AT3G25460
ERF Family

termination of mitochondrial transcription

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
9231581 .. 9232666
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G25460.1

Sequence Viewer

Length: 1086 bp
ATGATGATGCCAGAACTTCCAGAGGATTTGTTAGTGGAGATACTCTGCCGCGTTCCGGCTACATCTTTGAAACGATTACGATCTACTTGCAAACTATGGAACCATTTATACAACGATAAGAGATTCAAAAGCAAACACTGCCATAAAGCCCCAAGGCAATCTCTGATTCTCATGTGGAAGAATTTTGGTTTTTCTTCGATTAGCATCAATCTCCAAAGAGTTTCACCTATAGAGGTCACTGGTGAACTTAACCTAATCGACCATCATTCTAGTTTAGGTATGTTCAGGAACTCTCCATTATGTCAAACTTCTGGCTTATTGTTATGCGTCAACGTGGAGAAAATTAATACTAGGCTCGTGGTATGGAACCCGTGTACTGGTAAAACCAAGTGGATTCAACACAGAAGGATGGGCTACATCTGCAACTATGCTCTTGGATCCTACCAAGACAAAAAATCCGACAATAATAGCTACAAAATATTGAGCCACGGGATTTATGGTGGCCAAGAGTTCGAAATTTATGAGATTAACTCAAATTCATGGAGGATTCTTGATGTCACTGTGGACTCCTCTTTGTACATTGAAAACGTTTCTTTGAAGGGTAAGACTTACTGGTTTGCTACAGATGGAAATGATAAACCGTGCGACCTATTCTTGATCTGTTTTGATTATACGACAGAAAGATTTGAACGTCTATGTCTTCCGTATCAGATTCCGTATTTTCGTAATACATCTCTATCAGTTGTTAAAGAAGAGAAACTTTCCGTGTTATTACAACCTTCCCTTACATCGAAGACACAGATATGGGTGACAAATAAGATTGGTGAGGCCAAAGTGTTGTCGTGGATCAAGTTTTTAACGGTGGATTTGAAGCCTGAGATTAAATATGGCATAAAATTCTTGGTCGATGAGGAGAACAAAGTCCTTGTGTATGAGCAAAATTTTGTAATAAACGGCAAAAACAACATGATATACGTCGTTGGAGAGGACAACGAAGTTAGGGAAGTGGTGTTTAGAGTCGGATTAAAACCATTATTCTTTTATTATGTTCCAAGTTTGACTCAAATCCGGCAAGGTAATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006355 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006914 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016236 GO:0019219 GO:0019222 GO:0019538 GO:0019843 GO:0019867 GO:0022607 GO:0022613 GO:0022618 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031966 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032270 GO:0032502 GO:0032543 GO:0034248 GO:0034250 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045892 GO:0045934 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0060255 GO:0061668 GO:0061919 GO:0065003 GO:0065007 GO:0070013 GO:0070129 GO:0070131 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903108 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

361

Amino Acids

41.99

Weight (kDa)

