AT3G21130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
7408246 .. 7409349
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21130.1

Sequence Viewer

Length: 1104 bp
ATGATGAAGAAGAGAAACACAGTTTATCTTTCGGAGGATTTGATAGTGGAGATACTCTCTAGAGTTTCGGCTGTATCTTTGGCACGATTACGAACTACATCCAAACGATGGAACGCTCTTGTTAAGGACGAGAGACTTGCTAAGAAGCACTCTGCTTATGCTCCAAGGCAGTCTCTGGTTATCACGTTGATTGATTCCAGGGTTTATTTAATGAACGTGAGTCTCCAATATGGAATTGAAAAGGTTGATCTATCTGCAAAGCTAACAGGTCAATTCAGCCTAAAAGATCCTCTTTCAAATTCTTTAGAGGAAGTTGATATACGTAACGTCTTTCACTGCGACGGCTTATTACTATGCAGCACCAAAGACAATAGATTAGTTGTTTGGAATCCATGTTCAGGTGAAACAAGGTGGATCCAACCTAGAAGTTCCTACAAGGTATCAGACATCTATGCTTTAGGTTATGATAACACATCCTCATGTCACAAAATCTTGAGGATGGATCGATCTGAGGACCGTATCCCAATTCAAACTGAGTACCAAGTCTATGACTTTACCTCTAAATCGTGGCTAGTTGATGGTGTGGCTGGAGGCTTGTTCATACCAAGTATTGGGACTCGGAGACGTGGCTTGTCTGTGAAGGGAAATACTTACTGGCTTGCTCTTACTGAAGACGGACCGCCATTTGATATGTTCTTATTATGTTTTGATTTTTCGACTGACGGATTTCGACGTCTGTCTCTTCCGACGGATACTCCTTGTACTTATTATGATGTGTCTTTATCAGTGACTAGAGAAGAGCAACAACTTTGTATGTTTAAGAGTCATGGCTCTGAGTTATGGATAGCAACTAAGATGGAGAGTACCGGAGCCATTTCATGGAGCAAGTCCCATCGTTTTCACTTTAGAATTGATGAGATGACTGTCTTGGCTGACCAAGAGAAGCCCGTTTTCGTGTATCGCTTCAAACCCAAGTCCAACATGTTACACATTGTGGGAGAGCATATATACATCATACAAGTGGATCAGCATAGTGCAGATTCTAAATGTCCATATCTCCTTACTTATGTTCCAAGTTTGGTTCAAATCCAACAAAGTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

367

Amino Acids

42.12

Weight (kDa)

