AT1G25055

UDP-3-O- 3-hydroxymyristoyl N-acetylglucosamine deacetylase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
8806607 .. 8808156
1550 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G25055.1

Sequence Viewer

Length: 1302 bp
ATGAGGAGGAGGAGGTGCGATCTTCAACCGAAGAGAACGAGAATGTGCGATCTTCAACCGAAGAGAACGAGTATGTGCGATCTTCCACCGAAGCTGGTAGGGGAGAAGATCCTCACGAGGATTCCGATAACATCTCTGAGAGCGGTGCGATCCACTTGCAAATTATGGAACGCTTTAACCAAAGATCGGGTTCTGGGTAAAGCAGCGGCGCAGTTTTTGGGGTTTATGACGATGGATTCAAAGGTCTGTTCAGTTAGATTCCATCTCCGTCGCAGCAAGGAGGAAGAAGAAGACACGATGGATCTATCTATAAAGCAGGTAGATTTGCTTAATCAAGTCGAGATATCTAGAGTGTATCACTGCGACGGCTTGTTGTTATGCGTGGCTAAGGACAACTCGAGGGTCGTGGTTTGGAACCCTTATTTGGGGCAAACAAGATGGATCAGACCCAGAACAGAATCCAACATAGGAGACAGCTATGCTCTTGGATACGACATCAACCGTAACCACAAAATCTTGAGGATGGTGCAGACAAGAAACGTTTCCGTTTACAGGTACGAAATCTACGACTTGCGCTCTAATTCATGGAGGGTTCTCGAGGTCACTCCCAACGGGGAAATGGACCCTAATCATCCCCTCTACGGCGTTTCTGTGAAGGGAAATACCTACTTTTTTGCGCATGAGGATAGCAGCAGTGGTGAAATTGATGAAGATGGCGACATAATCGATCTTGAAGATTTCTTACTCTGTTTTGATTTTACAACAGAGACATTTGGTCTGCGTCTGCCTCTTCCGTTTCACTCTACTATCGATGCGACTGTGACCCTCTCTTGTGTTAGAGACCAGCAGCTCGCGGTGCTATATCATAATGAGGGTCTTCACAGTGATGATCGGTTTACCACAGTTGAGTTTTGGGTTACTACTAGTATTGAGCCCAACTCTGTGTCCTGGAGCAAGTTTTTGACAGTGGATATGAGACCATTGGCACTCACTGGTGTTCGGTTTGACAATGATATGGGTGCCACCTTCTTCATTGACGAGGATGAGAAAGTCGCTGTGGTTTTCGATCTAGACGGATACCTAAGCACCGAGAGCGCTCGTTACCACACCGCTTTTATCAGTGGAAAGGATGGATTCTTTAAACCTGTGACTCTAGGAGTAGCTCCCAATGTCGGGGAACCTTGTCCCAGAACCGGGCATATTCCGACTACATATCGTCCCCCGCTTGTCTGCTCGTCTACTTACCTTCCGAGTTTAGTGCAAGTCAACCAACAGCGCAAAAGGAAAGAAAGACATGTTTAG

Protein Analysis

433

Amino Acids

49.64

Weight (kDa)

