AT3G13680

ABC transporter E family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
4477289 .. 4478751
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13680.1

Sequence Viewer

Length: 1188 bp
ATGACGACCATGGGCGATCTTCCAGGCGATTTGGTAGAGGAGATACTCTCTAGGGTTCCGCTGACATCTCTGAGGGCTATACGATCTACTTGCCAAAAGTGGAACTCTTTATCGAAAAGTCAGATTTGTGGTAGAAAAGCAACAGCAGCAGAGAATAAGTTTCTGGGGTTTATGATGAAGGATTCAAGGGTTTGTTCAATGAAATTTGATCTCCAAGGAATCAGAAACGACGACGGGGAGTTGGTTGAGCCATCTATAAAGCAAGTAAGTAAACTCGATCAAATCGAGGTCTCTCAAGTTTTTCACTGTGACGGTTTAGTCCTATGCATCATTAAGGACAACACAGGGCTCTTGGTATGGAACCCTTATTTGGGGCAAACTAGGTGGATCCATCCGAGAAACAATTACCAGATAGAAGATAGGTATGCTCTTGGATATGATAACAACCGTAACCACAAAATATTGAGGATTTTCGATTTGTATCCAAGCAGCAACCGCGTTTTTGGGTACGAAGTCTACGATTTTAGCTCTAATTCATGGAAGGTTCTTGATGTCATTCCTGAGTGGGATATACAGTCTCATTTTCGTGGCGCGTCTTTGAAAGGGAATGCTTATTTTCCTGCGCAAAAGAAAGAAACAGTGGGAGGAATAAAGACAATAAATATTGAAGATGTTCTACTTTGTTTCGATTTTACAAGGGAGAGATTTGGACCGCCTCTGCCACTGCCGTTTCACTCTTACAATGCAGACTTTTTTGTGTCTCTAGCTTGTGTTAGGGAAGAGCAGCTCGCTGTGTTATATCAACGCTGGGGGGCATTTGAGACAATCGAGATTTGTGTTACAAATAAGATTGATCCCAATACGGTTTCGTGGAGCAAGTTTTTGATAACGTCCACTGGTTTTCCGGTTGACACTTTTTCTGGGAGCTTTTTCATTGATGAGGAGAAGAAAGTTGCTGTGGTTTTTGATTTAGATAGATATAAACCGACTGAGACCTGTCGCTACCAAATAGTTTATATTATTGGACAAGATGAATACTTCAAATCTGTCAACATGGGAGTTGCCCCAAATATCGCGAAGAACTCGTACCAAGCTTACTGTGTTCCACTTGTGTGCTCTTCTTCCTATGTTCCAAGCTTAGTTCAACTACAAATCAACAAACCGGGCAAAAGGAAAGAAAGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran F-box FBA_1 Fer4 RLI

Protein Analysis

395

Amino Acids

45.17

Weight (kDa)

