AT1G59630

Weak chloroplast movement under blue light

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Reverse (-)
21907177 .. 21907955
779 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G59630.1

Sequence Viewer

Length: 720 bp
ATGGAAGACTTTGATGTAGGAGGCATGGTTTGGAACCCGTTGTTGAGAACGACTAAATTGATTGCGAAGGATAAGCAAATATGTGGCAAGAGCATGGGTTACGATGGTACTAAACCCGAAAAGAGTTACAAGATTATTGGACGGTGCTTTACTAATGCGATCTATAGAGTTGCAGTCTTGGAACTTGCAACCAACGCGTGGAAGGTACTCATTGTCCCAGATCTCACGAAGAGTTACAAATATCCCGACACTGGTCAGTGTTTCATCGAAATGCTCGATCTTTCGAAAGAGGTAATAAAGATCTTTTGTATCCTACCGTGTAAGGCGAATAAAAGTACTTCCAATACTCGTATCCTCTCGATTTACAAGGGAGATCGGTTTTCAGTGTTACAACAAAGCAAAAGAACAGGGGAGATTAACATTTGGGTGACAGAGAAGGAAATTGGTAACGGGGATAATGGAGACGATGTGGTGTGGATGAAGTTCATGACTCTCTCAAGACCTGACTTCCCCATATTACTTAGTCACATCTCTACAAGTTACTTTGTCGATAATGATATCTATGGCAAGAGCTTGGTTCTGTGTTGTCCTAGCACGAAACCTAGACAAGCTTGGGTCTATATTGTGAGGGGAGATCTGTGCAAAAAGATTAAGATAGATGGAGTGCAATGTAGGTTTCAGTCCTCTGTTTATGTTCCCAGTTTGATCACCATAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PPR_2 WEMBL

Protein Analysis

239

Amino Acids

27.11

Weight (kDa)

9.04

Isoelectric Point (pI)