6.83

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 74 - 422 1.1e-97 F-box associated beta propeller domain
FBA_3 PF08268 98 - 341 7.5e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 678
Acc36I ACCTGC 1 cut(s) 307
AccB1I GGYRCC 1 cut(s) 1019
AccBSI CCGCTC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 1238
AccII CGCG 1 cut(s) 854
AciI CCGC 5 cut(s) 143, 206, 854, 1110, 1223
AclI AACGTT 1 cut(s) 540
AclWI GGATC 4 cut(s) 103, 144, 309, 449
AfaI GTAC 1 cut(s) 557
AfeI AGCGCT 1 cut(s) 1096
AfiI CCNNNNNNNGG 9 cut(s) 186, 424, 425, 552, 641, 1172, 1173, 1193, 1194
AflIII ACRYGT 1 cut(s) 1294
AgsI TTSAA 4 cut(s) 26, 56, 240, 734
AhdI GACNNNNNGTC 1 cut(s) 774
AhlI ACTAGT 1 cut(s) 923
AjnI CCWGG 1 cut(s) 947
AjuI GAANNNNNNNTTGG 2 cut(s) 407, 439
AluBI AGCT 4 cut(s) 94, 477, 850, 1163
AluI AGCT 4 cut(s) 94, 477, 850, 1163
Alw26I GTCTC 4 cut(s) 465, 761, 834, 970
AlwI GGATC 4 cut(s) 103, 144, 309, 449
Ama87I CYCGRG 2 cut(s) 397, 596
Aor51HI AGCGCT 1 cut(s) 1096
ApeKI GCWGC 4 cut(s) 203, 273, 690, 847
Asp700I GAANNNNTTC 1 cut(s) 541
AspLEI GCGC 5 cut(s) 211, 576, 679, 1097, 1278
AspS9I GGNCC 1 cut(s) 622
AsuC2I CCSGG 1 cut(s) 1195
AsuHPI GGTGA 1 cut(s) 710
AvaI CYCGRG 2 cut(s) 397, 596
AvaII GGWCC 1 cut(s) 622
BanI GGYRCC 1 cut(s) 1019
BanII GRGCYC 1 cut(s) 936
BarI GAAGNNNNNNTAC 2 cut(s) 726, 758
BauI CACGAG 1 cut(s) 115
BbsI GAAGAC 2 cut(s) 297, 869
BbvI GCAGC 4 cut(s) 215, 285, 702, 859
BccI CCATC 7 cut(s) 226, 270, 292, 432, 517, 707, 1124
BceAI ACGGC 2 cut(s) 382, 658
BcgI CGANNNNNNTGC 4 cut(s) 138, 172, 1240, 1274
BciT130I CCWGG 1 cut(s) 949
BciVI GTATCC 2 cut(s) 482, 1070
BcnI CCSGG 1 cut(s) 1195
BcoDI GTCTC 4 cut(s) 465, 761, 834, 970
BcuI ACTAGT 1 cut(s) 923
BfaI CTAG 4 cut(s) 348, 924, 1070, 1154
BfoI RGCGCY 1 cut(s) 1098
BfuAI ACCTGC 1 cut(s) 307
BfuI GTATCC 2 cut(s) 482, 1070
BisI GCNGC 5 cut(s) 204, 207, 274, 691, 848
BlsI GCNGC 5 cut(s) 205, 208, 275, 692, 849
Bme1390I CCNGG 2 cut(s) 949, 1195
Bme18I GGWCC 1 cut(s) 622
BmeRI GACNNNNNGTC 1 cut(s) 774
BmeT110I CYCGRG 2 cut(s) 397, 596
BmgT120I GGNCC 1 cut(s) 622
BmiI GGNNCC 4 cut(s) 416, 624, 1021, 1179
BmrFI CCNGG 2 cut(s) 949, 1195
BmsI GCATC 1 cut(s) 802
BpiI GAAGAC 2 cut(s) 297, 869
BplI GAGNNNNNCTC 2 cut(s) 923, 955
BpmI CTGGAG 1 cut(s) 970
Bpu10I CCTNAGC 2 cut(s) 387, 1082
BpuEI CTTGAG 1 cut(s) 538
BpuMI CCSGG 1 cut(s) 1195
Bsa29I ATCGAT 2 cut(s) 726, 810
BsaI GGTCTC 2 cut(s) 834, 970
Bsc4I CCNNNNNNNGG 9 cut(s) 186, 424, 425, 552, 641, 1172, 1173, 1193, 1194
