AT4G33290

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000186
Physical Location & Seq
Forward (+)
16049573 .. 16050865
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33290.1

Sequence Viewer

Length: 1293 bp
ATGATCACCGATCTTCCAAAGGATTTGATAGAAGAAATCCTTTCAAGGGTTTCCATGACATCTATGAGAGTTGTGCGATTAACTTGCAAAAGTTGGAATACTTTATCCAATAGTGAGAGCTTTAAGAAGATGCACATTGGTAAAGTTACATCAACGAGAGAAGGAGAATCTAGGGTGATCATGTTGATAGATTACAATCTTTTTTTGATGAGCGCTGTCCTCATGGATGACGTTGATCCATCTATAGAGTTTAAAGGTAAACTTAGTTGTCTTAAGGAACAAGTCAAGATATCTCAAGTCTTTCACTGTGAGGGTTTATTGTTATGCATCTTGAAAGACGATACTAGGATTGTTGTTTGGAATCCGTATAGGCAGGAAACAAGGTGGATCATACCTAGATATTCTCACCGTCCATACGTAATGAACAATATCAGATATGCTCTTGGATACGAGAATAATAAATCTGGTCGTAGCCTTAAATTATTGAGGTTTATAGATTATTGCTACACCGAAAAGCACATTTGTTGGCATGAAATCTACGATTTTGACTCTGATTTATGGACAACTCTTGATGTCACTCCACATTGGTATATATTGTCTAATTGGTCTTGTGTCCAAGGCGTCTCTCTCAAAGGGAACACTTACTGGTGTGCTAGAGAAGAAAACTCAGATGGTTACAATCATATAATCTGTTTTGATTTTACAAGAGAGAGATTTGGTCCGCTTCTGCCTCTACCGGTTAACGTTATAGATAATGAATATGAATATGTGACTTCATCTTGTGTTAGAGAAGGGAAGATTGCGGCTTTATTTCAGCACAACGATTCATATCCATATGAGCTTGAGATATGGATTACGACTAAGATTGAGGCGGAAATGGTGTCGTGGAACAAGTTCTTGAGAATTGACATTGAACCTAACAATAACATAATGGTTCCATTTATATATGGGGGTTTCTTCATTGACGAGGAGAAGAAGAAAGTCGCCTTGGGGTTTGATGAAGAGTTCGGTCGCAAAACATTTAACATTATTGGAGAGGATGGATATTTTAGAGAATTCGATCGCATAACATTTAACATTATTGAAGAGGCTGGAGAACGTGCAGGCGTAAACTGTGGTTCATATGTGTGCTCTTATGTTCCAAGTTTGGTCCGAATTAAGAAACCTGCACAAGGCAAAAGGAAAAGACAAAGCAGTTTAGAAAAGCTTCGATTTGATCAAAACACGTGGATATTTGACAGCATTTATCAAGCCACTGCCAGTCAAATACGTAGGAGGAGGCCAACAAGATGA

Protein Analysis

430

Amino Acids

50.61

Weight (kDa)

7.06

Isoelectric Point (pI)

