AT3G17490
ERF Family

termination of mitochondrial transcription

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
5984827 .. 5985993
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17490.1

Sequence Viewer

Length: 1167 bp
ATGATGATGCCTCATCTTTCAGAGGATTTGGTAGAGGAGATACTCTCTAGGGTTCCGGCTATATCTCTAAAACGATTACGATATACTTGCAAACAATGGAATGCTTTGTTTAATGATCAAAGATTCAGTAAGAAGCACCGTGATAAAGCACCGAAGACATATCTGGGTCTCACATTGAAGGATTTTAGGATTTATTCAATGAGCTCAAATCTGCATGGACTTCTTCACAACAACAACATTGATCTACTTATGGAGTTCAAAGGTAAACTTAGCAGTCTAAACGATTTAAACGATTTCGAAATATCACAAATCTATCCCTGCGACGGTTTAATATTATGCTCCACGAAGCGTAACACTAGACTCGTGGTTTGGAACCCCTGTACCGGTCAAACCAGGTGGATCAAACGCAGGAATCGTAGGATGTGTGATACCTTTGCTTTTGGATATGACAACAGCAAGTCTTCTTGCCTTAATAACTACAAAATCCTGAGGGTTTGCGAAAAAATAAAAGGACAGCAGTTTGAGTATGAAATCTTTGAGTTTAGCTCTAATTCATGGAGGGTTCTCGATGTTAATCCCAACTGCATCATAGAAGGTAGGAGTGTGTCTGTCAAAGGAAATAGTTATTGGTTTGCTACAATTACAAAAACACACTACTTCATACGACGTTTTGATTTTTCATCAGAAACGTTTCAGAAACTTCCTCTTCCGTTTCACATATTTGACTACAATGATTCTAGGGCTCTATCAGCCTTTAGAGAAGAACAACTCTCAGTGTTACATCAGAGTTTTGATACAGAAAAGATGGATATATGGGTGACCAATAAAATTGATGAGACCACAGATTGGTCATGGAGCAAGTTCTTCACAGTGAGATTAATCAATAGGTTAGACTATCCTATTAGCATGATGATGAAGTCTCCCCTAAGTTTCTTCATCGATGAGAAAAAGAATATCATTTTGTGTTATGATAAACACAGAGAAAATACCTACAAGTCATTGGTATTAATTGTTGGGAAGGATAAAGTCTACAGAGAATTCTACTTTCCAGAATCATACGAATTAGGTAGGACATATCTATGCAACTATGTTCCAAGTTTAGTTCAAATCAAGCAAAGTGGACTGATATCTACAAGGAAAAGAAAGCGAAAAGATTTCTCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006355 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006914 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016236 GO:0019219 GO:0019222 GO:0019538 GO:0019843 GO:0019867 GO:0022607 GO:0022613 GO:0022618 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031966 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032270 GO:0032502 GO:0032543 GO:0034248 GO:0034250 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045892 GO:0045934 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0060255 GO:0061668 GO:0061919 GO:0065003 GO:0065007 GO:0070013 GO:0070129 GO:0070131 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903108 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

388

Amino Acids

46.17

Weight (kDa)

9.34

Isoelectric Point (pI)