Bse1I ACTGG 1 cut(s) 997
BseBI CCWGG 1 cut(s) 949
BseCI ATCGAT 2 cut(s) 726, 810
BseGI GGATG 4 cut(s) 528, 631, 1048, 1135
BseLI CCNNNNNNNGG 9 cut(s) 186, 424, 425, 552, 641, 1172, 1173, 1193, 1194
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 997
BseRI GAGGAG 3 cut(s) 19, 22, 25
BseXI GCAGC 4 cut(s) 215, 285, 702, 859
BsgI GTGCAG 1 cut(s) 548
Bsh1236I CGCG 1 cut(s) 854
BshNI GGYRCC 1 cut(s) 1019
BshVI ATCGAT 2 cut(s) 726, 810
BsiHKCI CYCGRG 2 cut(s) 397, 596
BsiSI CCGG 1 cut(s) 1194
BslFI GGGAC 2 cut(s) 1170, 1203
BslI CCNNNNNNNGG 9 cut(s) 186, 424, 425, 552, 641, 1172, 1173, 1193, 1194
BsmAI GTCTC 4 cut(s) 465, 761, 834, 970
BsmFI GGGAC 2 cut(s) 1170, 1203
Bso31I GGTCTC 2 cut(s) 834, 970
BsoBI CYCGRG 2 cut(s) 397, 596
Bsp1286I GDGCHC 1 cut(s) 936
BspACI CCGC 5 cut(s) 143, 206, 854, 1110, 1223
BspCNI CTCAG 1 cut(s) 129
BspDI ATCGAT 2 cut(s) 726, 810
BspFNI CGCG 1 cut(s) 854
BspLI GGNNCC 4 cut(s) 416, 624, 1021, 1179
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 4 cut(s) 103, 144, 309, 449
BspT107I GGYRCC 1 cut(s) 1019
BspTNI GGTCTC 2 cut(s) 834, 970
BsrBI CCGCTC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 997
BssSI CACGAG 1 cut(s) 115
Bst2BI CACGAG 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 949
Bst4CI ACNGT 5 cut(s) 503, 820, 884, 904, 967
Bst6I CTCTTC 3 cut(s) 26, 56, 795
BstC8I GCNNGC 1 cut(s) 852
BstDEI CTNAG 3 cut(s) 137, 387, 1082
BstF5I GGATG 4 cut(s) 528, 631, 1048, 1135
BstFNI CGCG 1 cut(s) 854
BstH2I RGCGCY 1 cut(s) 1098
BstHHI GCGC 5 cut(s) 211, 576, 679, 1097, 1278
BstMAI GTCTC 4 cut(s) 465, 761, 834, 970
BstMWI GCNNNNNNNGC 2 cut(s) 856, 1092
BstNI CCWGG 1 cut(s) 949
BstNSI RCATGY 1 cut(s) 1298
BstSCI CCNGG 2 cut(s) 947, 1193
BstUI CGCG 1 cut(s) 854
BstV1I GCAGC 4 cut(s) 215, 285, 702, 859
BstV2I GAAGAC 2 cut(s) 297, 869
BstX2I RGATCY 2 cut(s) 108, 301
BstYI RGATCY 2 cut(s) 108, 301
Bsu15I ATCGAT 2 cut(s) 726, 810
BsuI GTATCC 2 cut(s) 482, 1070
BsuTUI ATCGAT 2 cut(s) 726, 810
BtsCI GGATG 4 cut(s) 528, 631, 1048, 1135
BtsI GCAGTG 2 cut(s) 358, 700
BtsIMutI CAGTG 6 cut(s) 358, 700, 889, 972, 990, 1126
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 852
CfoI GCGC 5 cut(s) 211, 576, 679, 1097, 1278
Cfr13I GGNCC 1 cut(s) 622
ClaI ATCGAT 2 cut(s) 726, 810
CseI GACGC 1 cut(s) 770
Csp6I GTAC 1 cut(s) 556
CviAII CATG 3 cut(s) 585, 680, 1295
CviJI RGCY 7 cut(s) 94, 369, 386, 477, 850, 934, 1163
CviKI_1 RGCY 7 cut(s) 94, 369, 386, 477, 850, 934, 1163