6.94

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 43 2.6e-08 F-box domain
FBA_1 PF07734 56 - 383 1.5e-108 F-box associated beta propeller domain
FBA_3 PF08268 98 - 244 6.8e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
Acc16I TGCGCA 1 cut(s) 624
AccI GTMKAC 1 cut(s) 516
AccII CGCG 3 cut(s) 498, 593, 1076
AciI CCGC 3 cut(s) 59, 496, 713
AclWI GGATC 3 cut(s) 382, 395, 848
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 2 cut(s) 509, 1088
AfiI CCNNNNNNNGG 2 cut(s) 370, 371
AgsI TTSAA 6 cut(s) 186, 198, 601, 668, 1042, 1145
AjnI CCWGG 1 cut(s) 22
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AleI CACNNNNGTG 1 cut(s) 1111
AluBI AGCT 6 cut(s) 528, 767, 787, 927, 1094, 1137
AluI AGCT 6 cut(s) 528, 767, 787, 927, 1094, 1137
Alw21I GWGCWC 1 cut(s) 1118
Alw26I GTCTC 5 cut(s) 295, 582, 765, 815, 986
AlwI GGATC 3 cut(s) 382, 395, 848
ApeKI GCWGC 3 cut(s) 146, 489, 784
ApoI RAATTY 1 cut(s) 203
Asp700I GAANNNNTTC 1 cut(s) 672
AspLEI GCGC 2 cut(s) 593, 625
AspS9I GGNCC 1 cut(s) 710
AsuC2I CCSGG 1 cut(s) 1164
AvaII GGWCC 1 cut(s) 710
BamHI GGATCC 1 cut(s) 387
BanII GRGCYC 1 cut(s) 351
BarI GAAGNNNNNNTAC 4 cut(s) 660, 692, 1070, 1102
Bbv12I GWGCWC 1 cut(s) 1118
BbvI GCAGC 3 cut(s) 158, 501, 796
BccI CCATC 2 cut(s) 259, 399
BceAI ACGGC 1 cut(s) 712
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BciT130I CCWGG 1 cut(s) 24
BciVI GTATCC 1 cut(s) 492
BcnI CCSGG 1 cut(s) 1164
BcoDI GTCTC 5 cut(s) 295, 582, 765, 815, 986
BfaI CTAG 4 cut(s) 51, 381, 764, 1186
BfuI GTATCC 1 cut(s) 492
BisI GCNGC 3 cut(s) 147, 490, 785
BlsI GCNGC 3 cut(s) 148, 491, 786
Bme1390I CCNGG 2 cut(s) 24, 1164
Bme18I GGWCC 1 cut(s) 710
BmgT120I GGNCC 1 cut(s) 710
BmiI GGNNCC 3 cut(s) 57, 362, 389
BmrFI CCNGG 2 cut(s) 24, 1164
BmsI GCATC 1 cut(s) 336
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpuEI CTTGAG 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 1164
BsaBI GATNNNNATC 1 cut(s) 480
BsaI GGTCTC 2 cut(s) 295, 986
BsaJI CCNNGG 2 cut(s) 9, 214
BsaWI WCCGGW 1 cut(s) 904
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 371
Bse1I ACTGG 1 cut(s) 901
Bse8I GATNNNNATC 1 cut(s) 480
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 9, 214
BseGI GGATG 1 cut(s) 391
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 2 cut(s) 370, 371
BseMII CTCAG 3 cut(s) 62, 552, 981
BseNI ACTGG 1 cut(s) 901
BseRI GAGGAG 2 cut(s) 53, 956
BseXI GCAGC 3 cut(s) 158, 501, 796
BseYI CCCAGC 1 cut(s) 807
Bsh1236I CGCG 3 cut(s) 498, 593, 1076
BsiHKAI GWGCWC 1 cut(s) 1118
BsiSI CCGG 2 cut(s) 905, 1163
BslI CCNNNNNNNGG 2 cut(s) 370, 371
BsmAI GTCTC 5 cut(s) 295, 582, 765, 815, 986
BsmI GAATGC 1 cut(s) 613
Bso31I GGTCTC 2 cut(s) 295, 986
Bsp1286I GDGCHC 2 cut(s) 351, 1118
Bsp143I GATC 6 cut(s) 16, 83, 208, 277, 387, 853
Bsp19I CCATGG 1 cut(s) 9
Bsp68I TCGCGA 1 cut(s) 1076
BspACI CCGC 3 cut(s) 59, 496, 713
BspCNI CTCAG 3 cut(s) 63, 553, 982
BspFNI CGCG 3 cut(s) 498, 593, 1076
BspLI GGNNCC 3 cut(s) 57, 362, 389
BspPI GGATC 3 cut(s) 382, 395, 848
BspQI GCTCTTC 2 cut(s) 774, 1123
BspTNI GGTCTC 2 cut(s) 295, 986
BsrI ACTGG 1 cut(s) 901
BssECI CCNNGG 2 cut(s) 9, 214