8.5

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 47 1.5e-08 F-box domain
F-box-like PF12937 13 - 49 9.5e-07 F-box-like
FBA_1 PF07734 60 - 363 1.6e-86 F-box associated beta propeller domain
FBA_3 PF08268 111 - 298 2.2e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 736
AccB7I CCANNNNNTGG 3 cut(s) 108, 611, 879
AciI CCGC 1 cut(s) 680
AclWI GGATC 5 cut(s) 281, 409, 422, 510, 1032
AcsI RAATTY 1 cut(s) 298
AcuI CTGAAG 1 cut(s) 690
AcyI GRCGYC 1 cut(s) 733
AdeI CACNNNGTG 1 cut(s) 994
AfaI GTAC 3 cut(s) 539, 763, 865
AfiI CCNNNNNNNGG 4 cut(s) 108, 398, 611, 879
AflIII ACRYGT 1 cut(s) 981
AgsI TTSAA 5 cut(s) 239, 297, 530, 967, 1085
AjiI CACGTC 1 cut(s) 626
AjnI CCWGG 1 cut(s) 197
AloI GAACNNNNNNTCC 2 cut(s) 379, 411
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
Alw26I GTCTC 5 cut(s) 127, 177, 227, 616, 744
AlwI GGATC 5 cut(s) 281, 409, 422, 510, 1032
AlwNI CAGNNNCTG 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 357
ApoI RAATTY 1 cut(s) 298
AspS9I GGNCC 2 cut(s) 514, 677
AsuHPI GGTGA 1 cut(s) 413
AvaII GGWCC 2 cut(s) 514, 677
BamHI GGATCC 1 cut(s) 414
BarI GAAGNNNNNNTAC 2 cut(s) 303, 335
BbsI GAAGAC 1 cut(s) 678
BbvI GCAGC 1 cut(s) 369
BccI CCATC 5 cut(s) 102, 493, 572, 850, 900
BceAI ACGGC 1 cut(s) 358
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BciT130I CCWGG 1 cut(s) 199
BciVI GTATCC 2 cut(s) 530, 745
BcoDI GTCTC 5 cut(s) 127, 177, 227, 616, 744
BfaI CTAG 4 cut(s) 60, 423, 572, 792
BfuI GTATCC 2 cut(s) 530, 745
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme1390I CCNGG 1 cut(s) 199
Bme18I GGWCC 2 cut(s) 514, 677
BmgBI CACGTC 1 cut(s) 626
BmgT120I GGNCC 2 cut(s) 514, 677
BmiI GGNNCC 2 cut(s) 416, 871
BmrFI CCNGG 1 cut(s) 199
BoxI GACNNNNGTC 1 cut(s) 736
BpiI GAAGAC 1 cut(s) 678
BplI GAGNNNNNCTC 2 cut(s) 41, 73
BpmI CTGGAG 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 514
Bsa29I ATCGAT 1 cut(s) 505
BsaAI YACGTR 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 733
BsaJI CCNNGG 2 cut(s) 164, 198
BsaWI WCCGGW 1 cut(s) 866
BsaXI ACNNNNNCTCC 2 cut(s) 739, 769
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 398, 611, 879
Bse1I ACTGG 1 cut(s) 659
BseBI CCWGG 1 cut(s) 199
BseCI ATCGAT 1 cut(s) 505
BseDI CCNNGG 2 cut(s) 164, 198
BseGI GGATG 3 cut(s) 98, 473, 504
BseLI CCNNNNNNNGG 4 cut(s) 108, 398, 611, 879
BseMII CTCAG 3 cut(s) 501, 525, 825
BseNI ACTGG 1 cut(s) 659
BseXI GCAGC 1 cut(s) 369
BsgI GTGCAG 1 cut(s) 1056
BshVI ATCGAT 1 cut(s) 505
BsiSI CCGG 1 cut(s) 867
BslFI GGGAC 2 cut(s) 628, 874
BslI CCNNNNNNNGG 4 cut(s) 108, 398, 611, 879
BsmAI GTCTC 5 cut(s) 127, 177, 227, 616, 744
BsmBI CGTCTC 1 cut(s) 616
BsmFI GGGAC 2 cut(s) 628, 874
Bsp143I GATC 6 cut(s) 247, 286, 414, 502, 506, 1024
BspACI CCGC 1 cut(s) 680
BspCNI CTCAG 3 cut(s) 502, 526, 826
BspDI ATCGAT 1 cut(s) 505
BspLI GGNNCC 2 cut(s) 416, 871
BspPI GGATC 5 cut(s) 281, 409, 422, 510, 1032