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 3 cut(s) 137, 387, 1082
DraI TTTAAA 1 cut(s) 1141
DriI GACNNNNNGTC 1 cut(s) 774
Eam1104I CTCTTC 3 cut(s) 26, 56, 795
Eam1105I GACNNNNNGTC 1 cut(s) 774
EarI CTCTTC 3 cut(s) 26, 56, 795
Eco24I GRGCYC 1 cut(s) 936
Eco31I GGTCTC 2 cut(s) 834, 970
Eco32I GATATC 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 622
Eco47III AGCGCT 1 cut(s) 1096
Eco88I CYCGRG 2 cut(s) 397, 596
EcoRII CCWGG 1 cut(s) 947
EcoRV GATATC 1 cut(s) 345
EcoT38I GRGCYC 1 cut(s) 936
FaeI CATG 3 cut(s) 588, 683, 1298
FaqI GGGAC 2 cut(s) 1170, 1203
FatI CATG 3 cut(s) 584, 679, 1294
FauI CCCGC 1 cut(s) 1230
FblI GTMKAC 1 cut(s) 1238
Fnu4HI GCNGC 5 cut(s) 204, 207, 274, 691, 848
FokI GGATG 4 cut(s) 535, 618, 1055, 1142
FriOI GRGCYC 1 cut(s) 936
Fsp4HI GCNGC 5 cut(s) 204, 207, 274, 691, 848
FspBI CTAG 4 cut(s) 348, 924, 1070, 1154
FspI TGCGCA 1 cut(s) 678
GlaI GCGC 5 cut(s) 210, 575, 678, 1096, 1277
GluI GCNGC 5 cut(s) 204, 207, 274, 691, 848
GsuI CTGGAG 1 cut(s) 970
HaeII RGCGCY 1 cut(s) 1098
HapII CCGG 1 cut(s) 1194
HgaI GACGC 1 cut(s) 770
HhaI GCGC 5 cut(s) 211, 576, 679, 1097, 1278
Hin1II CATG 3 cut(s) 588, 683, 1298
Hin6I GCGC 5 cut(s) 209, 574, 677, 1095, 1276
HinP1I GCGC 5 cut(s) 209, 574, 677, 1095, 1276
HincII GTYRAC 1 cut(s) 1267
HindII GTYRAC 1 cut(s) 1267
HinfI GANTC 6 cut(s) 121, 236, 258, 458, 1134, 1150
HpaII CCGG 1 cut(s) 1194
HphI GGTGA 1 cut(s) 710
Hpy166II GTNNAC 4 cut(s) 550, 897, 1239, 1267
Hpy188I TCNGA 5 cut(s) 126, 138, 446, 1206, 1251
Hpy188III TCNNGA 7 cut(s) 115, 340, 348, 517, 596, 731, 1070
Hpy8I GTNNAC 4 cut(s) 550, 897, 1239, 1267
Hpy99I CGWCG 2 cut(s) 273, 368
HpyAV CCTTC 3 cut(s) 649, 1036, 1256
HpyCH4III ACNGT 5 cut(s) 503, 820, 884, 904, 967
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 3 cut(s) 159, 529, 1261
HpyF10VI GCNNNNNNNGC 2 cut(s) 856, 1092
HpyF3I CTNAG 3 cut(s) 137, 387, 1082
HpySE526I ACGT 1 cut(s) 540
Hsp92II CATG 3 cut(s) 588, 683, 1298
HspAI GCGC 5 cut(s) 209, 574, 677, 1095, 1276
LmnI GCTCC 2 cut(s) 951, 1168
Lsp1109I GCAGC 4 cut(s) 215, 285, 702, 859
LweI GCATC 1 cut(s) 802
MaeI CTAG 4 cut(s) 348, 924, 1070, 1154
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 6 cut(s) 503, 601, 820, 916, 1100, 1147
MbiI CCGCTC 1 cut(s) 143
MflI RGATCY 2 cut(s) 108, 301
MhlI GDGCHC 1 cut(s) 936
MluCI AATT 3 cut(s) 161, 580, 702
MlyI GAGTC 1 cut(s) 1144
MmeI TCCRAC 2 cut(s) 486, 1229
MroXI GAANNNNTTC 1 cut(s) 541
MseI TTAA 3 cut(s) 176, 330, 1140
MslI CAYNNNNRTG 1 cut(s) 885