BssMI GATC 6 cut(s) 16, 83, 208, 277, 387, 853
BssT1I CCWWGG 2 cut(s) 9, 214
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 7 cut(s) 308, 314, 449, 576, 640, 865, 1100
Bst6I CTCTTC 2 cut(s) 774, 1123
BstC8I GCNNGC 1 cut(s) 789
BstDEI CTNAG 4 cut(s) 71, 561, 990, 1138
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 391
BstFNI CGCG 3 cut(s) 498, 593, 1076
BstHHI GCGC 2 cut(s) 593, 625
BstKTI GATC 6 cut(s) 19, 86, 211, 280, 390, 856
BstMAI GTCTC 5 cut(s) 295, 582, 765, 815, 986
BstMBI GATC 6 cut(s) 16, 83, 208, 277, 387, 853
BstMWI GCNNNNNNNGC 2 cut(s) 146, 495
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 2 cut(s) 22, 1162
BstUI CGCG 3 cut(s) 498, 593, 1076
BstV1I GCAGC 3 cut(s) 158, 501, 796
BstX2I RGATCY 1 cut(s) 387
BstYI RGATCY 1 cut(s) 387
BsuI GTATCC 1 cut(s) 492
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 1 cut(s) 391
BtsI GCAGTG 1 cut(s) 722
BtsIMutI CAGTG 4 cut(s) 304, 645, 722, 894
BtuMI TCGCGA 1 cut(s) 1076
Cac8I GCNNGC 1 cut(s) 789
CfoI GCGC 2 cut(s) 593, 625
Cfr13I GGNCC 1 cut(s) 710
CseI GACGC 1 cut(s) 582
Csp6I GTAC 2 cut(s) 508, 1087
CspCI CAANNNNNGTGG 2 cut(s) 365, 400
CviAII CATG 3 cut(s) 10, 537, 1054
CviJI RGCY 9 cut(s) 77, 250, 349, 528, 767, 787, 927, 1094, 1137
CviKI_1 RGCY 9 cut(s) 77, 250, 349, 528, 767, 787, 927, 1094, 1137
CviQI GTAC 2 cut(s) 508, 1087
DdeI CTNAG 4 cut(s) 71, 561, 990, 1138
DpnI GATC 6 cut(s) 18, 85, 210, 279, 389, 855
DpnII GATC 6 cut(s) 16, 83, 208, 277, 387, 853
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
Eam1104I CTCTTC 2 cut(s) 774, 1123
EarI CTCTTC 2 cut(s) 774, 1123
Eco130I CCWWGG 2 cut(s) 9, 214
Eco24I GRGCYC 1 cut(s) 351
Eco31I GGTCTC 2 cut(s) 295, 986
Eco47I GGWCC 1 cut(s) 710
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 2 cut(s) 9, 214
EcoT22I ATGCAT 1 cut(s) 329
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 2 cut(s) 9, 214
FaeI CATG 3 cut(s) 13, 540, 1057
FatI CATG 3 cut(s) 9, 536, 1053
FblI GTMKAC 1 cut(s) 516
Fnu4HI GCNGC 3 cut(s) 147, 490, 785
FokI GGATG 1 cut(s) 378
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 3 cut(s) 147, 490, 785
FspBI CTAG 4 cut(s) 51, 381, 764, 1186
FspI TGCGCA 1 cut(s) 624
GlaI GCGC 2 cut(s) 592, 624
GluI GCNGC 3 cut(s) 147, 490, 785
GsaI CCCAGC 1 cut(s) 811
HapII CCGG 2 cut(s) 905, 1163
HgaI GACGC 1 cut(s) 582
HhaI GCGC 2 cut(s) 593, 625
Hin1II CATG 3 cut(s) 13, 540, 1057
Hin6I GCGC 2 cut(s) 591, 623
HinP1I GCGC 2 cut(s) 591, 623
HincII GTYRAC 2 cut(s) 910, 1051
HindII GTYRAC 2 cut(s) 910, 1051
HindIII AAGCTT 2 cut(s) 1092, 1135
HinfI GANTC 2 cut(s) 182, 219
HpaII CCGG 2 cut(s) 905, 1163
Hpy166II GTNNAC 5 cut(s) 272, 517, 894, 910, 1051
Hpy188I TCNGA 4 cut(s) 72, 123, 224, 396
Hpy188III TCNNGA 4 cut(s) 548, 560, 829, 1075
Hpy8I GTNNAC 5 cut(s) 272, 517, 894, 910, 1051
Hpy99I CGWCG 2 cut(s) 233, 236
HpyAV CCTTC 2 cut(s) 172, 535
HpyCH4III ACNGT 7 cut(s) 308, 314, 449, 576, 640, 865, 1100
HpyCH4IV ACGT 1 cut(s) 890
HpyCH4V TGCA 2 cut(s) 327, 746
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 495
HpyF3I CTNAG 4 cut(s) 71, 561, 990, 1138
HpySE526I ACGT 1 cut(s) 890
