AT1G47390

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Forward (+)
17379544 .. 17380656
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47390.1

Sequence Viewer

Length: 1113 bp
ATGGCTCCTGAGGAGAAGCTTCCGTGTGAACTGATTGAAGAGATACTCTCTCGTGTCCCTCCTGAATCTCTTGTTCGCTTCAGAACCGTTTCTAAGAAATGGAACGCCCTCTTCGACGATAAGATGTTCATTAACAACCACAAGATGACATTTCGATTCATCTTAGCAACCGAATCTAAGTTCTACTCGGTAAGCATGACTCCAAAGATAGAAGTGCGTGAGTTAAGTTTGGATATTCCCGGTTTAGAACTTAAACCTAAAATTTTGATTGATTGCAATGGGTTCTTGCTATGTGGCATGGAAAAAGAAGGCATCGTGGTTTGGAACCCGTGGTTAAGACAGGCTAAATGGATAAAGCCAAAGGTAAACCAACCTAGTTTGTGTTTCAATGGCATAGGTTATGAGTATGATAACATGAAACTTGAGAGTAGTGGTTACAAGACCCTTGTGTCTTATCCTAATGAATTAGACCCTACTAGATCAGTTTGGAAAATCCATGACTTTGCCTCCAATTCATGGAAATATACAAATTTGGTCATGAGTTGTAGTAGTGGTGTTACTTTATTCGGTGCAAGTGTATCACTGAATGGAATTTTGTATTGGGTTGCCTCTCATCTAAAGAATAATTCCTTGTTCGTCCTGGTTTACTACAATTTTTCCAATGAAAAGGTCTACAAGTTTTCTGATCTACCATGTGGGGAGAACCATCATCACGATGTTCTTGTTCTTAGGATTTTTAGGGAAGATCGGCTTTCGTTGTTAAAGCAATGCCATCTAACAAAGAAGATTGAGATTTGGGTGACCAAGAACAAGATTAGAAACTGCTCTAGTGGAGATGTGGATTCAGCGGAATGGATGAATTTCATGGAAGTGTCAACTCTTAACTTGCCGGTTTTAGTACACCCAAGTTACTTCATCGACGATAAAAAGCTCGTTGTGTGTTCTTGCGACCAAACTGGCCAAGCTTGGATCTATGTTGTGGGGGACAATAAGTTGATCAGTAAAATTCAAATAGATTCTGTGGTTGGTCCCTGGCCTTTGCATTGTAGCTTTTTCCCCAGTTTGGTCTCAATACCTCGAAGTCAAACTAAAAAAGCAGCATTACAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

370

Amino Acids

42.51

Weight (kDa)

