AT3G19890

ABC transporter E family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
6914910 .. 6916142
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19890.1

Sequence Viewer

Length: 1233 bp
ATGACTATGATCTCTGATCTTTCGAAGGATTTGGTAGAGGAGATACTCTCTAAGGCTCCGATAACTTCTCTTGGAGCCGTGAGATCCACTCACAAACAATGGAACGCCTTATCCAAAGGTCGGCTGTTGTATAAAGCGGAAGCGAAGGATCAGTTTCTAGGGTTCATGGTGATGGATCATAGGTTTTTATCAATGATATTCCATCTCAATGGAATTCTAAAAGGAGACGGTGAAGGCTTTGATCGTCCATCTATCAGGGAGGTAGGTGATATAGTTAATCAAATCGACATCTCTAAAGTGTTTCAATGCGATGGTTTAGTGTTGTGCGTTCCAAGTGACAACTCTAGTGTTGTGGTTTGGAATCCGTATTTGGGTCAAACCAAGTGGATCGAAGCAAGAGAACCTCACGACGAATCAGACATGTTTGCTCTCGGTTACGACAAGGACAAGAACCACAAGATCTTGAGGTTGTACGATGAGTGTTATTACTACTACGAAGTTTACAATTTCAAGACAGAATCATGGGGGGAAGAAGATCACCTTCCAGGCTGGGATATAGATTCTTATAACCGCGGCGTATCCTTAAATGGAAATACGTACTTCTTGACTCAAGAGCAAAGAGCAAAAGATAAGTATCGTGTTTTCTTGCTTTGTTTTAACTTCACAACGGAGAAGTTTGAAAATTTTATTGCTATGCCGTTTAAGTATCATAGGAAATACGTTGGAACACTTTCTTGTGTTGGAAATGAAAAACTAGCGGCTCTATATCAGCGCTGGGATACAGGCGAGATGGCCATATGGGTAACCACTAAGATTGAGTCCAATGAGGTGTTGTGGAGCAACTTGTTTAAAGTTGATATGAAACCACTCGTTAGGTTTGGCTTTCAACAATGTAAAGATGAAGCTGGCAGTTTTTTCATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTAATCTAGATAAAAAACGTGGTAAAAGGAATAACAAGACACGTTGTTACCACACAGCTTACATTATTGGAGAGAAGGGATACTTGAAAAAAGAGGTTCTTGGAGAAGCTGTGGAGGTCCGAAAAGACGTGTATCGGAGCGCACTTGTGTGTTCTAGCTCTTATGTTCCAAGTTTAGAGAAGATCAACCAAATTGAAGAGGAAGAGGAAGATAAGTGCAAATCAATCAAAATGGTGGACACAAAAAGGCAACGTAAGAAGAGGAAGAGGAAGAGCAAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran F-box FBA_1 Fer4 RLI

Protein Analysis

410

Amino Acids

47.9

Weight (kDa)