52.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 44 8.2e-09 F-box domain
FBA_1 PF07734 57 - 370 4.2e-100 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 846
AccI GTMKAC 1 cut(s) 1029
AclI AACGTT 1 cut(s) 689
AclWI GGATC 1 cut(s) 407
AcsI RAATTY 1 cut(s) 1037
AfaI GTAC 1 cut(s) 382
AfiI CCNNNNNNNGG 3 cut(s) 323, 383, 846
AgeI ACCGGT 1 cut(s) 383
AgsI TTSAA 4 cut(s) 178, 198, 259, 1106
AjnI CCWGG 1 cut(s) 392
AjuI GAANNNNNNNTTGG 2 cut(s) 610, 642
AluBI AGCT 2 cut(s) 204, 546
AluI AGCT 2 cut(s) 204, 546
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 3 cut(s) 173, 830, 924
AlwI GGATC 1 cut(s) 407
ApoI RAATTY 1 cut(s) 1037
ArsI GACNNNNNNTTYG 2 cut(s) 351, 383
AseI ATTAAT 2 cut(s) 878, 1007
AsiGI ACCGGT 1 cut(s) 383
Asp700I GAANNNNTTC 1 cut(s) 690
AsuHPI GGTGA 1 cut(s) 829
AsuII TTCGAA 1 cut(s) 297
AxyI CCTNAGG 1 cut(s) 488
BaeI ACNNNNGTAYC 2 cut(s) 364, 397
BanII GRGCYC 2 cut(s) 206, 745
BauI CACGAG 1 cut(s) 362
BbsI GAAGAC 2 cut(s) 161, 453
Bbv12I GWGCWC 1 cut(s) 206
BccI CCATC 1 cut(s) 799
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BciT130I CCWGG 1 cut(s) 394
BclI TGATCA 1 cut(s) 115
BcoDI GTCTC 3 cut(s) 173, 830, 924
BfaI CTAG 3 cut(s) 48, 357, 738
BfmI CTRYAG 1 cut(s) 1030
Bme1390I CCNGG 1 cut(s) 394
BmiI GGNNCC 2 cut(s) 54, 374
BmrFI CCNGG 1 cut(s) 394
BmsI GCATC 1 cut(s) 594
BpiI GAAGAC 2 cut(s) 161, 453
BplI GAGNNNNNCTC 4 cut(s) 29, 61, 530, 562
Bpu14I TTCGAA 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 1144
Bsa29I ATCGAT 1 cut(s) 939
BsaBI GATNNNNATC 1 cut(s) 573
BsaI GGTCTC 2 cut(s) 173, 830
BsaWI WCCGGW 1 cut(s) 383
Bsc4I CCNNNNNNNGG 3 cut(s) 323, 383, 846
Bse118I RCCGGY 1 cut(s) 383
Bse21I CCTNAGG 1 cut(s) 488
Bse8I GATNNNNATC 1 cut(s) 573
BseBI CCWGG 1 cut(s) 394
BseCI ATCGAT 1 cut(s) 939
BseGI GGATG 1 cut(s) 426
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 3 cut(s) 323, 383, 846
BseMII CTCAG 2 cut(s) 479, 786
BseRI GAGGAG 1 cut(s) 50
BshTI ACCGGT 1 cut(s) 383
BshVI ATCGAT 1 cut(s) 939
BsiHKAI GWGCWC 1 cut(s) 206
BsiSI CCGG 2 cut(s) 56, 384
BslI CCNNNNNNNGG 3 cut(s) 323, 383, 846
BsmAI GTCTC 3 cut(s) 173, 830, 924
BsmI GAATGC 1 cut(s) 106
Bso31I GGTCTC 2 cut(s) 173, 830
Bsp119I TTCGAA 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 206, 745
Bsp143I GATC 3 cut(s) 115, 241, 399
BspCNI CTCAG 2 cut(s) 480, 785
BspDI ATCGAT 1 cut(s) 939
BspLI GGNNCC 2 cut(s) 54, 374
BspPI GGATC 1 cut(s) 407
BspT104I TTCGAA 1 cut(s) 297
BspTNI GGTCTC 2 cut(s) 173, 830
BsrFI RCCGGY 1 cut(s) 383
BssAI RCCGGY 1 cut(s) 383
BssMI GATC 3 cut(s) 115, 241, 399
BssSI CACGAG 1 cut(s) 362
Bst2BI CACGAG 1 cut(s) 362
Bst2UI CCWGG 1 cut(s) 394