53.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 43 1.7e-08 F-box domain
F-box-like PF12937 2 - 40 3.3e-06 F-box-like
FBA_1 PF07734 58 - 386 3.3e-106 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1174
AciI CCGC 3 cut(s) 722, 803, 872
AclI AACGTT 1 cut(s) 744
AclWI GGATC 2 cut(s) 230, 395
AcsI RAATTY 1 cut(s) 1055
AcvI CACGTG 1 cut(s) 1227
AcyI GRCGYC 1 cut(s) 621
AfeI AGCGCT 1 cut(s) 214
AfiI CCNNNNNNNGG 2 cut(s) 46, 1172
AflII CTTAAG 1 cut(s) 272
AflIII ACRYGT 1 cut(s) 1224
AgeI ACCGGT 1 cut(s) 736
AgsI TTSAA 4 cut(s) 45, 334, 914, 1085
AjuI GAANNNNNNNTTGG 2 cut(s) 971, 1003
AluBI AGCT 3 cut(s) 120, 841, 1207
AluI AGCT 3 cut(s) 120, 841, 1207
Alw21I GWGCWC 1 cut(s) 1133
Alw26I GTCTC 1 cut(s) 628
AlwI GGATC 2 cut(s) 230, 395
Aor51HI AGCGCT 1 cut(s) 214
AoxI GGCC 1 cut(s) 1280
ApoI RAATTY 1 cut(s) 1055
AsiGI ACCGGT 1 cut(s) 736
Asp700I GAANNNNTTC 2 cut(s) 893, 1206
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 2 cut(s) 719, 1150
AsuHPI GGTGA 2 cut(s) 187, 398
AvaII GGWCC 2 cut(s) 719, 1150
BbrPI CACGTG 1 cut(s) 1227
Bbv12I GWGCWC 1 cut(s) 1133
BccI CCATC 3 cut(s) 247, 665, 1034
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BciVI GTATCC 1 cut(s) 440
BclI TGATCA 3 cut(s) 3, 177, 1216
BcoDI GTCTC 1 cut(s) 628
BfaI CTAG 4 cut(s) 171, 345, 396, 654
BfmI CTRYAG 1 cut(s) 243
BfoI RGCGCY 1 cut(s) 216
BfrI CTTAAG 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 1174
BfuI GTATCC 1 cut(s) 440
BisI GCNGC 1 cut(s) 804
BlsI GCNGC 1 cut(s) 805
Bme18I GGWCC 2 cut(s) 719, 1150
BmgT120I GGNCC 2 cut(s) 719, 1150
BmiI GGNNCC 1 cut(s) 936
BmsI GCATC 2 cut(s) 120, 336
BpmI CTGGAG 1 cut(s) 1113
BpuEI CTTGAG 3 cut(s) 279, 863, 919
BsaAI YACGTR 3 cut(s) 418, 1227, 1271
BsaBI GATNNNNATC 2 cut(s) 195, 828
BsaHI GRCGYC 1 cut(s) 621
BsaJI CCNNGG 2 cut(s) 616, 987
BsaWI WCCGGW 1 cut(s) 736
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 1172
Bse118I RCCGGY 1 cut(s) 736
Bse1I ACTGG 2 cut(s) 650, 1260
Bse8I GATNNNNATC 2 cut(s) 195, 828
BseDI CCNNGG 2 cut(s) 616, 987
BseGI GGATG 2 cut(s) 232, 1045
BseJI GATNNNNATC 2 cut(s) 195, 828
BseLI CCNNNNNNNGG 2 cut(s) 46, 1172
BseMII CTCAG 1 cut(s) 681
BseNI ACTGG 2 cut(s) 650, 1260
BseRI GAGGAG 2 cut(s) 983, 1291
BsgI GTGCAG 2 cut(s) 1122, 1152
Bsh1285I CGRYCG 2 cut(s) 1012, 1063
BshFI GGCC 1 cut(s) 1282
BshTI ACCGGT 1 cut(s) 736
BsiEI CGRYCG 2 cut(s) 1012, 1063
BsiHKAI GWGCWC 1 cut(s) 1133
BsiSI CCGG 1 cut(s) 737
BslI CCNNNNNNNGG 2 cut(s) 46, 1172
BsmAI GTCTC 1 cut(s) 628
BsmBI CGTCTC 1 cut(s) 628
BsnI GGCC 1 cut(s) 1282
Bsp1286I GDGCHC 1 cut(s) 1133
Bsp143I GATC 7 cut(s) 3, 10, 177, 235, 387, 1060, 1216
BspACI CCGC 3 cut(s) 722, 803, 872
BspANI GGCC 1 cut(s) 1282
BspCNI CTCAG 1 cut(s) 680
BspLI GGNNCC 1 cut(s) 936
BspMI ACCTGC 1 cut(s) 1174
BspPI GGATC 2 cut(s) 230, 395
BspTI CTTAAG 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 736
BsrI ACTGG 2 cut(s) 650, 1260
BssAI RCCGGY 1 cut(s) 736
BssECI CCNNGG 2 cut(s) 616, 987
BssMI GATC 7 cut(s) 3, 10, 177, 235, 387, 1060, 1216
BssNI GRCGYC 1 cut(s) 621