8.61

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 54 - 378 7.7e-98 F-box associated beta propeller domain
FBA_3 PF08268 104 - 280 6.9e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 567
AccII CGCG 2 cut(s) 573, 941
AciI CCGC 5 cut(s) 137, 571, 573, 758, 941
AclWI GGATC 4 cut(s) 78, 156, 183, 395
AcoI YGGCCR 1 cut(s) 792
AcsI RAATTY 2 cut(s) 213, 682
AfaI GTAC 2 cut(s) 473, 599
AfeI AGCGCT 1 cut(s) 773
AfiI CCNNNNNNNGG 2 cut(s) 120, 371
AflIII ACRYGT 3 cut(s) 420, 989, 1077
AgsI TTSAA 6 cut(s) 305, 511, 680, 887, 1036, 1145
AjiI CACGTC 1 cut(s) 1078
AjnI CCWGG 1 cut(s) 544
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AleI CACNNNNGTG 1 cut(s) 1096
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 4 cut(s) 905, 1007, 1058, 1107
AluI AGCT 4 cut(s) 905, 1007, 1058, 1107
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 4 cut(s) 78, 156, 183, 395
Aor51HI AGCGCT 1 cut(s) 773
AoxI GGCC 1 cut(s) 792
ApoI RAATTY 2 cut(s) 213, 682
Asp700I GAANNNNTTC 1 cut(s) 730
AspLEI GCGC 2 cut(s) 774, 1091
AspS9I GGNCC 1 cut(s) 1066
AsuHPI GGTGA 4 cut(s) 181, 242, 278, 530
AsuII TTCGAA 1 cut(s) 23
AvaII GGWCC 1 cut(s) 1066
BalI TGGCCA 1 cut(s) 794
BccI CCATC 5 cut(s) 166, 210, 256, 305, 784
BceAI ACGGC 2 cut(s) 62, 682
BciT130I CCWGG 1 cut(s) 546
BciVI GTATCC 3 cut(s) 589, 772, 1022
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 5 cut(s) 158, 345, 755, 956, 1104
BfoI RGCGCY 1 cut(s) 775
BfuI GTATCC 3 cut(s) 589, 772, 1022
BglII AGATCT 1 cut(s) 459
BisI GCNGC 2 cut(s) 574, 759
BlsI GCNGC 2 cut(s) 575, 760
Bme1390I CCNGG 1 cut(s) 546
Bme18I GGWCC 1 cut(s) 1066
BmgBI CACGTC 1 cut(s) 1078
BmgT120I GGNCC 1 cut(s) 1066
BmiI GGNNCC 2 cut(s) 57, 76
BmrFI CCNGG 1 cut(s) 546
BplI GAGNNNNNCTC 4 cut(s) 32, 64, 73, 105
Bpu14I TTCGAA 1 cut(s) 23
BpuEI CTTGAG 2 cut(s) 484, 594
BsaAI YACGTR 1 cut(s) 597
BsaBI GATNNNNATC 1 cut(s) 633
BsaJI CCNNGG 1 cut(s) 571
BsaXI ACNNNNNCTCC 2 cut(s) 1044, 1074
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 371
Bse8I GATNNNNATC 1 cut(s) 633
BseBI CCWGG 1 cut(s) 546
BseDI CCNNGG 1 cut(s) 571
BseJI GATNNNNATC 1 cut(s) 633
BseLI CCNNNNNNNGG 2 cut(s) 120, 371
BseRI GAGGAG 1 cut(s) 53
BseYI CCCAGC 2 cut(s) 549, 774
Bsh1236I CGCG 2 cut(s) 573, 941
BshFI GGCC 1 cut(s) 794
BslI CCNNNNNNNGG 2 cut(s) 120, 371
BsmAI GTCTC 1 cut(s) 219
BsmBI CGTCTC 1 cut(s) 219
BsnI GGCC 1 cut(s) 794
Bsp119I TTCGAA 1 cut(s) 23
BspACI CCGC 5 cut(s) 137, 571, 573, 758, 941
BspANI GGCC 1 cut(s) 794
BspFNI CGCG 2 cut(s) 573, 941
BspLI GGNNCC 2 cut(s) 57, 76
BspPI GGATC 4 cut(s) 78, 156, 183, 395
BspQI GCTCTTC 1 cut(s) 1214
BspT104I TTCGAA 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 571
