AT2G33655

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000186
Physical Location & Seq
Reverse (-)
14242915 .. 14244569
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G33655.1

Sequence Viewer

Length: 453 bp
ATGGAGAAGATGTCCGATCTTCCCCGGGAATTGGTAGAGGAAATACTCTCAAGGGTTCCAGTGAAATCGATGAGAGAAGTCCGAGTGACTTGCAAAACGTGGAACGCTTTATCAAAGCACATTAGTAAAGCAGAAGCTGCAAGGGAAGGAGAGTTTCTTGGGATCGCGAAGAAGAAGTTTTGCCGTAATTCATTCTTGTTGTTTTCTATTCCTTGGCTGCGTGTTCTTATTGTTGTTGATTTCAGTAATGCAATGAAGGATGCTATGAAGGATGCTATGAAGGAGATACGATCGTCTTTTCAGGCTATGAGGTTGATTGTAGCTAATTATGATATTGCGACTCTATCTGCATTTGGAGAAGAGCAGCTTGCAGTTTTATTTCAACCTTTTGAAGGCTATGTGATGGAGATTTGGGTTACGACTAAGATAGAGCCTAGTGCCGTGAGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

150

Amino Acids

17.11

Weight (kDa)

8.56

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 40 9.2e-09 F-box domain
F-box-like PF12937 4 - 39 4.3e-06 F-box-like
FBA_1 PF07734 110 - 149 2.7e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 167
AclWI GGATC 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 31, 392
AgsI TTSAA 2 cut(s) 383, 392
AluBI AGCT 3 cut(s) 137, 323, 367
AluI AGCT 3 cut(s) 137, 323, 367
AlwI GGATC 1 cut(s) 170
AlwNI CAGNNNCTG 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 24
ApeKI GCWGC 3 cut(s) 137, 217, 364
AsuC2I CCSGG 2 cut(s) 25, 26
AvaI CYCGRG 1 cut(s) 24
BaeI ACNNNNGTAYC 2 cut(s) 278, 311
BbvI GCAGC 3 cut(s) 124, 204, 376
BccI CCATC 1 cut(s) 397
BceAI ACGGC 2 cut(s) 168, 425
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BcnI CCSGG 2 cut(s) 25, 26
BfaI CTAG 1 cut(s) 435
BisI GCNGC 3 cut(s) 138, 218, 365
BlsI GCNGC 3 cut(s) 139, 219, 366
Bme1390I CCNGG 2 cut(s) 25, 26
BmeT110I CYCGRG 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 2 cut(s) 25, 26
BmsI GCATC 2 cut(s) 250, 262
BpuEI CTTGAG 1 cut(s) 34
BpuMI CCSGG 2 cut(s) 25, 26
Bsa29I ATCGAT 1 cut(s) 68
BsaJI CCNNGG 3 cut(s) 23, 24, 212
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 392
Bse1I ACTGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 258
BseCI ATCGAT 1 cut(s) 68
BseDI CCNNGG 3 cut(s) 23, 24, 212
BseGI GGATG 2 cut(s) 265, 277
BseLI CCNNNNNNNGG 2 cut(s) 31, 392
BseMI GCAATG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 59
BseXI GCAGC 3 cut(s) 124, 204, 376
Bsh1236I CGCG 1 cut(s) 167
Bsh1285I CGRYCG 1 cut(s) 293
BshVI ATCGAT 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 293
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 31, 392
BsoBI CYCGRG 1 cut(s) 24
Bsp143I GATC 3 cut(s) 16, 162, 290
Bsp68I TCGCGA 1 cut(s) 167
BspDI ATCGAT 1 cut(s) 68
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 1 cut(s) 170
BspQI GCTCTTC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 3 cut(s) 23, 24, 212
BssMI GATC 3 cut(s) 16, 162, 290
BssT1I CCWWGG 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 354
BstAPI GCANNNNNTGC 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 423, 450
BstENI CCTNNNNNAGG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 265, 277
BstFNI CGCG 1 cut(s) 167
BstKTI GATC 3 cut(s) 19, 165, 293
BstMBI GATC 3 cut(s) 16, 162, 290
BstMCI CGRYCG 1 cut(s) 293
