AT3G14030

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
4646272 .. 4647124
853 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G14030.1

Sequence Viewer

Length: 603 bp
ATGATTACCTCACTTTCGAAACAAAGTTTTTGGGGAAATACTTACTTTTACGCTCAAGAAAAAGCAACGGTGGAAGGAGAAGGAATGGAAGAGGTCGACGTAGATACAACGTATCTTCCAGTTTTTCTACTCTGTTTTGATTTTACAGCAGAGAGATTTGGACCGCGTCTTCCTCTTCCGTTTCACTCTCATGATAACTCTCATGATGAAGAGATTGTGTCTCTATTCTGTGTCAAAGAGGAGCAGCTCGCTGTGTTACATCAAAACTTTGCTAGATGCTTGGAGATTTGGATTACCACCAAGATCGAGCCTAGTGCGGTGTCTTGGAGCATGTTTTTGAAAGTGGATATGAGACCACTCACTGGCTTTAAGTGTCATGTTGAAGCTGGGAGTTTCTTTGTTGACGAGGAGAAGAAAGTCGCCATGGTTTTCGATCTAGACGGACGTAAAAAGACCGAGACTTGCCGCTACCAGACAGCTCACATCATTGGACAAGATGGATACTTCAAATCTGTGAATATCCGAGAAGCACAGAATCTCGGGAAACCTGACATATTTGGATACACTCCTTCCATTTATTGTGTCCCACTTGGATATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

200

Amino Acids

22.94

Weight (kDa)

5.14

Isoelectric Point (pI)

