AT4G09870
ERF Family

termination of mitochondrial transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000186
Physical Location & Seq
Forward (+)
6200089 .. 6201215
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09870.1

Sequence Viewer

Length: 1014 bp
ATGTCGATATCGGAGCTTTCACAAGACTTGTTAGAGGAGATACTCTGTCGCGTTCCTGCCATATCCCTAAAAAAGTTACGATCTACTTGCAAGCTATGGAACAGTTTATTCATCGACAAGAGGGTTAGGAATGAACTTAGGCGAGTCACTGTATCTCAAGTCTTTCACTGTGATGGCTTATTGTTATACATCAACGGAGTAGACACTATAATGGTTGTTTGGAACCCATTTATGGGACAAACGAGGTGGGTCCAACCCATAGCTCGTGACCAGACCCATAAATATGTTCTTGGATCCTACCAAGACATAAAATCCCGCATAACTAGCTATAAAATACTGAGATACAGATACACGTTATGTGGCAGCAAACTAGCATTCGAAATTTGTGAGCTTTACTCTAGTTCTTGGAGGGTTCTTGATATCACTATGGACTTCGATCTTTATCATAATTCCTGCGTGTCTTTGAAGGGTAAGACTTACTGGCTCACTTTCGATAAAAAAGACCGGGAGCTCGATATGTTTAGTTTTGATTATGCAACAGAGAGTTTTGGAAATCGTATGCCTCTTCCCTATCAGTTTCCTAGATGTAGTTATGAAACTGTGGCTCTATCCGTTGTTCGAGAAGAGAAACTATCCGTATTATTACAGCTCAGAGGTACATCAAGGAAAGAAATATGGGTAACAAATAAGATTAATGAGACCACTCAAGTCTTGTCGTGGAGCAAGGTGTTAACGCTGGATAATTCTGATTTTGGTTATTGCCCTGGACTAAGTTTTTTTGTCGACGAGGAGAAGAAACAAGTCTTGTGTTTTGAGAAATGTCGTGTGTTCCACATCCACACCAATGATGAGGTCTTCGAAAACAAAGTATATACTGTTGGGGAGGATAATAAAGTCACACAACTGCGTTTTGAACAATCTTTCTGTCCTAAAATGGATCCATATGTGTTTGGTTATGTTCCAAGTTTGGTTCAAATCGAACAACCTCGACGCAAACGTAAAAGAGGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006355 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006914 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016236 GO:0019219 GO:0019222 GO:0019538 GO:0019843 GO:0019867 GO:0022607 GO:0022613 GO:0022618 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031966 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032270 GO:0032502 GO:0032543 GO:0034248 GO:0034250 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045892 GO:0045934 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0060255 GO:0061668 GO:0061919 GO:0065003 GO:0065007 GO:0070013 GO:0070129 GO:0070131 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903108 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04130 ko04310 map04130 map04310
Pfam Domains
Protein Families
mTERF

Protein Analysis

337

Amino Acids

39.74

Weight (kDa)