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 6 cut(s) 921, 1140, 1146, 1202, 1208, 1214
BstBAI YACGTR 1 cut(s) 597
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 907
BstDEI CTNAG 2 cut(s) 51, 810
BstDSI CCRYGG 1 cut(s) 571
BstEII GGTNACC 1 cut(s) 802
BstFNI CGCG 2 cut(s) 573, 941
BstH2I RGCGCY 1 cut(s) 775
BstHHI GCGC 2 cut(s) 774, 1091
BstMAI GTCTC 1 cut(s) 219
BstNI CCWGG 1 cut(s) 546
BstNSI RCATGY 1 cut(s) 424
BstPI GGTNACC 1 cut(s) 802
BstSCI CCNGG 1 cut(s) 544
BstSNI TACGTA 1 cut(s) 597
BstUI CGCG 2 cut(s) 573, 941
BstX2I RGATCY 2 cut(s) 83, 459
BstXI CCANNNNNNTGG 1 cut(s) 209
BstYI RGATCY 2 cut(s) 83, 459
BsuI GTATCC 3 cut(s) 589, 772, 1022
BsuRI GGCC 1 cut(s) 794
BtgI CCRYGG 1 cut(s) 571
BtgZI GCGATG 1 cut(s) 324
BtrI CACGTC 1 cut(s) 1078
Cac8I GCNNGC 1 cut(s) 907
CfoI GCGC 2 cut(s) 774, 1091
Cfr13I GGNCC 1 cut(s) 1066
Cfr42I CCGCGG 1 cut(s) 574
Csp6I GTAC 2 cut(s) 472, 598
CspCI CAANNNNNGTGG 4 cut(s) 365, 400, 796, 831
CviAII CATG 3 cut(s) 166, 421, 522
CviQI GTAC 2 cut(s) 472, 598
DdeI CTNAG 2 cut(s) 51, 810
DraI TTTAAA 1 cut(s) 850
EaeI YGGCCR 1 cut(s) 792
Eam1104I CTCTTC 6 cut(s) 921, 1140, 1146, 1202, 1208, 1214
EarI CTCTTC 6 cut(s) 921, 1140, 1146, 1202, 1208, 1214
Eco105I TACGTA 1 cut(s) 597
Eco47I GGWCC 1 cut(s) 1066
Eco47III AGCGCT 1 cut(s) 773
Eco91I GGTNACC 1 cut(s) 802
EcoO65I GGTNACC 1 cut(s) 802
EcoRI GAATTC 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 544
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 3 cut(s) 169, 424, 525
FalI AAGNNNNNCTT 6 cut(s) 525, 557, 1016, 1048, 1032, 1064
FatI CATG 3 cut(s) 165, 420, 521
FauNDI CATATG 1 cut(s) 797
Fnu4HI GCNGC 2 cut(s) 574, 759
Fsp4HI GCNGC 2 cut(s) 574, 759
FspBI CTAG 5 cut(s) 158, 345, 755, 956, 1104
GlaI GCGC 2 cut(s) 773, 1090
GluI GCNGC 2 cut(s) 574, 759
GsaI CCCAGC 2 cut(s) 553, 778
HaeII RGCGCY 1 cut(s) 775
HaeIII GGCC 1 cut(s) 794
HhaI GCGC 2 cut(s) 774, 1091
Hin1II CATG 3 cut(s) 169, 424, 525
Hin6I GCGC 2 cut(s) 772, 1089
HinP1I GCGC 2 cut(s) 772, 1089
HinfI GANTC 6 cut(s) 361, 413, 518, 560, 607, 818
HphI GGTGA 4 cut(s) 181, 242, 278, 530
Hpy166II GTNNAC 2 cut(s) 502, 1186
Hpy188I TCNGA 5 cut(s) 16, 60, 418, 1070, 1086
Hpy188III TCNNGA 6 cut(s) 407, 463, 511, 604, 611, 956
Hpy8I GTNNAC 2 cut(s) 502, 1186
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 5 cut(s) 19, 139, 227, 551, 1018
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 6 cut(s) 596, 720, 967, 991, 1077, 1201
HpyCH4V TGCA 1 cut(s) 1167
HpyF3I CTNAG 2 cut(s) 51, 810
HpySE526I ACGT 6 cut(s) 596, 720, 967, 991, 1077, 1201
Hsp92II CATG 3 cut(s) 169, 424, 525
HspAI GCGC 2 cut(s) 772, 1089
KspI CCGCGG 1 cut(s) 574
LguI GCTCTTC 1 cut(s) 1214
LmnI GCTCC 4 cut(s) 61, 74, 837, 1086
LpnPI CCDG 7 cut(s) 241, 531, 535, 558, 760, 768, 891