BspQI GCTCTTC 1 cut(s) 792
BsrI ACTGG 1 cut(s) 659
BssECI CCNNGG 2 cut(s) 164, 198
BssMI GATC 6 cut(s) 247, 286, 414, 502, 506, 1024
BssNI GRCGYC 1 cut(s) 733
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 3 cut(s) 22, 518, 925
Bst6I CTCTTC 3 cut(s) 5, 747, 792
BstACI GRCGYC 1 cut(s) 733
BstBAI YACGTR 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 660
BstDEI CTNAG 5 cut(s) 141, 510, 534, 834, 852
BstF5I GGATG 3 cut(s) 98, 473, 504
BstKTI GATC 6 cut(s) 250, 289, 417, 505, 509, 1027
BstMAI GTCTC 5 cut(s) 127, 177, 227, 616, 744
BstMBI GATC 6 cut(s) 247, 286, 414, 502, 506, 1024
BstNI CCWGG 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 985
BstPAI GACNNNNGTC 1 cut(s) 736
BstSCI CCNGG 1 cut(s) 197
BstSNI TACGTA 1 cut(s) 323
BstV1I GCAGC 1 cut(s) 369
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 2 cut(s) 286, 414
BstYI RGATCY 2 cut(s) 286, 414
Bsu15I ATCGAT 1 cut(s) 505
BsuI GTATCC 2 cut(s) 530, 745
BsuTUI ATCGAT 1 cut(s) 505
BtrI CACGTC 1 cut(s) 626
BtsCI GGATG 3 cut(s) 98, 473, 504
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 2 cut(s) 334, 792
Cac8I GCNNGC 1 cut(s) 660
CaiI CAGNNNCTG 1 cut(s) 175
Cfr13I GGNCC 2 cut(s) 514, 677
ClaI ATCGAT 1 cut(s) 505
CpoI CGGWCCG 1 cut(s) 677
Csp6I GTAC 3 cut(s) 538, 762, 864
CspI CGGWCCG 1 cut(s) 677
CviAII CATG 5 cut(s) 393, 480, 827, 879, 982
CviQI GTAC 3 cut(s) 538, 762, 864
DdeI CTNAG 5 cut(s) 141, 510, 534, 834, 852
DpnI GATC 6 cut(s) 249, 288, 416, 504, 508, 1026
DpnII GATC 6 cut(s) 247, 286, 414, 502, 506, 1024
DraIII CACNNNGTG 1 cut(s) 994
Eam1104I CTCTTC 3 cut(s) 5, 747, 792
EarI CTCTTC 3 cut(s) 5, 747, 792
Eco105I TACGTA 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 514, 677
Eco57I CTGAAG 1 cut(s) 690
EcoRII CCWGG 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 616
FaeI CATG 5 cut(s) 396, 483, 830, 882, 985
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 2 cut(s) 628, 874
FatI CATG 5 cut(s) 392, 479, 826, 878, 981
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 3 cut(s) 85, 460, 511
Fsp4HI GCNGC 1 cut(s) 358
FspBI CTAG 4 cut(s) 60, 423, 572, 792
GluI GCNGC 1 cut(s) 358
GsuI CTGGAG 1 cut(s) 609
HapII CCGG 1 cut(s) 867
Hin1I GRCGYC 1 cut(s) 733
Hin1II CATG 5 cut(s) 396, 483, 830, 882, 985
HinfI GANTC 6 cut(s) 194, 220, 388, 616, 823, 1040
HpaII CCGG 1 cut(s) 867
HphI GGTGA 1 cut(s) 413
Hpy188I TCNGA 6 cut(s) 34, 445, 511, 621, 747, 835
Hpy188III TCNNGA 2 cut(s) 60, 493
Hpy99I CGWCG 3 cut(s) 344, 735, 751
HpyAV CCTTC 1 cut(s) 634
HpyCH4III ACNGT 3 cut(s) 22, 518, 925
HpyCH4IV ACGT 6 cut(s) 185, 216, 322, 327, 625, 733
HpyCH4V TGCA 3 cut(s) 257, 357, 1037
HpyF3I CTNAG 5 cut(s) 141, 510, 534, 834, 852
HpySE526I ACGT 6 cut(s) 185, 216, 322, 327, 625, 733
Hsp92I GRCGYC 1 cut(s) 733
Hsp92II CATG 5 cut(s) 396, 483, 830, 882, 985
Kzo9I GATC 6 cut(s) 247, 286, 414, 502, 506, 1024
LguI GCTCTTC 1 cut(s) 792