8.74

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 41 1.4e-07 F-box domain
FBA_1 PF07734 28 - 326 1.3e-77 F-box associated beta propeller domain
FBA_3 PF08268 54 - 229 2e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 201, 783
AccII CGCG 1 cut(s) 51
AciI CCGC 1 cut(s) 316
AclWI GGATC 4 cut(s) 288, 301, 932, 945
AcsI RAATTY 1 cut(s) 381
AfaI GTAC 1 cut(s) 658
AfiI CCNNNNNNNGG 2 cut(s) 232, 233
AflIII ACRYGT 1 cut(s) 351
AgsI TTSAA 3 cut(s) 466, 914, 974
AjnI CCWGG 1 cut(s) 763
AluBI AGCT 7 cut(s) 16, 94, 263, 327, 391, 511, 649
AluI AGCT 7 cut(s) 16, 94, 263, 327, 391, 511, 649
Alw21I GWGCWC 1 cut(s) 513
Alw26I GTCTC 1 cut(s) 692
AlwI GGATC 4 cut(s) 288, 301, 932, 945
ApeKI GCWGC 1 cut(s) 363
ApoI RAATTY 1 cut(s) 381
AseI ATTAAT 1 cut(s) 693
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 506
AsuII TTCGAA 2 cut(s) 378, 858
AvaII GGWCC 1 cut(s) 250
BamHI GGATCC 2 cut(s) 293, 937
BanII GRGCYC 1 cut(s) 513
BauI CACGAG 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 847
Bbv12I GWGCWC 1 cut(s) 513
BbvI GCAGC 1 cut(s) 375
BccI CCATC 1 cut(s) 167
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BciT130I CCWGG 1 cut(s) 765
BcnI CCSGG 1 cut(s) 506
BcoDI GTCTC 1 cut(s) 692
BfaI CTAG 4 cut(s) 324, 371, 399, 582
BisI GCNGC 1 cut(s) 364
BlsI GCNGC 1 cut(s) 365
Bme1390I CCNGG 2 cut(s) 506, 765
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 4 cut(s) 224, 251, 295, 939
BmrFI CCNGG 2 cut(s) 506, 765
BpiI GAAGAC 1 cut(s) 847
BplI GAGNNNNNCTC 2 cut(s) 380, 412
Bpu14I TTCGAA 2 cut(s) 378, 858
BpuEI CTTGAG 2 cut(s) 141, 690
BpuMI CCSGG 1 cut(s) 506
BsaBI GATNNNNATC 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 692
BsaJI CCNNGG 1 cut(s) 763
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 233
Bse1I ACTGG 1 cut(s) 485
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 1 cut(s) 765
BseDI CCNNGG 1 cut(s) 763
BseGI GGATG 1 cut(s) 834
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 2 cut(s) 232, 233
BseMII CTCAG 2 cut(s) 329, 664
BseNI ACTGG 1 cut(s) 485
BseRI GAGGAG 2 cut(s) 50, 803
BseXI GCAGC 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 513
BsiSI CCGG 1 cut(s) 505
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 2 cut(s) 232, 233
BsmAI GTCTC 1 cut(s) 692
BsmFI GGGAC 1 cut(s) 249
BsmI GAATGC 1 cut(s) 374
Bso31I GGTCTC 1 cut(s) 692
Bsp119I TTCGAA 2 cut(s) 378, 858
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 4 cut(s) 80, 293, 436, 937
BspACI CCGC 1 cut(s) 316
BspCNI CTCAG 2 cut(s) 330, 663
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 4 cut(s) 224, 251, 295, 939
BspPI GGATC 4 cut(s) 288, 301, 932, 945
BspT104I TTCGAA 2 cut(s) 378, 858
BspTNI GGTCTC 1 cut(s) 692
BsrI ACTGG 1 cut(s) 485
BssECI CCNNGG 1 cut(s) 763
BssMI GATC 4 cut(s) 80, 293, 436, 937
BssSI CACGAG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 765
Bst4CI ACNGT 5 cut(s) 104, 151, 170, 601, 877
Bst6I CTCTTC 2 cut(s) 570, 618
BstBI TTCGAA 2 cut(s) 378, 858
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 4 cut(s) 137, 338, 650, 770
BstF5I GGATG 1 cut(s) 834
BstFNI CGCG 1 cut(s) 51
BstKTI GATC 4 cut(s) 83, 296, 439, 940
BstMAI GTCTC 1 cut(s) 692
BstMBI GATC 4 cut(s) 80, 293, 436, 937
BstMWI GCNNNNNNNGC 1 cut(s) 324
BstNI CCWGG 1 cut(s) 765
BstSCI CCNGG 2 cut(s) 504, 763
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 375
BstV2I GAAGAC 1 cut(s) 847
BstX2I RGATCY 2 cut(s) 293, 937
BstYI RGATCY 2 cut(s) 293, 937
BtsCI GGATG 1 cut(s) 834
BtsIMutI CAGTG 2 cut(s) 147, 166
Cac8I GCNNGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 250
CseI GACGC 1 cut(s) 999
Csp6I GTAC 1 cut(s) 657
CspCI CAANNNNNGTGG 2 cut(s) 227, 262
CviQI GTAC 1 cut(s) 657
DdeI CTNAG 4 cut(s) 137, 338, 650, 770
DpnI GATC 4 cut(s) 82, 295, 438, 939
DpnII GATC 4 cut(s) 80, 293, 436, 937
Eam1104I CTCTTC 2 cut(s) 570, 618