MaeI CTAG 5 cut(s) 158, 345, 755, 956, 1104
MaeII ACGT 6 cut(s) 596, 720, 967, 991, 1077, 1201
MaeIII GTNAC 4 cut(s) 335, 434, 802, 995
MflI RGATCY 2 cut(s) 83, 459
MlsI TGGCCA 1 cut(s) 794
MluCI AATT 4 cut(s) 213, 505, 682, 1140
MluNI TGGCCA 1 cut(s) 794
MlyI GAGTC 2 cut(s) 601, 827
MmeI TCCRAC 2 cut(s) 703, 721
Mox20I TGGCCA 1 cut(s) 794
MroXI GAANNNNTTC 1 cut(s) 730
MscI TGGCCA 1 cut(s) 794
MseI TTAA 6 cut(s) 276, 584, 657, 702, 849, 951
MslI CAYNNNNRTG 3 cut(s) 170, 207, 1096
Msp20I TGGCCA 1 cut(s) 794
MspA1I CMGCKG 1 cut(s) 573
MspR9I CCNGG 1 cut(s) 546
MvaI CCWGG 1 cut(s) 546
MvnI CGCG 2 cut(s) 573, 941
NdeI CATATG 1 cut(s) 797
NlaIII CATG 3 cut(s) 169, 424, 525
NlaIV GGNNCC 2 cut(s) 57, 76
NmuCI GTSAC 1 cut(s) 335
NspI RCATGY 1 cut(s) 424
NspV TTCGAA 1 cut(s) 23
OliI CACNNNNGTG 1 cut(s) 1096
PciI ACATGT 1 cut(s) 420
PciSI GCTCTTC 1 cut(s) 1214
PdmI GAANNNNTTC 1 cut(s) 730
PfeI GAWTC 4 cut(s) 361, 413, 518, 560
PkrI GCNGC 2 cut(s) 575, 760
PleI GAGTC 2 cut(s) 601, 826
PpsI GAGTC 2 cut(s) 601, 826
Ppu21I YACGTR 1 cut(s) 597
PscI ACATGT 1 cut(s) 420
PsiI TTATAA 1 cut(s) 567
Psp6I CCWGG 1 cut(s) 544
PspEI GGTNACC 1 cut(s) 802
PspFI CCCAGC 2 cut(s) 549, 774
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 2 cut(s) 57, 76
PspPI GGNCC 1 cut(s) 1066
PsuI RGATCY 2 cut(s) 83, 459
RsaI GTAC 2 cut(s) 473, 599
RsaNI GTAC 2 cut(s) 472, 598
RseI CAYNNNNRTG 3 cut(s) 170, 207, 1096
SacII CCGCGG 1 cut(s) 574
SapI GCTCTTC 1 cut(s) 1214
SaqAI TTAA 6 cut(s) 276, 584, 657, 702, 849, 951
SatI GCNGC 2 cut(s) 574, 759
Sau96I GGNCC 1 cut(s) 1066
SchI GAGTC 2 cut(s) 601, 827
ScrFI CCNGG 1 cut(s) 546
Sfr303I CCGCGG 1 cut(s) 574
SfuI TTCGAA 1 cut(s) 23
SgrBI CCGCGG 1 cut(s) 574
SinI GGWCC 1 cut(s) 1066
SmiMI CAYNNNNRTG 3 cut(s) 170, 207, 1096
SmlI CTYRAG 2 cut(s) 463, 609
SmoI CTYRAG 2 cut(s) 463, 609
SnaBI TACGTA 1 cut(s) 597
Sse9I AATT 4 cut(s) 213, 505, 682, 1140
SsiI CCGC 5 cut(s) 137, 571, 573, 758, 941
SspMI CTAG 5 cut(s) 158, 345, 755, 956, 1104
StyD4I CCNGG 1 cut(s) 544
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 6 cut(s) 599, 723, 970, 994, 1080, 1204
TaqI TCGA 3 cut(s) 23, 285, 390
TasI AATT 4 cut(s) 213, 505, 682, 1140
TauI GCSGC 2 cut(s) 576, 761
TfiI GAWTC 4 cut(s) 361, 413, 518, 560
Tru1I TTAA 6 cut(s) 276, 584, 657, 702, 849, 951
Tru9I TTAA 6 cut(s) 276, 584, 657, 702, 849, 951
TseFI GTSAC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 5 cut(s) 154, 762, 875, 907, 915
TspGWI ACGGA 2 cut(s) 354, 683
VpaK11BI GGWCC 1 cut(s) 1066
XapI RAATTY 2 cut(s) 213, 682
XbaI TCTAGA 1 cut(s) 955
XceI RCATGY 1 cut(s) 424
XmnI GAANNNNTTC 1 cut(s) 730
XspI CTAG 5 cut(s) 158, 345, 755, 956, 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.