8.84

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 4 - 42 5.1e-07 F-box-like
F-box PF00646 5 - 43 6e-08 F-box domain
FBA_1 PF07734 56 - 356 2.9e-80 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 51
AciI CCGC 1 cut(s) 49
AclI AACGTT 1 cut(s) 588
AclWI GGATC 3 cut(s) 432, 445, 854
AcoI YGGCCR 1 cut(s) 502
AcsI RAATTY 5 cut(s) 181, 516, 535, 896, 940
AfaI GTAC 2 cut(s) 376, 578
AfiI CCNNNNNNNGG 2 cut(s) 55, 377
AgsI TTSAA 7 cut(s) 70, 127, 398, 584, 598, 689, 871
AluBI AGCT 1 cut(s) 471
AluI AGCT 1 cut(s) 471
AlwI GGATC 3 cut(s) 432, 445, 854
AoxI GGCC 2 cut(s) 502, 828
ApoI RAATTY 5 cut(s) 181, 516, 535, 896, 940
AseI ATTAAT 1 cut(s) 345
AsuHPI GGTGA 4 cut(s) 216, 254, 820, 836
AsuII TTCGAA 1 cut(s) 513
BalI TGGCCA 1 cut(s) 504
BamHI GGATCC 1 cut(s) 437
BauI CACGAG 1 cut(s) 356
BbsI GAAGAC 2 cut(s) 692, 800
BccI CCATC 3 cut(s) 270, 403, 620
BceAI ACGGC 1 cut(s) 970
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BfaI CTAG 2 cut(s) 270, 351
BfmI CTRYAG 2 cut(s) 228, 621
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
BmiI GGNNCC 3 cut(s) 101, 368, 439
BmsI GCATC 1 cut(s) 213
BpiI GAAGAC 2 cut(s) 692, 800
BplI GAGNNNNNCTC 2 cut(s) 515, 547
Bpu14I TTCGAA 1 cut(s) 513
BsaBI GATNNNNATC 2 cut(s) 79, 203
BsaJI CCNNGG 2 cut(s) 152, 487
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 377
Bse1I ACTGG 3 cut(s) 244, 382, 617
Bse8I GATNNNNATC 2 cut(s) 79, 203
BseDI CCNNGG 2 cut(s) 152, 487
BseGI GGATG 1 cut(s) 414
BseJI GATNNNNATC 2 cut(s) 79, 203
BseLI CCNNNNNNNGG 2 cut(s) 55, 377
BseMII CTCAG 1 cut(s) 867
BseNI ACTGG 3 cut(s) 244, 382, 617
BseRI GAGGAG 2 cut(s) 559, 926
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 2 cut(s) 504, 830
BsiSI CCGG 2 cut(s) 56, 1069
BslI CCNNNNNNNGG 2 cut(s) 55, 377
BsnI GGCC 2 cut(s) 504, 830
Bsp119I TTCGAA 1 cut(s) 513
Bsp1407I TGTACA 1 cut(s) 576
Bsp143I GATC 4 cut(s) 80, 437, 657, 846
BspACI CCGC 1 cut(s) 49
BspANI GGCC 2 cut(s) 504, 830
BspCNI CTCAG 1 cut(s) 868
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 3 cut(s) 101, 368, 439
BspPI GGATC 3 cut(s) 432, 445, 854
BspT104I TTCGAA 1 cut(s) 513
BsrGI TGTACA 1 cut(s) 576
BsrI ACTGG 3 cut(s) 244, 382, 617
BssECI CCNNGG 2 cut(s) 152, 487
BssMI GATC 4 cut(s) 80, 437, 657, 846
BssSI CACGAG 1 cut(s) 356
BssT1I CCWWGG 1 cut(s) 152
Bst2BI CACGAG 1 cut(s) 356
Bst4CI ACNGT 3 cut(s) 562, 642, 862
Bst6I CTCTTC 1 cut(s) 747
BstAPI GCANNNNNTGC 1 cut(s) 138
BstAUI TGTACA 1 cut(s) 576
BstBI TTCGAA 1 cut(s) 513
BstDEI CTNAG 1 cut(s) 876
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 1 cut(s) 414
BstFNI CGCG 1 cut(s) 51
BstKTI GATC 4 cut(s) 83, 440, 660, 849
BstMBI GATC 4 cut(s) 80, 437, 657, 846
BstMWI GCNNNNNNNGC 2 cut(s) 138, 420
BstSFI CTRYAG 2 cut(s) 228, 621
BstUI CGCG 1 cut(s) 51
BstV2I GAAGAC 2 cut(s) 692, 800
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
BsuRI GGCC 2 cut(s) 504, 830
BtgI CCRYGG 1 cut(s) 487
BtsCI GGATG 1 cut(s) 414
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 3 cut(s) 136, 237, 558
CseI GACGC 1 cut(s) 316
Csp6I GTAC 2 cut(s) 375, 577
CviAII CATG 3 cut(s) 172, 540, 967
CviQI GTAC 2 cut(s) 375, 577
DdeI CTNAG 1 cut(s) 876
DpnI GATC 4 cut(s) 82, 439, 659, 848
DpnII GATC 4 cut(s) 80, 437, 657, 846
EaeI YGGCCR 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 747
Eco130I CCWWGG 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 3 cut(s) 175, 543, 970
FalI AAGNNNNNCTT 2 cut(s) 744, 776
FatI CATG 3 cut(s) 171, 539, 966
Fnu4HI GCNGC 1 cut(s) 49
FokI GGATG 1 cut(s) 421