LmnI GCTCC 3 cut(s) 166, 869, 882
LpnPI CCDG 8 cut(s) 161, 184, 211, 252, 384, 573, 640, 880
Lsp1109I GCAGC 1 cut(s) 369
MaeI CTAG 4 cut(s) 60, 423, 572, 792
MaeII ACGT 6 cut(s) 185, 216, 322, 327, 625, 733
MaeIII GTNAC 4 cut(s) 323, 482, 787, 984
MalI GATC 6 cut(s) 249, 288, 416, 504, 508, 1026
MboI GATC 6 cut(s) 247, 286, 414, 502, 506, 1024
MboII GAAGA 5 cut(s) 19, 22, 683, 734, 809
MflI RGATCY 2 cut(s) 286, 414
MluCI AATT 5 cut(s) 234, 272, 298, 525, 909
MlyI GAGTC 3 cut(s) 229, 610, 832
MmeI TCCRAC 3 cut(s) 442, 770, 1002
MnlI CCTC 8 cut(s) 28, 300, 301, 487, 489, 505, 568, 584
MseI TTAA 3 cut(s) 123, 209, 819
MslI CAYNNNNRTG 2 cut(s) 478, 1019
MspI CCGG 1 cut(s) 867
MspR9I CCNGG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 199
NdeII GATC 6 cut(s) 247, 286, 414, 502, 506, 1024
NlaIII CATG 5 cut(s) 396, 483, 830, 882, 985
NlaIV GGNNCC 2 cut(s) 416, 871
NmuCI GTSAC 2 cut(s) 482, 787
NspI RCATGY 1 cut(s) 985
PciI ACATGT 1 cut(s) 981
PciSI GCTCTTC 1 cut(s) 792
PfeI GAWTC 3 cut(s) 194, 388, 1040
PflMI CCANNNNNTGG 3 cut(s) 108, 611, 879
PkrI GCNGC 1 cut(s) 359
PleI GAGTC 3 cut(s) 228, 610, 831
PpsI GAGTC 3 cut(s) 228, 610, 831
Ppu21I YACGTR 1 cut(s) 323
PscI ACATGT 1 cut(s) 981
PshAI GACNNNNGTC 1 cut(s) 736
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 416, 871
PspPI GGNCC 2 cut(s) 514, 677
PstNI CAGNNNCTG 1 cut(s) 175
PsuI RGATCY 2 cut(s) 286, 414
RsaI GTAC 3 cut(s) 539, 763, 865
RsaNI GTAC 3 cut(s) 538, 762, 864
RseI CAYNNNNRTG 2 cut(s) 478, 1019
Rsr2I CGGWCCG 1 cut(s) 677
RsrII CGGWCCG 1 cut(s) 677
SapI GCTCTTC 1 cut(s) 792
SaqAI TTAA 3 cut(s) 123, 209, 819
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 6 cut(s) 247, 286, 414, 502, 506, 1024
Sau96I GGNCC 2 cut(s) 514, 677
SchI GAGTC 3 cut(s) 229, 610, 832
ScrFI CCNGG 1 cut(s) 199
SinI GGWCC 2 cut(s) 514, 677
SmiMI CAYNNNNRTG 2 cut(s) 478, 1019
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
SnaBI TACGTA 1 cut(s) 323
Sse9I AATT 5 cut(s) 234, 272, 298, 525, 909
SsiI CCGC 1 cut(s) 680
SspMI CTAG 4 cut(s) 60, 423, 572, 792
StyD4I CCNGG 1 cut(s) 197
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 3 cut(s) 22, 518, 925
TaiI ACGT 6 cut(s) 188, 219, 325, 330, 628, 736
TaqI TCGA 3 cut(s) 505, 716, 730
TasI AATT 5 cut(s) 234, 272, 298, 525, 909
TatI WGTACW 1 cut(s) 761
TfiI GAWTC 3 cut(s) 194, 388, 1040
Tru1I TTAA 3 cut(s) 123, 209, 819
Tru9I TTAA 3 cut(s) 123, 209, 819
TscAI CASTG 2 cut(s) 341, 792
TseFI GTSAC 2 cut(s) 482, 787
TseI GCWGC 1 cut(s) 357
Tsp45I GTSAC 2 cut(s) 482, 787
TspDTI ATGAA 4 cut(s) 20, 227, 589, 867
TspGWI ACGGA 3 cut(s) 690, 738, 764
TspRI CASTG 2 cut(s) 341, 792
Van91I CCANNNNNTGG 3 cut(s) 108, 611, 879
VpaK11BI GGWCC 2 cut(s) 514, 677
XapI RAATTY 1 cut(s) 298
XbaI TCTAGA 1 cut(s) 59
XceI RCATGY 1 cut(s) 985
XspI CTAG 4 cut(s) 60, 423, 572, 792
ZraI GACGTC 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.