BssT1I CCWWGG 2 cut(s) 616, 987
Bst4CI ACNGT 3 cut(s) 308, 410, 1115
Bst6I CTCTTC 2 cut(s) 996, 1080
BstACI GRCGYC 1 cut(s) 621
BstAFI CTTAAG 1 cut(s) 272
BstBAI YACGTR 3 cut(s) 418, 1227, 1271
BstC8I GCNNGC 1 cut(s) 1105
BstDEI CTNAG 3 cut(s) 263, 667, 861
BstENI CCTNNNNNAGG 1 cut(s) 1170
BstF5I GGATG 2 cut(s) 232, 1045
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 7 cut(s) 6, 13, 180, 238, 390, 1063, 1219
BstMAI GTCTC 1 cut(s) 628
BstMBI GATC 7 cut(s) 3, 10, 177, 235, 387, 1060, 1216
BstMCI CGRYCG 2 cut(s) 1012, 1063
BstSFI CTRYAG 1 cut(s) 243
BstSNI TACGTA 2 cut(s) 418, 1271
BsuI GTATCC 1 cut(s) 440
BsuRI GGCC 1 cut(s) 1282
BtsCI GGATG 2 cut(s) 232, 1045
BtsI GCAGTG 1 cut(s) 1254
BtsIMutI CAGTG 2 cut(s) 304, 1254
BveI ACCTGC 1 cut(s) 1174
Cac8I GCNNGC 1 cut(s) 1105
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 736
Cfr13I GGNCC 2 cut(s) 719, 1150
CseI GACGC 1 cut(s) 610
CspAI ACCGGT 1 cut(s) 736
CspCI CAANNNNNGTGG 2 cut(s) 1208, 1243
CviAII CATG 4 cut(s) 55, 181, 223, 530
CviJI RGCY 8 cut(s) 120, 474, 806, 841, 1091, 1207, 1253, 1282
CviKI_1 RGCY 8 cut(s) 120, 474, 806, 841, 1091, 1207, 1253, 1282
DdeI CTNAG 3 cut(s) 263, 667, 861
DpnI GATC 7 cut(s) 5, 12, 179, 237, 389, 1062, 1218
DpnII GATC 7 cut(s) 3, 10, 177, 235, 387, 1060, 1216
DraI TTTAAA 1 cut(s) 253
Eam1104I CTCTTC 2 cut(s) 996, 1080
EarI CTCTTC 2 cut(s) 996, 1080
EciI GGCGGA 1 cut(s) 887
Eco105I TACGTA 2 cut(s) 418, 1271
Eco130I CCWWGG 2 cut(s) 616, 987
Eco32I GATATC 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 719, 1150
Eco47III AGCGCT 1 cut(s) 214
Eco72I CACGTG 1 cut(s) 1227
EcoNI CCTNNNNNAGG 1 cut(s) 1170
EcoRI GAATTC 1 cut(s) 1055
EcoRV GATATC 1 cut(s) 291
EcoT14I CCWWGG 2 cut(s) 616, 987
EcoT22I ATGCAT 1 cut(s) 329
ErhI CCWWGG 2 cut(s) 616, 987
Esp3I CGTCTC 1 cut(s) 628
FaeI CATG 4 cut(s) 58, 184, 226, 533
FalI AAGNNNNNCTT 4 cut(s) 24, 56, 246, 278
FatI CATG 4 cut(s) 54, 180, 222, 529
FauNDI CATATG 2 cut(s) 835, 1123
FbaI TGATCA 3 cut(s) 3, 177, 1216
Fnu4HI GCNGC 1 cut(s) 804
FokI GGATG 2 cut(s) 239, 1052
Fsp4HI GCNGC 1 cut(s) 804
FspBI CTAG 4 cut(s) 171, 345, 396, 654
GlaI GCGC 1 cut(s) 214
GluI GCNGC 1 cut(s) 804
GsuI CTGGAG 1 cut(s) 1113
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 1 cut(s) 1282
HapII CCGG 1 cut(s) 737
HgaI GACGC 1 cut(s) 610
HhaI GCGC 1 cut(s) 215
Hin1I GRCGYC 1 cut(s) 621
Hin1II CATG 4 cut(s) 58, 184, 226, 533
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HindIII AAGCTT 1 cut(s) 1205
HinfI GANTC 4 cut(s) 167, 361, 548, 824
HpaI GTTAAC 1 cut(s) 742
HpaII CCGG 1 cut(s) 737
HphI GGTGA 2 cut(s) 187, 398
Hpy166II GTNNAC 3 cut(s) 260, 742, 1111
Hpy188I TCNGA 4 cut(s) 434, 553, 670, 1154
Hpy188III TCNNGA 4 cut(s) 286, 331, 569, 898
Hpy8I GTNNAC 3 cut(s) 260, 742, 1111
HpyAV CCTTC 2 cut(s) 155, 785
HpyCH4III ACNGT 3 cut(s) 308, 410, 1115
HpyCH4IV ACGT 6 cut(s) 231, 417, 744, 1099, 1226, 1270
HpyCH4V TGCA 5 cut(s) 87, 133, 327, 1103, 1169
HpyF3I CTNAG 3 cut(s) 263, 667, 861
HpySE526I ACGT 6 cut(s) 231, 417, 744, 1099, 1226, 1270