Bst4CI ACNGT 3 cut(s) 140, 326, 871
Bst6I CTCTTC 1 cut(s) 711
BstBI TTCGAA 1 cut(s) 297
BstDEI CTNAG 4 cut(s) 269, 488, 772, 926
BstEII GGTNACC 1 cut(s) 817
BstF5I GGATG 1 cut(s) 426
BstKTI GATC 3 cut(s) 118, 244, 402
BstMAI GTCTC 3 cut(s) 173, 830, 924
BstMBI GATC 3 cut(s) 115, 241, 399
BstMWI GCNNNNNNNGC 1 cut(s) 749
BstNI CCWGG 1 cut(s) 394
BstPI GGTNACC 1 cut(s) 817
BstSCI CCNGG 1 cut(s) 392
BstSFI CTRYAG 1 cut(s) 1030
BstV2I GAAGAC 2 cut(s) 161, 453
Bsu15I ATCGAT 1 cut(s) 939
Bsu36I CCTNAGG 1 cut(s) 488
BsuTUI ATCGAT 1 cut(s) 939
BtsCI GGATG 1 cut(s) 426
BtsIMutI CAGTG 2 cut(s) 780, 876
Cfr10I RCCGGY 1 cut(s) 383
ClaI ATCGAT 1 cut(s) 939
CsiI ACCWGGT 1 cut(s) 392
Csp6I GTAC 1 cut(s) 381
CspAI ACCGGT 1 cut(s) 383
CspCI CAANNNNNGTGG 4 cut(s) 377, 412, 1099, 1134
CviAII CATG 4 cut(s) 215, 555, 852, 907
CviJI RGCY 5 cut(s) 59, 204, 546, 743, 752
CviKI_1 RGCY 5 cut(s) 59, 204, 546, 743, 752
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 4 cut(s) 269, 488, 772, 926
DpnI GATC 3 cut(s) 117, 243, 401
DpnII GATC 3 cut(s) 115, 241, 399
DraI TTTAAA 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
Ecl136II GAGCTC 1 cut(s) 204
Eco24I GRGCYC 2 cut(s) 206, 745
Eco31I GGTCTC 2 cut(s) 173, 830
Eco32I GATATC 1 cut(s) 1128
Eco53kI GAGCTC 1 cut(s) 204
Eco81I CCTNAGG 1 cut(s) 488
Eco91I GGTNACC 1 cut(s) 817
EcoICRI GAGCTC 1 cut(s) 204
EcoO65I GGTNACC 1 cut(s) 817
EcoRI GAATTC 1 cut(s) 1037
EcoRII CCWGG 1 cut(s) 392
EcoRV GATATC 1 cut(s) 1128
EcoT38I GRGCYC 2 cut(s) 206, 745
FaeI CATG 4 cut(s) 218, 558, 855, 910
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FatI CATG 4 cut(s) 214, 554, 851, 906
FbaI TGATCA 1 cut(s) 115
FblI GTMKAC 1 cut(s) 1029
FokI GGATG 1 cut(s) 433
FriOI GRGCYC 2 cut(s) 206, 745
FspBI CTAG 3 cut(s) 48, 357, 738
HapII CCGG 2 cut(s) 56, 384
Hin1II CATG 4 cut(s) 218, 558, 855, 910
HinfI GANTC 5 cut(s) 123, 360, 412, 734, 1052
HpaII CCGG 2 cut(s) 56, 384
HphI GGTGA 1 cut(s) 829
Hpy166II GTNNAC 3 cut(s) 266, 1030, 1121
Hpy188I TCNGA 4 cut(s) 22, 685, 696, 786
Hpy188III TCNNGA 3 cut(s) 487, 566, 1049
Hpy8I GTNNAC 3 cut(s) 266, 1030, 1121
Hpy99I CGWCG 2 cut(s) 326, 669
HpyAV CCTTC 3 cut(s) 172, 587, 1012
HpyCH4III ACNGT 3 cut(s) 140, 326, 871
HpyCH4IV ACGT 2 cut(s) 667, 689
HpyCH4V TGCA 4 cut(s) 90, 214, 585, 1083
HpyF10VI GCNNNNNNNGC 1 cut(s) 749
HpyF3I CTNAG 4 cut(s) 269, 488, 772, 926
HpySE526I ACGT 2 cut(s) 667, 689
Hsp92II CATG 4 cut(s) 218, 558, 855, 910
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 3 cut(s) 115, 241, 399
LmnI GCTCC 2 cut(s) 344, 855
LweI GCATC 1 cut(s) 594
MabI ACCWGGT 1 cut(s) 392
MaeI CTAG 3 cut(s) 48, 357, 738