32.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 9 - 192 4.3e-48 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 362
AccI GTMKAC 1 cut(s) 96
AccII CGCG 1 cut(s) 166
AciI CCGC 3 cut(s) 164, 317, 466
AfiI CCNNNNNNNGG 1 cut(s) 362
AgsI TTSAA 3 cut(s) 340, 383, 508
AluBI AGCT 3 cut(s) 247, 386, 479
AluI AGCT 3 cut(s) 247, 386, 479
Alw26I GTCTC 3 cut(s) 225, 346, 452
Ama87I CYCGRG 1 cut(s) 539
ApeKI GCWGC 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 161
AsuII TTCGAA 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 539
AvaII GGWCC 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 491
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciVI GTATCC 2 cut(s) 494, 554
BcoDI GTCTC 3 cut(s) 225, 346, 452
BfaI CTAG 3 cut(s) 273, 312, 437
BfuI GTATCC 2 cut(s) 494, 554
BisI GCNGC 2 cut(s) 245, 466
BlsI GCNGC 2 cut(s) 246, 467
Bme18I GGWCC 1 cut(s) 161
BmeT110I CYCGRG 1 cut(s) 539
BmgT120I GGNCC 1 cut(s) 161
BmsI GCATC 1 cut(s) 266
BpiI GAAGAC 1 cut(s) 161
Bpu14I TTCGAA 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 346
BsaJI CCNNGG 1 cut(s) 423
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse1I ACTGG 2 cut(s) 119, 367
BseDI CCNNGG 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 362
BseNI ACTGG 2 cut(s) 119, 367
BseRI GAGGAG 2 cut(s) 254, 422
BseXI GCAGC 1 cut(s) 256
BseYI CCCAGC 1 cut(s) 386
Bsh1236I CGCG 1 cut(s) 166
BsiHKCI CYCGRG 1 cut(s) 539
BslFI GGGAC 1 cut(s) 569
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 3 cut(s) 225, 346, 452
BsmFI GGGAC 1 cut(s) 569
Bso31I GGTCTC 1 cut(s) 346
BsoBI CYCGRG 1 cut(s) 539
Bsp119I TTCGAA 1 cut(s) 17
Bsp143I GATC 2 cut(s) 303, 433
Bsp19I CCATGG 1 cut(s) 423
BspACI CCGC 3 cut(s) 164, 317, 466
BspFNI CGCG 1 cut(s) 166
BspHI TCATGA 2 cut(s) 190, 202
BspT104I TTCGAA 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 346
BsrI ACTGG 2 cut(s) 119, 367
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 2 cut(s) 303, 433
BssT1I CCWWGG 1 cut(s) 423
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 3 cut(s) 84, 180, 204
BstBI TTCGAA 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 249
BstDSI CCRYGG 1 cut(s) 423
BstFNI CGCG 1 cut(s) 166
BstKTI GATC 2 cut(s) 306, 436
BstMAI GTCTC 3 cut(s) 225, 346, 452
BstMBI GATC 2 cut(s) 303, 433
BstNSI RCATGY 1 cut(s) 334
BstUI CGCG 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 1 cut(s) 161
BsuI GTATCC 2 cut(s) 494, 554
BtgI CCRYGG 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 249
CciI TCATGA 2 cut(s) 190, 202
Cfr13I GGNCC 1 cut(s) 161
CseI GACGC 1 cut(s) 155
CviAII CATG 5 cut(s) 191, 203, 331, 377, 424
CviJI RGCY 5 cut(s) 247, 310, 366, 386, 479
CviKI_1 RGCY 5 cut(s) 247, 310, 366, 386, 479
DpnI GATC 2 cut(s) 305, 435
DpnII GATC 2 cut(s) 303, 433
Eam1104I CTCTTC 3 cut(s) 84, 180, 204
EarI CTCTTC 3 cut(s) 84, 180, 204
Eco130I CCWWGG 1 cut(s) 423
Eco31I GGTCTC 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 539
EcoT14I CCWWGG 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 5 cut(s) 194, 206, 334, 380, 427
FaiI YATR 9 cut(s) 192, 204, 332, 350, 378, 425, 554, 597, 601
FaqI GGGAC 1 cut(s) 569
FatI CATG 5 cut(s) 190, 202, 330, 376, 423
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 2 cut(s) 245, 466
Fsp4HI GCNGC 2 cut(s) 245, 466
FspBI CTAG 3 cut(s) 273, 312, 437
GluI GCNGC 2 cut(s) 245, 466
GsaI CCCAGC 1 cut(s) 390
HgaI GACGC 1 cut(s) 155
Hin1II CATG 5 cut(s) 194, 206, 334, 380, 427
HincII GTYRAC 2 cut(s) 97, 403
HindII GTYRAC 2 cut(s) 97, 403
HinfI GANTC 1 cut(s) 535
Hpy166II GTNNAC 2 cut(s) 97, 403
Hpy188I TCNGA 1 cut(s) 524
Hpy188III TCNNGA 5 cut(s) 56, 191, 203, 437, 541
Hpy8I GTNNAC 2 cut(s) 97, 403
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 3 cut(s) 68, 74, 579
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 3 cut(s) 99, 110, 445
HpySE526I ACGT 3 cut(s) 99, 110, 445
Hsp92II CATG 5 cut(s) 194, 206, 334, 380, 427
Kzo9I GATC 2 cut(s) 303, 433
LmnI GCTCC 2 cut(s) 241, 327
LpnPI CCDG 5 cut(s) 132, 348, 372, 485, 561
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 1 cut(s) 266
MaeI CTAG 3 cut(s) 273, 312, 437
MaeII ACGT 3 cut(s) 99, 110, 445
MaeIII GTNAC 1 cut(s) 255
MalI GATC 2 cut(s) 305, 435
MboI GATC 2 cut(s) 303, 433
MboII GAAGA 6 cut(s) 101, 107, 161, 167, 221, 424
MnlI CCTC 5 cut(s) 19, 85, 183, 232, 400
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 189
MvnI CGCG 1 cut(s) 166
NcoI CCATGG 1 cut(s) 423
NdeII GATC 2 cut(s) 303, 433
NlaIII CATG 5 cut(s) 194, 206, 334, 380, 427
NspI RCATGY 1 cut(s) 334
NspV TTCGAA 1 cut(s) 17
PagI TCATGA 2 cut(s) 190, 202
PfeI GAWTC 1 cut(s) 535
PflFI GACNNNGTC 1 cut(s) 165
PflMI CCANNNNNTGG 1 cut(s) 362
PkrI GCNGC 2 cut(s) 246, 467
PspFI CCCAGC 1 cut(s) 386
PspPI GGNCC 1 cut(s) 161
PsyI GACNNNGTC 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 189
SalI GTCGAC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 2 cut(s) 245, 466
Sau3AI GATC 2 cut(s) 303, 433
Sau96I GGNCC 1 cut(s) 161
SetI ASST 9 cut(s) 11, 96, 102, 113, 249, 388, 448, 481, 550
SfaNI GCATC 1 cut(s) 266
SfuI TTCGAA 1 cut(s) 17
SinI GGWCC 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
SsiI CCGC 3 cut(s) 164, 317, 466
SspMI CTAG 3 cut(s) 273, 312, 437
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 3 cut(s) 102, 113, 448
TaqI TCGA 4 cut(s) 17, 96, 306, 432
TaqII GACCGA 1 cut(s) 470
TauI GCSGC 1 cut(s) 468
TfiI GAWTC 1 cut(s) 535
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 1 cut(s) 367
TseI GCWGC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 222
TspGWI ACGGA 2 cut(s) 168, 456
TspRI CASTG 1 cut(s) 367
Tth111I GACNNNGTC 1 cut(s) 165
Van91I CCANNNNNTGG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 161
XbaI TCTAGA 1 cut(s) 436
XceI RCATGY 1 cut(s) 334
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 3 cut(s) 273, 312, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.