8.51

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 43 2.1e-10 F-box domain
F-box-like PF12937 6 - 40 3.2e-07 F-box-like
FBA_1 PF07734 53 - 358 2.2e-77 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 448
AccB7I CCANNNNNTGG 1 cut(s) 516
AccI GTMKAC 1 cut(s) 672
AciI CCGC 1 cut(s) 848
AclWI GGATC 1 cut(s) 977
AcoI YGGCCR 1 cut(s) 958
AcsI RAATTY 5 cut(s) 261, 529, 591, 859, 1005
AcuI CTGAAG 1 cut(s) 64
AfaI GTAC 1 cut(s) 900
AfiI CCNNNNNNNGG 2 cut(s) 516, 1063
AgsI TTSAA 3 cut(s) 38, 388, 1010
AjnI CCWGG 2 cut(s) 639, 1031
AjuI GAANNNNNNNTTGG 2 cut(s) 583, 615
AluBI AGCT 4 cut(s) 19, 931, 965, 1050
AluI AGCT 4 cut(s) 19, 931, 965, 1050
Alw26I GTCTC 1 cut(s) 1072
AlwI GGATC 1 cut(s) 977
AoxI GGCC 2 cut(s) 958, 1034
ApeKI GCWGC 1 cut(s) 1097
ApoI RAATTY 5 cut(s) 261, 529, 591, 859, 1005
Asp700I GAANNNNTTC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 1028
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 811
AvaII GGWCC 1 cut(s) 1028
AxyI CCTNAGG 1 cut(s) 9
BalI TGGCCA 1 cut(s) 960
BauI CACGAG 1 cut(s) 51
BbvI GCAGC 1 cut(s) 1109
BccI CCATC 2 cut(s) 714, 780
BciT130I CCWGG 2 cut(s) 641, 1033
BclI TGATCA 1 cut(s) 996
BcnI CCSGG 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 1072
BfaI CTAG 3 cut(s) 375, 477, 828
BisI GCNGC 1 cut(s) 1098
BlsI GCNGC 1 cut(s) 1099
Bme1390I CCNGG 3 cut(s) 240, 641, 1033
Bme18I GGWCC 1 cut(s) 1028
BmgT120I GGNCC 1 cut(s) 1028
BmiI GGNNCC 3 cut(s) 6, 326, 1030
BmrFI CCNGG 3 cut(s) 240, 641, 1033
BmrI ACTGGG 1 cut(s) 1053
BmsI GCATC 1 cut(s) 321
BmuI ACTGGG 1 cut(s) 1053
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 1072
BsaJI CCNNGG 2 cut(s) 329, 1031
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 2 cut(s) 516, 1063
Bse118I RCCGGY 1 cut(s) 889
Bse1I ACTGG 2 cut(s) 961, 1059
Bse21I CCTNAGG 1 cut(s) 9
Bse3DI GCAATG 2 cut(s) 283, 773
BseBI CCWGG 2 cut(s) 641, 1033
BseDI CCNNGG 2 cut(s) 329, 1031
BseGI GGATG 1 cut(s) 861
BseLI CCNNNNNNNGG 2 cut(s) 516, 1063
BseMI GCAATG 2 cut(s) 283, 773
BseNI ACTGG 2 cut(s) 961, 1059
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 1109
BshFI GGCC 2 cut(s) 960, 1036
BsiSI CCGG 2 cut(s) 240, 890
BslFI GGGAC 3 cut(s) 41, 998, 1014
BslI CCNNNNNNNGG 2 cut(s) 516, 1063
BsmAI GTCTC 1 cut(s) 1072
BsmFI GGGAC 3 cut(s) 41, 998, 1014
BsnI GGCC 2 cut(s) 960, 1036
Bso31I GGTCTC 1 cut(s) 1072
Bsp143I GATC 5 cut(s) 479, 685, 745, 969, 996
BspACI CCGC 1 cut(s) 848
BspANI GGCC 2 cut(s) 960, 1036
BspHI TCATGA 1 cut(s) 537
BspLI GGNNCC 3 cut(s) 6, 326, 1030
BspPI GGATC 1 cut(s) 977
BspTNI GGTCTC 1 cut(s) 1072
BsrDI GCAATG 2 cut(s) 283, 773
BsrFI RCCGGY 1 cut(s) 889
BsrI ACTGG 2 cut(s) 961, 1059
BssAI RCCGGY 1 cut(s) 889
BssECI CCNNGG 2 cut(s) 329, 1031