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 1194
MspR9I CCNGG 2 cut(s) 949, 1195
MvaI CCWGG 1 cut(s) 949
MvnI CGCG 1 cut(s) 854
MwoI GCNNNNNNNGC 2 cut(s) 856, 1092
NciI CCSGG 1 cut(s) 1195
NlaIII CATG 3 cut(s) 588, 683, 1298
NlaIV GGNNCC 4 cut(s) 416, 624, 1021, 1179
NmuCI GTSAC 3 cut(s) 601, 820, 1147
NsbI TGCGCA 1 cut(s) 678
NspI RCATGY 1 cut(s) 1298
PaeR7I CTCGAG 2 cut(s) 397, 596
PciI ACATGT 1 cut(s) 1294
PcsI WCGNNNNNNNCGW 2 cut(s) 122, 564
PdmI GAANNNNTTC 1 cut(s) 541
PfeI GAWTC 5 cut(s) 121, 236, 258, 458, 1134
PfoI TCCNGGA 1 cut(s) 947
PkrI GCNGC 5 cut(s) 205, 208, 275, 692, 849
PleI GAGTC 1 cut(s) 1144
PpsI GAGTC 1 cut(s) 1144
PscI ACATGT 1 cut(s) 1294
Psp1406I AACGTT 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 947
PspGI CCWGG 1 cut(s) 947
PspN4I GGNNCC 4 cut(s) 416, 624, 1021, 1179
PspPI GGNCC 1 cut(s) 622
PspXI VCTCGAGB 1 cut(s) 397
PsuI RGATCY 2 cut(s) 108, 301
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
RseI CAYNNNNRTG 1 cut(s) 885
SaqAI TTAA 3 cut(s) 176, 330, 1140
SatI GCNGC 5 cut(s) 204, 207, 274, 691, 848
Sau96I GGNCC 1 cut(s) 622
SchI GAGTC 1 cut(s) 1144
ScrFI CCNGG 2 cut(s) 949, 1195
SduI GDGCHC 1 cut(s) 936
SfaNI GCATC 1 cut(s) 802
Sfr274I CTCGAG 2 cut(s) 397, 596
SinI GGWCC 1 cut(s) 622
SlaI CTCGAG 2 cut(s) 397, 596
SmiMI CAYNNNNRTG 1 cut(s) 885
SmlI CTYRAG 3 cut(s) 397, 517, 596
SmoI CTYRAG 3 cut(s) 397, 517, 596
SpeI ACTAGT 1 cut(s) 923
Sse9I AATT 3 cut(s) 161, 580, 702
SsiI CCGC 5 cut(s) 143, 206, 854, 1110, 1223
SspMI CTAG 4 cut(s) 348, 924, 1070, 1154
StyD4I CCNGG 2 cut(s) 947, 1193
TaaI ACNGT 5 cut(s) 503, 820, 884, 904, 967
TaiI ACGT 1 cut(s) 543
TaqI TCGA 6 cut(s) 339, 398, 597, 726, 810, 1065
TasI AATT 3 cut(s) 161, 580, 702
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 5 cut(s) 121, 236, 258, 458, 1134
Tru1I TTAA 3 cut(s) 176, 330, 1140
Tru9I TTAA 3 cut(s) 176, 330, 1140
TscAI CASTG 6 cut(s) 365, 700, 889, 972, 997, 1126
TseFI GTSAC 3 cut(s) 601, 820, 1147
TseI GCWGC 4 cut(s) 203, 273, 690, 847
Tsp45I GTSAC 3 cut(s) 601, 820, 1147
TspDTI ATGAA 3 cut(s) 573, 723, 1021
TspGWI ACGGA 4 cut(s) 257, 535, 783, 1089
TspRI CASTG 6 cut(s) 365, 700, 889, 972, 997, 1126
VpaK11BI GGWCC 1 cut(s) 622
XbaI TCTAGA 2 cut(s) 347, 1069
XceI RCATGY 1 cut(s) 1298
XcmI CCANNNNNNNNNTGG 1 cut(s) 616
XhoI CTCGAG 2 cut(s) 397, 596
XmiI GTMKAC 1 cut(s) 1238
XmnI GAANNNNTTC 1 cut(s) 541
XspI CTAG 4 cut(s) 348, 924, 1070, 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.