EarI CTCTTC 2 cut(s) 570, 618
Ecl136II GAGCTC 1 cut(s) 511
Eco24I GRGCYC 1 cut(s) 513
Eco31I GGTCTC 1 cut(s) 692
Eco32I GATATC 2 cut(s) 9, 421
Eco47I GGWCC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 511
EcoICRI GAGCTC 1 cut(s) 511
EcoRII CCWGG 1 cut(s) 763
EcoRV GATATC 2 cut(s) 9, 421
EcoT38I GRGCYC 1 cut(s) 513
FaqI GGGAC 1 cut(s) 249
FauI CCCGC 1 cut(s) 323
FauNDI CATATG 1 cut(s) 943
FblI GTMKAC 2 cut(s) 201, 783
Fnu4HI GCNGC 1 cut(s) 364
FokI GGATG 1 cut(s) 821
FriOI GRGCYC 1 cut(s) 513
Fsp4HI GCNGC 1 cut(s) 364
FspBI CTAG 4 cut(s) 324, 371, 399, 582
GluI GCNGC 1 cut(s) 364
HapII CCGG 1 cut(s) 505
HgaI GACGC 1 cut(s) 999
HincII GTYRAC 2 cut(s) 732, 784
HindII GTYRAC 2 cut(s) 732, 784
HinfI GANTC 1 cut(s) 144
HpaI GTTAAC 1 cut(s) 732
HpaII CCGG 1 cut(s) 505
Hpy166II GTNNAC 3 cut(s) 202, 732, 784
Hpy188I TCNGA 3 cut(s) 13, 653, 748
Hpy188III TCNNGA 3 cut(s) 266, 416, 620
Hpy8I GTNNAC 3 cut(s) 202, 732, 784
Hpy99I CGWCG 2 cut(s) 788, 993
HpyAV CCTTC 1 cut(s) 460
HpyCH4III ACNGT 5 cut(s) 104, 151, 170, 601, 877
HpyCH4IV ACGT 2 cut(s) 353, 997
HpyCH4V TGCA 2 cut(s) 90, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 324
HpyF3I CTNAG 4 cut(s) 137, 338, 650, 770
HpySE526I ACGT 2 cut(s) 353, 997
KspAI GTTAAC 1 cut(s) 732
Kzo9I GATC 4 cut(s) 80, 293, 436, 937
LmnI GCTCC 3 cut(s) 13, 508, 720
LpnPI CCDG 8 cut(s) 69, 284, 466, 466, 518, 722, 750, 777
Lsp1109I GCAGC 1 cut(s) 375
MaeI CTAG 4 cut(s) 324, 371, 399, 582
MaeII ACGT 2 cut(s) 353, 997
MaeIII GTNAC 6 cut(s) 75, 145, 266, 679, 895, 1007
MalI GATC 4 cut(s) 82, 295, 438, 939
MboI GATC 4 cut(s) 80, 293, 436, 937
MboII GAAGA 4 cut(s) 557, 635, 805, 847
MflI RGATCY 2 cut(s) 293, 937
MhlI GDGCHC 1 cut(s) 513
MluCI AATT 3 cut(s) 381, 448, 742
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 277
MseI TTAA 2 cut(s) 693, 731
MslI CAYNNNNRTG 4 cut(s) 171, 209, 282, 843
MspI CCGG 1 cut(s) 505
MspR9I CCNGG 2 cut(s) 506, 765
Mva1269I GAATGC 1 cut(s) 374
MvaI CCWGG 1 cut(s) 765
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 324
NciI CCSGG 1 cut(s) 506
NdeI CATATG 1 cut(s) 943
NdeII GATC 4 cut(s) 80, 293, 436, 937
NlaIV GGNNCC 4 cut(s) 224, 251, 295, 939
NmuCI GTSAC 4 cut(s) 145, 266, 895, 1007
NspV TTCGAA 2 cut(s) 378, 858
PcsI WCGNNNNNNNCGW 1 cut(s) 994
PctI GAATGC 1 cut(s) 374
PkrI GCNGC 1 cut(s) 365
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PshBI ATTAAT 1 cut(s) 693
Psp124BI GAGCTC 1 cut(s) 513
Psp6I CCWGG 1 cut(s) 763
PspGI CCWGG 1 cut(s) 763
PspN4I GGNNCC 4 cut(s) 224, 251, 295, 939
PspPI GGNCC 1 cut(s) 250
PsuI RGATCY 2 cut(s) 293, 937
RsaI GTAC 1 cut(s) 658
RsaNI GTAC 1 cut(s) 657
RseI CAYNNNNRTG 4 cut(s) 171, 209, 282, 843
SacI GAGCTC 1 cut(s) 513
SalI GTCGAC 1 cut(s) 782
SaqAI TTAA 2 cut(s) 693, 731
SatI GCNGC 1 cut(s) 364
Sau3AI GATC 4 cut(s) 80, 293, 436, 937
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 2 cut(s) 506, 765
SduI GDGCHC 1 cut(s) 513
SfuI TTCGAA 2 cut(s) 378, 858
SinI GGWCC 1 cut(s) 250
SmiMI CAYNNNNRTG 4 cut(s) 171, 209, 282, 843
SmlI CTYRAG 2 cut(s) 156, 705
SmoI CTYRAG 2 cut(s) 156, 705
Sse9I AATT 3 cut(s) 381, 448, 742
SsiI CCGC 1 cut(s) 316
SspMI CTAG 4 cut(s) 324, 371, 399, 582
SstI GAGCTC 1 cut(s) 513
StyD4I CCNGG 2 cut(s) 504, 763
TaaI ACNGT 5 cut(s) 104, 151, 170, 601, 877
TaiI ACGT 2 cut(s) 356, 1000
TasI AATT 3 cut(s) 381, 448, 742
Tru1I TTAA 2 cut(s) 693, 731
Tru9I TTAA 2 cut(s) 693, 731
TscAI CASTG 2 cut(s) 154, 173
TseFI GTSAC 4 cut(s) 145, 266, 895, 1007
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 4 cut(s) 145, 266, 895, 1007
TspDTI ATGAA 3 cut(s) 100, 147, 609
TspGWI ACGGA 3 cut(s) 210, 601, 625
TspRI CASTG 2 cut(s) 154, 173
VpaK11BI GGWCC 1 cut(s) 250
VspI ATTAAT 1 cut(s) 693
XapI RAATTY 1 cut(s) 381
XmiI GTMKAC 2 cut(s) 201, 783
XspI CTAG 4 cut(s) 324, 371, 399, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.