BssMI GATC 5 cut(s) 479, 685, 745, 969, 996
BssSI CACGAG 1 cut(s) 51
Bst2BI CACGAG 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 641, 1033
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 2 cut(s) 33, 116
BstDEI CTNAG 5 cut(s) 9, 93, 163, 177, 728
BstDSI CCRYGG 1 cut(s) 329
BstEII GGTNACC 1 cut(s) 799
BstF5I GGATG 1 cut(s) 861
BstKTI GATC 5 cut(s) 482, 688, 748, 972, 999
BstMAI GTCTC 1 cut(s) 1072
BstMBI GATC 5 cut(s) 479, 685, 745, 969, 996
BstNI CCWGG 2 cut(s) 641, 1033
BstPI GGTNACC 1 cut(s) 799
BstSCI CCNGG 3 cut(s) 238, 639, 1031
BstV1I GCAGC 1 cut(s) 1109
BstX2I RGATCY 1 cut(s) 969
BstYI RGATCY 1 cut(s) 969
Bsu36I CCTNAGG 1 cut(s) 9
BsuRI GGCC 2 cut(s) 960, 1036
BtgI CCRYGG 1 cut(s) 329
BtsCI GGATG 1 cut(s) 861
BtsIMutI CAGTG 1 cut(s) 581
CciI TCATGA 1 cut(s) 537
Cfr10I RCCGGY 1 cut(s) 889
Cfr13I GGNCC 1 cut(s) 1028
Csp6I GTAC 1 cut(s) 899
CviAII CATG 8 cut(s) 196, 298, 415, 497, 516, 538, 693, 865
CviQI GTAC 1 cut(s) 899
DdeI CTNAG 5 cut(s) 9, 93, 163, 177, 728
DpnI GATC 5 cut(s) 481, 687, 747, 971, 998
DpnII GATC 5 cut(s) 479, 685, 745, 969, 996
DrdI GACNNNNNNGTC 1 cut(s) 448
DseDI GACNNNNNNGTC 1 cut(s) 448
EaeI YGGCCR 1 cut(s) 958
Eam1104I CTCTTC 2 cut(s) 33, 116
EarI CTCTTC 2 cut(s) 33, 116
Eco31I GGTCTC 1 cut(s) 1072
Eco47I GGWCC 1 cut(s) 1028
Eco57I CTGAAG 1 cut(s) 64
Eco81I CCTNAGG 1 cut(s) 9
Eco91I GGTNACC 1 cut(s) 799
EcoO65I GGTNACC 1 cut(s) 799
EcoRII CCWGG 2 cut(s) 639, 1031
FaeI CATG 8 cut(s) 199, 301, 418, 500, 519, 541, 696, 868
FalI AAGNNNNNCTT 2 cut(s) 735, 767
FaqI GGGAC 3 cut(s) 41, 998, 1014
FatI CATG 8 cut(s) 195, 297, 414, 496, 515, 537, 692, 864
FbaI TGATCA 1 cut(s) 996
FblI GTMKAC 1 cut(s) 672
Fnu4HI GCNGC 1 cut(s) 1098
FokI GGATG 1 cut(s) 868
Fsp4HI GCNGC 1 cut(s) 1098
FspBI CTAG 3 cut(s) 375, 477, 828
GluI GCNGC 1 cut(s) 1098
HaeIII GGCC 2 cut(s) 960, 1036
HapII CCGG 2 cut(s) 240, 890
Hin1II CATG 8 cut(s) 199, 301, 418, 500, 519, 541, 696, 868
HincII GTYRAC 1 cut(s) 876
HindII GTYRAC 1 cut(s) 876
HindIII AAGCTT 2 cut(s) 17, 963
HinfI GANTC 6 cut(s) 65, 156, 173, 199, 842, 1016
HpaII CCGG 2 cut(s) 240, 890
HphI GGTGA 1 cut(s) 811
Hpy166II GTNNAC 6 cut(s) 29, 367, 646, 673, 876, 901
Hpy188I TCNGA 2 cut(s) 83, 685
Hpy188III TCNNGA 4 cut(s) 8, 62, 538, 713
Hpy8I GTNNAC 6 cut(s) 29, 367, 646, 673, 876, 901
Hpy99I CGWCG 2 cut(s) 119, 923
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 3 cut(s) 276, 572, 1042
HpyF3I CTNAG 5 cut(s) 9, 93, 163, 177, 728
Hsp92II CATG 8 cut(s) 199, 301, 418, 500, 519, 541, 696, 868
Ksp22I TGATCA 1 cut(s) 996
Kzo9I GATC 5 cut(s) 479, 685, 745, 969, 996
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 1 cut(s) 1109
LweI GCATC 1 cut(s) 321