Hsp92I GRCGYC 1 cut(s) 621
Hsp92II CATG 4 cut(s) 58, 184, 226, 533
HspAI GCGC 1 cut(s) 213
Ksp22I TGATCA 3 cut(s) 3, 177, 1216
KspAI GTTAAC 1 cut(s) 742
Kzo9I GATC 7 cut(s) 3, 10, 177, 235, 387, 1060, 1216
LpnPI CCDG 8 cut(s) 359, 450, 631, 750, 1077, 1089, 1179, 1273
LweI GCATC 2 cut(s) 120, 336
MaeI CTAG 4 cut(s) 171, 345, 396, 654
MaeII ACGT 6 cut(s) 231, 417, 744, 1099, 1226, 1270
MaeIII GTNAC 4 cut(s) 145, 574, 674, 769
MalI GATC 7 cut(s) 5, 12, 179, 237, 389, 1062, 1218
MboI GATC 7 cut(s) 3, 10, 177, 235, 387, 1060, 1216
MhlI GDGCHC 1 cut(s) 1133
MluCI AATT 5 cut(s) 479, 601, 903, 1055, 1155
MlyI GAGTC 1 cut(s) 542
MmeI TCCRAC 1 cut(s) 74
Mph1103I ATGCAT 1 cut(s) 329
MroXI GAANNNNTTC 2 cut(s) 893, 1206
MseI TTAA 9 cut(s) 80, 123, 252, 273, 477, 741, 1023, 1074, 1158
MslI CAYNNNNRTG 1 cut(s) 1126
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 1 cut(s) 737
NdeI CATATG 2 cut(s) 835, 1123
NdeII GATC 7 cut(s) 3, 10, 177, 235, 387, 1060, 1216
NlaIII CATG 4 cut(s) 58, 184, 226, 533
NlaIV GGNNCC 1 cut(s) 936
NmuCI GTSAC 2 cut(s) 574, 769
NsiI ATGCAT 1 cut(s) 329
PdmI GAANNNNTTC 2 cut(s) 893, 1206
PfeI GAWTC 3 cut(s) 167, 361, 824
PinAI ACCGGT 1 cut(s) 736
PkrI GCNGC 1 cut(s) 805
Ple19I CGATCG 1 cut(s) 1063
PleI GAGTC 1 cut(s) 542
PmaCI CACGTG 1 cut(s) 1227
PmlI CACGTG 1 cut(s) 1227
PpsI GAGTC 1 cut(s) 542
Ppu21I YACGTR 3 cut(s) 418, 1227, 1271
Psp1406I AACGTT 1 cut(s) 744
PspCI CACGTG 1 cut(s) 1227
PspN4I GGNNCC 1 cut(s) 936
PspPI GGNCC 2 cut(s) 719, 1150
PvuI CGATCG 1 cut(s) 1063
RseI CAYNNNNRTG 1 cut(s) 1126
SaqAI TTAA 9 cut(s) 80, 123, 252, 273, 477, 741, 1023, 1074, 1158
SatI GCNGC 1 cut(s) 804
Sau3AI GATC 7 cut(s) 3, 10, 177, 235, 387, 1060, 1216
Sau96I GGNCC 2 cut(s) 719, 1150
SchI GAGTC 1 cut(s) 542
SduI GDGCHC 1 cut(s) 1133
SfaNI GCATC 2 cut(s) 120, 336
SfcI CTRYAG 1 cut(s) 243
SinI GGWCC 2 cut(s) 719, 1150
SmiMI CAYNNNNRTG 1 cut(s) 1126
SmlI CTYRAG 4 cut(s) 272, 294, 842, 898
SmoI CTYRAG 4 cut(s) 272, 294, 842, 898
SnaBI TACGTA 2 cut(s) 418, 1271
Sse9I AATT 5 cut(s) 479, 601, 903, 1055, 1155
SsiI CCGC 3 cut(s) 722, 803, 872
SspMI CTAG 4 cut(s) 171, 345, 396, 654
StyI CCWWGG 2 cut(s) 616, 987
TaaI ACNGT 3 cut(s) 308, 410, 1115
TaiI ACGT 6 cut(s) 234, 420, 747, 1102, 1229, 1273
TaqI TCGA 2 cut(s) 1059, 1210
TaqII GACCGA 1 cut(s) 998
TasI AATT 5 cut(s) 479, 601, 903, 1055, 1155
TauI GCSGC 1 cut(s) 806
TfiI GAWTC 3 cut(s) 167, 361, 824
Tru1I TTAA 9 cut(s) 80, 123, 252, 273, 477, 741, 1023, 1074, 1158
Tru9I TTAA 9 cut(s) 80, 123, 252, 273, 477, 741, 1023, 1074, 1158
TscAI CASTG 2 cut(s) 311, 1261
TseFI GTSAC 2 cut(s) 574, 769
Tsp45I GTSAC 2 cut(s) 574, 769
TspDTI ATGAA 9 cut(s) 437, 546, 765, 771, 777, 816, 949, 1014, 1110
TspGWI ACGGA 1 cut(s) 354
TspRI CASTG 2 cut(s) 311, 1261
Vha464I CTTAAG 1 cut(s) 272
VpaK11BI GGWCC 2 cut(s) 719, 1150
XagI CCTNNNNNAGG 1 cut(s) 1170
XapI RAATTY 1 cut(s) 1055
XmnI GAANNNNTTC 2 cut(s) 893, 1206
XspI CTAG 4 cut(s) 171, 345, 396, 654
Zsp2I ATGCAT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.