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 23, 24
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 3 cut(s) 124, 204, 376
Bsu15I ATCGAT 1 cut(s) 68
BsuTUI ATCGAT 1 cut(s) 68
BtsCI GGATG 2 cut(s) 265, 277
BtsIMutI CAGTG 1 cut(s) 66
BtuMI TCGCGA 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 369
CaiI CAGNNNCTG 1 cut(s) 137
Cfr9I CCCGGG 1 cut(s) 24
ClaI ATCGAT 1 cut(s) 68
CviJI RGCY 7 cut(s) 137, 217, 305, 323, 367, 396, 433
CviKI_1 RGCY 7 cut(s) 137, 217, 305, 323, 367, 396, 433
DdeI CTNAG 2 cut(s) 423, 450
DpnI GATC 3 cut(s) 18, 164, 292
DpnII GATC 3 cut(s) 16, 162, 290
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 24
EcoNI CCTNNNNNAGG 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 212
FaiI YATR 5 cut(s) 266, 278, 308, 330, 399
FalI AAGNNNNNCTT 2 cut(s) 351, 383
Fnu4HI GCNGC 3 cut(s) 138, 218, 365
FokI GGATG 2 cut(s) 272, 284
Fsp4HI GCNGC 3 cut(s) 138, 218, 365
FspBI CTAG 1 cut(s) 435
GluI GCNGC 3 cut(s) 138, 218, 365
HapII CCGG 1 cut(s) 25
HinfI GANTC 1 cut(s) 340
HpaII CCGG 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 16, 83
Hpy188III TCNNGA 1 cut(s) 166
HpyAV CCTTC 5 cut(s) 140, 250, 262, 274, 386
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 5 cut(s) 93, 140, 251, 350, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 423, 450
HpySE526I ACGT 1 cut(s) 98
Kzo9I GATC 3 cut(s) 16, 162, 290
LguI GCTCTTC 1 cut(s) 354
LpnPI CCDG 3 cut(s) 38, 72, 287
Lsp1109I GCAGC 3 cut(s) 124, 204, 376
LweI GCATC 2 cut(s) 250, 262
MaeI CTAG 1 cut(s) 435
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 2 cut(s) 85, 415
MalI GATC 3 cut(s) 18, 164, 292
MboI GATC 3 cut(s) 16, 162, 290
MboII GAAGA 5 cut(s) 11, 19, 181, 184, 371
MluCI AATT 3 cut(s) 29, 187, 325
MlyI GAGTC 1 cut(s) 334
MnlI CCTC 2 cut(s) 31, 303
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 2 cut(s) 25, 26
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 137
NciI CCSGG 2 cut(s) 25, 26
NdeII GATC 3 cut(s) 16, 162, 290
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 85
NruI TCGCGA 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 354
PkrI GCNGC 3 cut(s) 139, 219, 366
Ple19I CGATCG 1 cut(s) 293
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 137
PvuI CGATCG 1 cut(s) 293
RruI TCGCGA 1 cut(s) 167
SapI GCTCTTC 1 cut(s) 354
SatI GCNGC 3 cut(s) 138, 218, 365
Sau3AI GATC 3 cut(s) 16, 162, 290
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 2 cut(s) 25, 26
SetI ASST 6 cut(s) 101, 139, 314, 325, 369, 388
SfaNI GCATC 2 cut(s) 250, 262
SmaI CCCGGG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 3 cut(s) 29, 187, 325
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 2 cut(s) 23, 24
StyI CCWWGG 1 cut(s) 212
TaiI ACGT 1 cut(s) 101
TaqI TCGA 1 cut(s) 68
TasI AATT 3 cut(s) 29, 187, 325
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 3 cut(s) 137, 217, 364
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 4 cut(s) 180, 269, 281, 293
TspMI CCCGGG 1 cut(s) 24
TspRI CASTG 1 cut(s) 66
XagI CCTNNNNNAGG 1 cut(s) 390
XmaI CCCGGG 1 cut(s) 24
XspI CTAG 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.