 cut(s) 80, 137, 225
Sau3AI GATC 1 cut(s) 307
SduI GDGCHC 1 cut(s) 31
SetI ASST 4 cut(s) 18, 23, 42, 193
SfaNI GCATC 1 cut(s) 113
SgeI CNNG 8 cut(s) 44, 59, 78, 80, 169, 184, 206, 282
TaiI ACGT 2 cut(s) 42, 193
TaqI TCGA 1 cut(s) 144
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 3 cut(s) 80, 137, 225
Tru9I TTAA 3 cut(s) 80, 137, 225
TseFI GTSAC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 286
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.