Hsp92II CATG 3 cut(s) 13, 540, 1057
HspAI GCGC 2 cut(s) 591, 623
Kzo9I GATC 6 cut(s) 16, 83, 208, 277, 387, 853
LguI GCTCTTC 2 cut(s) 774, 1123
LmnI GCTCC 2 cut(s) 873, 924
Lsp1109I GCAGC 3 cut(s) 158, 501, 796
LweI GCATC 1 cut(s) 336
MaeI CTAG 4 cut(s) 51, 381, 764, 1186
MaeII ACGT 1 cut(s) 890
MaeIII GTNAC 4 cut(s) 308, 449, 838, 1181
MalI GATC 6 cut(s) 18, 85, 210, 279, 389, 855
MboI GATC 6 cut(s) 16, 83, 208, 277, 387, 853
MboII GAAGA 8 cut(s) 11, 428, 680, 791, 958, 1090, 1110, 1113
MflI RGATCY 1 cut(s) 387
MhlI GDGCHC 2 cut(s) 351, 1118
MluCI AATT 3 cut(s) 203, 403, 532
MnlI CCTC 7 cut(s) 31, 66, 280, 459, 638, 726, 934
Mph1103I ATGCAT 1 cut(s) 329
MroXI GAANNNNTTC 1 cut(s) 672
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 2 cut(s) 585, 1111
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 2 cut(s) 905, 1163
MspR9I CCNGG 2 cut(s) 24, 1164
Mva1269I GAATGC 1 cut(s) 613
MvaI CCWGG 1 cut(s) 24
MvnI CGCG 3 cut(s) 498, 593, 1076
MwoI GCNNNNNNNGC 2 cut(s) 146, 495
NciI CCSGG 1 cut(s) 1164
NcoI CCATGG 1 cut(s) 9
NdeII GATC 6 cut(s) 16, 83, 208, 277, 387, 853
NlaIII CATG 3 cut(s) 13, 540, 1057
NlaIV GGNNCC 3 cut(s) 57, 362, 389
NmuCI GTSAC 1 cut(s) 308
NruI TCGCGA 1 cut(s) 1076
NsbI TGCGCA 1 cut(s) 624
NsiI ATGCAT 1 cut(s) 329
OliI CACNNNNGTG 1 cut(s) 1111
PciSI GCTCTTC 2 cut(s) 774, 1123
PcsI WCGNNNNNNNCGW 2 cut(s) 282, 516
PctI GAATGC 1 cut(s) 613
PdmI GAANNNNTTC 1 cut(s) 672
PfeI GAWTC 2 cut(s) 182, 219
PkrI GCNGC 3 cut(s) 148, 491, 786
Psp6I CCWGG 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 807
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 3 cut(s) 57, 362, 389
PspPI GGNCC 1 cut(s) 710
PsuI RGATCY 1 cut(s) 387
RruI TCGCGA 1 cut(s) 1076
RsaI GTAC 2 cut(s) 509, 1088
RsaNI GTAC 2 cut(s) 508, 1087
RseI CAYNNNNRTG 2 cut(s) 585, 1111
SapI GCTCTTC 2 cut(s) 774, 1123
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 3 cut(s) 147, 490, 785
Sau3AI GATC 6 cut(s) 16, 83, 208, 277, 387, 853
Sau96I GGNCC 1 cut(s) 710
ScrFI CCNGG 2 cut(s) 24, 1164
SduI GDGCHC 2 cut(s) 351, 1118
SfaNI GCATC 1 cut(s) 336
SinI GGWCC 1 cut(s) 710
SmiMI CAYNNNNRTG 2 cut(s) 585, 1111
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
Sse9I AATT 3 cut(s) 203, 403, 532
SsiI CCGC 3 cut(s) 59, 496, 713
SspI AATATT 2 cut(s) 462, 664
SspMI CTAG 4 cut(s) 51, 381, 764, 1186
StyD4I CCNGG 2 cut(s) 22, 1162
StyI CCWWGG 2 cut(s) 9, 214
TaaI ACNGT 7 cut(s) 308, 314, 449, 576, 640, 865, 1100
TaiI ACGT 1 cut(s) 893
TaqI TCGA 6 cut(s) 113, 276, 285, 474, 687, 828
TasI AATT 3 cut(s) 203, 403, 532
TfiI GAWTC 2 cut(s) 182, 219
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 4 cut(s) 311, 645, 729, 901
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 3 cut(s) 146, 489, 784
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 5 cut(s) 191, 215, 525, 922, 1047
TspRI CASTG 4 cut(s) 311, 645, 729, 901
VpaK11BI GGWCC 1 cut(s) 710
XapI RAATTY 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 516
XmnI GAANNNNTTC 1 cut(s) 672
XspI CTAG 4 cut(s) 51, 381, 764, 1186
Zsp2I ATGCAT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.