MaeI CTAG 3 cut(s) 375, 477, 828
MaeIII GTNAC 4 cut(s) 434, 556, 799, 908
MalI GATC 5 cut(s) 481, 687, 747, 971, 998
MboI GATC 5 cut(s) 479, 685, 745, 969, 996
MboII GAAGA 4 cut(s) 50, 103, 755, 796
MflI RGATCY 1 cut(s) 969
MlsI TGGCCA 1 cut(s) 960
MluCI AATT 9 cut(s) 261, 464, 511, 529, 591, 625, 652, 859, 1005
MluNI TGGCCA 1 cut(s) 960
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 6 cut(s) 4, 69, 119, 517, 619, 1086
Mox20I TGGCCA 1 cut(s) 960
MroXI GAANNNNTTC 1 cut(s) 88
MscI TGGCCA 1 cut(s) 960
MseI TTAA 6 cut(s) 132, 224, 252, 335, 761, 882
MslI CAYNNNNRTG 2 cut(s) 714, 869
Msp20I TGGCCA 1 cut(s) 960
MspA1I CMGCKG 1 cut(s) 848
MspI CCGG 2 cut(s) 240, 890
MspR9I CCNGG 3 cut(s) 240, 641, 1033
MvaI CCWGG 2 cut(s) 641, 1033
NciI CCSGG 1 cut(s) 240
NdeII GATC 5 cut(s) 479, 685, 745, 969, 996
NlaIII CATG 8 cut(s) 199, 301, 418, 500, 519, 541, 696, 868
NlaIV GGNNCC 3 cut(s) 6, 326, 1030
NmuCI GTSAC 1 cut(s) 799
PagI TCATGA 1 cut(s) 537
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 88
PfeI GAWTC 5 cut(s) 65, 156, 173, 842, 1016
PflMI CCANNNNNTGG 1 cut(s) 516
PkrI GCNGC 1 cut(s) 1099
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 639, 1031
PspEI GGTNACC 1 cut(s) 799
PspGI CCWGG 2 cut(s) 639, 1031
PspN4I GGNNCC 3 cut(s) 6, 326, 1030
PspPI GGNCC 1 cut(s) 1028
PsuI RGATCY 1 cut(s) 969
RsaI GTAC 1 cut(s) 900
RsaNI GTAC 1 cut(s) 899
RseI CAYNNNNRTG 2 cut(s) 714, 869
SaqAI TTAA 6 cut(s) 132, 224, 252, 335, 761, 882
SatI GCNGC 1 cut(s) 1098
Sau3AI GATC 5 cut(s) 479, 685, 745, 969, 996
Sau96I GGNCC 1 cut(s) 1028
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 3 cut(s) 240, 641, 1033
SfaNI GCATC 1 cut(s) 321
SinI GGWCC 1 cut(s) 1028
SmiMI CAYNNNNRTG 2 cut(s) 714, 869
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 9 cut(s) 261, 464, 511, 529, 591, 625, 652, 859, 1005
SsiI CCGC 1 cut(s) 848
SspMI CTAG 3 cut(s) 375, 477, 828
StyD4I CCNGG 3 cut(s) 238, 639, 1031
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 4 cut(s) 114, 154, 918, 1078
TasI AATT 9 cut(s) 261, 464, 511, 529, 591, 625, 652, 859, 1005
TatI WGTACW 1 cut(s) 898
TfiI GAWTC 5 cut(s) 65, 156, 173, 842, 1016
Tru1I TTAA 6 cut(s) 132, 224, 252, 335, 761, 882
Tru9I TTAA 6 cut(s) 132, 224, 252, 335, 761, 882
TscAI CASTG 1 cut(s) 588
TseFI GTSAC 1 cut(s) 799
TseI GCWGC 1 cut(s) 1097
Tsp45I GTSAC 1 cut(s) 799
TspDTI ATGAA 9 cut(s) 118, 148, 431, 477, 504, 678, 853, 872, 904
TspGWI ACGGA 1 cut(s) 12
TspRI CASTG 1 cut(s) 588
Van91I CCANNNNNTGG 1 cut(s) 516
VpaK11BI GGWCC 1 cut(s) 1028
XapI RAATTY 5 cut(s) 261, 529, 591, 859, 1005
XmiI GTMKAC 1 cut(s) 672
XmnI GAANNNNTTC 1 cut(s) 88
XspI CTAG 3 cut(s) 375, 477, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.