MaeII ACGT 2 cut(s) 667, 689
MaeIII GTNAC 3 cut(s) 350, 777, 817
MalI GATC 3 cut(s) 117, 243, 401
MboI GATC 3 cut(s) 115, 241, 399
MboII GAAGA 7 cut(s) 166, 215, 453, 698, 773, 856, 925
MhlI GDGCHC 2 cut(s) 206, 745
MluCI AATT 6 cut(s) 550, 639, 828, 1008, 1037, 1061
MlyI GAGTC 1 cut(s) 354
MnlI CCTC 6 cut(s) 16, 21, 28, 483, 552, 714
MroXI GAANNNNTTC 1 cut(s) 690
MseI TTAA 8 cut(s) 111, 287, 329, 471, 573, 878, 1007, 1165
MslI CAYNNNNRTG 2 cut(s) 911, 1078
MspI CCGG 2 cut(s) 56, 384
MspR9I CCNGG 1 cut(s) 394
Mva1269I GAATGC 1 cut(s) 106
MvaI CCWGG 1 cut(s) 394
MwoI GCNNNNNNNGC 1 cut(s) 749
NdeII GATC 3 cut(s) 115, 241, 399
NlaIII CATG 4 cut(s) 218, 558, 855, 910
NlaIV GGNNCC 2 cut(s) 54, 374
NmuCI GTSAC 1 cut(s) 817
NspV TTCGAA 1 cut(s) 297
PcsI WCGNNNNNNNCGW 2 cut(s) 288, 412
PctI GAATGC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 690
PfeI GAWTC 4 cut(s) 123, 412, 734, 1052
PflMI CCANNNNNTGG 1 cut(s) 846
PinAI ACCGGT 1 cut(s) 383
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
PshBI ATTAAT 2 cut(s) 878, 1007
Psp124BI GAGCTC 1 cut(s) 206
Psp1406I AACGTT 1 cut(s) 689
Psp6I CCWGG 1 cut(s) 392
PspEI GGTNACC 1 cut(s) 817
PspGI CCWGG 1 cut(s) 392
PspN4I GGNNCC 2 cut(s) 54, 374
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
RseI CAYNNNNRTG 2 cut(s) 911, 1078
SacI GAGCTC 1 cut(s) 206
SaqAI TTAA 8 cut(s) 111, 287, 329, 471, 573, 878, 1007, 1165
Sau3AI GATC 3 cut(s) 115, 241, 399
SchI GAGTC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 394
SduI GDGCHC 2 cut(s) 206, 745
SexAI ACCWGGT 1 cut(s) 392
SfaNI GCATC 1 cut(s) 594
SfcI CTRYAG 1 cut(s) 1030
SfuI TTCGAA 1 cut(s) 297
SmiMI CAYNNNNRTG 2 cut(s) 911, 1078
SmlI CTYRAG 1 cut(s) 1159
SmoI CTYRAG 1 cut(s) 1159
Sse9I AATT 6 cut(s) 550, 639, 828, 1008, 1037, 1061
SspI AATATT 1 cut(s) 333
SspMI CTAG 3 cut(s) 48, 357, 738
SstI GAGCTC 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 392
TaaI ACNGT 3 cut(s) 140, 326, 871
TaiI ACGT 2 cut(s) 670, 692
TaqI TCGA 3 cut(s) 297, 567, 939
TasI AATT 6 cut(s) 550, 639, 828, 1008, 1037, 1061
TfiI GAWTC 4 cut(s) 123, 412, 734, 1052
Tru1I TTAA 8 cut(s) 111, 287, 329, 471, 573, 878, 1007, 1165
Tru9I TTAA 8 cut(s) 111, 287, 329, 471, 573, 878, 1007, 1165
TscAI CASTG 2 cut(s) 780, 876
TseFI GTSAC 1 cut(s) 817
Tsp45I GTSAC 1 cut(s) 817
TspDTI ATGAA 6 cut(s) 543, 543, 649, 669, 925, 929
TspGWI ACGGA 1 cut(s) 699
TspRI CASTG 2 cut(s) 780, 876
Van91I CCANNNNNTGG 1 cut(s) 846
VspI ATTAAT 2 cut(s) 878, 1007
XapI RAATTY 1 cut(s) 1037
XmiI GTMKAC 1 cut(s) 1029
XmnI GAANNNNTTC 1 cut(s) 690
XspI CTAG 3 cut(s) 48, 357, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.