26.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 7 - 72 2.7e-10 F-box associated beta propeller domain
FBA_1 PF07734 84 - 238 5.5e-30 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 198
AccII CGCG 1 cut(s) 197
AfaI GTAC 3 cut(s) 109, 207, 337
AfiI CCNNNNNNNGG 2 cut(s) 198, 251
AflIII ACRYGT 1 cut(s) 195
AluBI AGCT 2 cut(s) 573, 611
AluI AGCT 2 cut(s) 573, 611
Alw26I GTCTC 1 cut(s) 456
AsuHPI GGTGA 2 cut(s) 439, 700
AsuII TTCGAA 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 12
BccI CCATC 2 cut(s) 98, 653
BciVI GTATCC 2 cut(s) 320, 362
BclI TGATCA 1 cut(s) 705
BcoDI GTCTC 1 cut(s) 456
BfaI CTAG 2 cut(s) 591, 603
BfmI CTRYAG 1 cut(s) 163
BfuI GTATCC 2 cut(s) 320, 362
BglII AGATCT 3 cut(s) 220, 300, 634
BmcAI AGTACT 1 cut(s) 337
BmiI GGNNCC 1 cut(s) 35
BmrI ACTGGG 1 cut(s) 693
BmuI ACTGGG 1 cut(s) 693
BoxI GACNNNNGTC 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 12
Bpu14I TTCGAA 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 481
BsaXI ACNNNNNCTCC 4 cut(s) 12, 42, 453, 483
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 251
Bse1I ACTGG 2 cut(s) 256, 699
Bse3DI GCAATG 1 cut(s) 674
BseGI GGATG 1 cut(s) 483
BseLI CCNNNNNNNGG 2 cut(s) 198, 251
BseMI GCAATG 1 cut(s) 674
BseNI ACTGG 2 cut(s) 256, 699
Bsh1236I CGCG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 198, 251
BsmAI GTCTC 1 cut(s) 456
BsmBI CGTCTC 1 cut(s) 456
BsmFI GGGAC 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 284
Bsp143I GATC 7 cut(s) 159, 220, 277, 300, 373, 634, 705
BspFNI CGCG 1 cut(s) 197
BspHI TCATGA 1 cut(s) 486
BspLI GGNNCC 1 cut(s) 35
BspT104I TTCGAA 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 674
BsrI ACTGG 2 cut(s) 256, 699
BssMI GATC 7 cut(s) 159, 220, 277, 300, 373, 634, 705
Bst4CI ACNGT 2 cut(s) 144, 318
Bst6I CTCTTC 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 521
BstF5I GGATG 1 cut(s) 483
BstFNI CGCG 1 cut(s) 197
BstKTI GATC 7 cut(s) 162, 223, 280, 303, 376, 637, 708
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 7 cut(s) 159, 220, 277, 300, 373, 634, 705
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstPAI GACNNNNGTC 1 cut(s) 252
BstSFI CTRYAG 1 cut(s) 163
BstUI CGCG 1 cut(s) 197
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 3 cut(s) 220, 300, 634
BstYI RGATCY 3 cut(s) 220, 300, 634
BsuI GTATCC 2 cut(s) 320, 362
BtsCI GGATG 1 cut(s) 483
BtsIMutI CAGTG 3 cut(s) 249, 263, 390
CciI TCATGA 1 cut(s) 486
Csp6I GTAC 3 cut(s) 108, 206, 336
CviAII CATG 3 cut(s) 25, 94, 487
CviJI RGCY 2 cut(s) 573, 611
CviKI_1 RGCY 2 cut(s) 573, 611
CviQI GTAC 3 cut(s) 108, 206, 336
DdeI CTNAG 1 cut(s) 521
DpnI GATC 7 cut(s) 161, 222, 279, 302, 375, 636, 707
DpnII GATC 7 cut(s) 159, 220, 277, 300, 373, 634, 705
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco32I GATATC 1 cut(s) 559
EcoRV GATATC 1 cut(s) 559
Esp3I CGTCTC 1 cut(s) 456
FaeI CATG 3 cut(s) 28, 97, 490
FaqI GGGAC 1 cut(s) 200
FatI CATG 3 cut(s) 24, 93, 486
FbaI TGATCA 1 cut(s) 705
FokI GGATG 1 cut(s) 490
FspBI CTAG 2 cut(s) 591, 603
Hin1II CATG 3 cut(s) 28, 97, 490
HindIII AAGCTT 1 cut(s) 609
HinfI GANTC 1 cut(s) 490
HphI GGTGA 2 cut(s) 439, 700
Hpy188III TCNNGA 5 cut(s) 226, 245, 358, 487, 498
HpyAV CCTTC 3 cut(s) 61, 196, 430
HpyCH4III ACNGT 2 cut(s) 144, 318
HpyCH4V TGCA 4 cut(s) 173, 188, 642, 667
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 521
Hsp92II CATG 3 cut(s) 28, 97, 490
Ksp22I TGATCA 1 cut(s) 705
Kzo9I GATC 7 cut(s) 159, 220, 277, 300, 373, 634, 705
LpnPI CCDG 5 cut(s) 231, 237, 393, 516, 712
MaeI CTAG 2 cut(s) 591, 603
MaeIII GTNAC 8 cut(s) 98, 125, 233, 387, 427, 446, 524, 539
MalI GATC 7 cut(s) 161, 222, 279, 302, 375, 636, 707
MboI GATC 7 cut(s) 159, 220, 277, 300, 373, 634, 705
MboII GAAGA 2 cut(s) 17, 241
MflI RGATCY 3 cut(s) 220, 300, 634
MluCI AATT 2 cut(s) 56, 441
MluI ACGCGT 1 cut(s) 195
MlyI GAGTC 1 cut(s) 484
MnlI CCTC 5 cut(s) 14, 283, 365, 621, 694
MseI TTAA 2 cut(s) 417, 651
MslI CAYNNNNRTG 2 cut(s) 269, 425
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 7 cut(s) 159, 220, 277, 300, 373, 634, 705
NlaIII CATG 3 cut(s) 28, 97, 490
NlaIV GGNNCC 1 cut(s) 35
NmuCI GTSAC 2 cut(s) 427, 524
NspV TTCGAA 1 cut(s) 284
PagI TCATGA 1 cut(s) 486
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PflMI CCANNNNNTGG 1 cut(s) 198
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
PshAI GACNNNNGTC 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 35
PsuI RGATCY 3 cut(s) 220, 300, 634
RsaI GTAC 3 cut(s) 109, 207, 337
RsaNI GTAC 3 cut(s) 108, 206, 336
RseI CAYNNNNRTG 2 cut(s) 269, 425
SaqAI TTAA 2 cut(s) 417, 651
Sau3AI GATC 7 cut(s) 159, 220, 277, 300, 373, 634, 705
ScaI AGTACT 1 cut(s) 337
SchI GAGTC 1 cut(s) 484
SetI ASST 7 cut(s) 207, 294, 505, 575, 604, 613, 677
SfcI CTRYAG 1 cut(s) 163
SfuI TTCGAA 1 cut(s) 284
SmiMI CAYNNNNRTG 2 cut(s) 269, 425
SmlI CTYRAG 1 cut(s) 496
SmoI CTYRAG 1 cut(s) 496
Sse9I AATT 2 cut(s) 56, 441
SspMI CTAG 2 cut(s) 591, 603
TaaI ACNGT 2 cut(s) 144, 318
TaqI TCGA 5 cut(s) 267, 276, 284, 359, 549
TasI AATT 2 cut(s) 56, 441
TatI WGTACW 1 cut(s) 335
Tru1I TTAA 2 cut(s) 417, 651
Tru9I TTAA 2 cut(s) 417, 651
TscAI CASTG 3 cut(s) 256, 263, 390
TseFI GTSAC 2 cut(s) 427, 524
Tsp45I GTSAC 2 cut(s) 427, 524
TspDTI ATGAA 3 cut(s) 253, 475, 494
TspRI CASTG 3 cut(s) 256, 263, 390
Van91I CCANNNNNTGG 1 cut(s) 198
XspI CTAG 2 cut(s) 591, 603
ZrmI AGTACT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.