Fsp4HI GCNGC 1 cut(s) 49
FspBI CTAG 2 cut(s) 270, 351
GluI GCNGC 1 cut(s) 49
HaeIII GGCC 2 cut(s) 504, 830
HapII CCGG 2 cut(s) 56, 1069
HgaI GACGC 1 cut(s) 316
Hin1II CATG 3 cut(s) 175, 543, 970
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HinfI GANTC 8 cut(s) 123, 166, 394, 547, 566, 712, 1017, 1060
HpaII CCGG 2 cut(s) 56, 1069
HphI GGTGA 4 cut(s) 216, 254, 820, 836
Hpy166II GTNNAC 4 cut(s) 245, 331, 375, 565
Hpy188I TCNGA 4 cut(s) 165, 460, 711, 1022
Hpy188III TCNNGA 4 cut(s) 20, 286, 551, 655
Hpy8I GTNNAC 4 cut(s) 245, 331, 375, 565
Hpy99I CGWCG 1 cut(s) 980
HpyAV CCTTC 3 cut(s) 399, 592, 789
HpyCH4III ACNGT 3 cut(s) 562, 642, 862
HpyCH4IV ACGT 4 cut(s) 333, 588, 691, 975
HpyCH4V TGCA 2 cut(s) 90, 423
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 420
HpyF3I CTNAG 1 cut(s) 876
HpySE526I ACGT 4 cut(s) 333, 588, 691, 975
Hsp92II CATG 3 cut(s) 175, 543, 970
Kzo9I GATC 4 cut(s) 80, 437, 657, 846
LweI GCATC 1 cut(s) 213
MaeI CTAG 2 cut(s) 270, 351
MaeII ACGT 4 cut(s) 333, 588, 691, 975
MaeIII GTNAC 3 cut(s) 235, 556, 808
MalI GATC 4 cut(s) 82, 439, 659, 848
MboI GATC 4 cut(s) 80, 437, 657, 846
MboII GAAGA 5 cut(s) 186, 190, 692, 764, 805
MflI RGATCY 1 cut(s) 437
MlsI TGGCCA 1 cut(s) 504
MluCI AATT 6 cut(s) 181, 342, 516, 535, 896, 940
MluNI TGGCCA 1 cut(s) 504
MlyI GAGTC 3 cut(s) 560, 1026, 1054
MmeI TCCRAC 3 cut(s) 483, 961, 1000
MnlI CCTC 7 cut(s) 16, 226, 537, 580, 820, 904, 979
Mox20I TGGCCA 1 cut(s) 504
MscI TGGCCA 1 cut(s) 504
MseI TTAA 8 cut(s) 249, 345, 528, 747, 857, 882, 1025, 1084
MslI CAYNNNNRTG 1 cut(s) 802
Msp20I TGGCCA 1 cut(s) 504
MspI CCGG 2 cut(s) 56, 1069
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 2 cut(s) 138, 420
NdeII GATC 4 cut(s) 80, 437, 657, 846
NlaIII CATG 3 cut(s) 175, 543, 970
NlaIV GGNNCC 3 cut(s) 101, 368, 439
NmuCI GTSAC 3 cut(s) 235, 556, 808
NspV TTCGAA 1 cut(s) 513
PfeI GAWTC 5 cut(s) 123, 166, 394, 547, 712
PkrI GCNGC 1 cut(s) 50
PleI GAGTC 3 cut(s) 560, 1025, 1054
PpsI GAGTC 3 cut(s) 560, 1025, 1054
PshBI ATTAAT 1 cut(s) 345
Psp1406I AACGTT 1 cut(s) 588
PspN4I GGNNCC 3 cut(s) 101, 368, 439
PsrI GAACNNNNNNTAC 2 cut(s) 92, 124
PsuI RGATCY 1 cut(s) 437
RsaI GTAC 2 cut(s) 376, 578
RsaNI GTAC 2 cut(s) 375, 577
RseI CAYNNNNRTG 1 cut(s) 802
SaqAI TTAA 8 cut(s) 249, 345, 528, 747, 857, 882, 1025, 1084
SatI GCNGC 1 cut(s) 49
Sau3AI GATC 4 cut(s) 80, 437, 657, 846
SchI GAGTC 3 cut(s) 560, 1026, 1054
SfaNI GCATC 1 cut(s) 213
SfcI CTRYAG 2 cut(s) 228, 621
SfuI TTCGAA 1 cut(s) 513
SmiMI CAYNNNNRTG 1 cut(s) 802
Sse9I AATT 6 cut(s) 181, 342, 516, 535, 896, 940
SsiI CCGC 1 cut(s) 49
SspI AATATT 1 cut(s) 480
SspMI CTAG 2 cut(s) 270, 351
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 3 cut(s) 562, 642, 862
TaiI ACGT 4 cut(s) 336, 591, 694, 978
TaqI TCGA 5 cut(s) 197, 258, 513, 791, 906
TasI AATT 6 cut(s) 181, 342, 516, 535, 896, 940
TatI WGTACW 2 cut(s) 374, 576
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 5 cut(s) 123, 166, 394, 547, 712
Tru1I TTAA 8 cut(s) 249, 345, 528, 747, 857, 882, 1025, 1084
Tru9I TTAA 8 cut(s) 249, 345, 528, 747, 857, 882, 1025, 1084
TscAI CASTG 3 cut(s) 143, 244, 565
TseFI GTSAC 3 cut(s) 235, 556, 808
Tsp45I GTSAC 3 cut(s) 235, 556, 808
TspDTI ATGAA 1 cut(s) 528
TspGWI ACGGA 3 cut(s) 693, 705, 754
TspRI CASTG 3 cut(s) 143, 244, 565
VspI ATTAAT 1 cut(s) 345
XapI RAATTY 5 cut(s) 181, 516, 535, 896, 940
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XspI CTAG 2 cut(s) 270, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.