AT1G67450

ABC transporter E family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Forward (+)
25266163 .. 25267359
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67450.1

Sequence Viewer

Length: 1197 bp
ATGACGATGATGATGTCTGATCTTCCGAATGATTTGGTAGAAGAGATTTTGTCTAGGGTTCCGATAACATCTCTAGGAGCAGTGAGATCTACTTGCAAACGATGGAACGGTTTATCCAAAGATCGTATTGTATGTAAAGGAGATGCAAATCAACAGTTTACAGGGTTCACGAGATATGTGAACGAATCTACGGTTTGTTCAATGAGACTTGATCTTAATGAAATCCAAAATGAAGACGTTGAACTAGTTGAGCTCTCTATAAATAAGATAAATAAATTTATTGAACTTGAGTTATTTCAAGTTTATTACAGCGATGGCTTGTTGTTATTGGTAACTGATGAGGTAGATTCCAAGATCGTGGTTTGGAATCCGTATTTGGGACAAACCAGGTTGATCCAATGCAGAGATACTGAGCATTTCAAATATAGGTATGCTCTCGGATACGACAACAACCGTAACCACAAAATCTTGATGTATAATAGGAAAAATTGTGAAATCTACGATTTTAAATCTGATTCATGGAAGGTTCTTGATATCATTCCCGACTTGCATACAAATATTTATGTACGTGACATGTCAATAAAGGGAAATACTTATTTTTTCTATCGAGGTGAGAAAATAGGGGAAGGACTAGCTGGTTGCTTACTTTCTTTTGATTTTACAAGAGAGAGATTTGTGTCGTGTCTTCCTCTCCCATTTCAAATTGCTAAGTTTGATGATAATGTAGCTCTATCTTCTGTTAGAGAGGAACATCTTGTGGTGTTATTTAATAATTGGGAAGAATCTGAGATGGAGATATGGGTGACAACTAAGATTGAACCCAATGCTGTGTCATGGAGCAACTTCTTAACATTTACTCATTTTAGAATTAAGTTTTTAGTTACGAGTTTCTTCATTGACCAAGAGAAGAAATTAGCCGTAGTGTTTGGTAGAAGCTTATCTAAACAAATGAGGTGCAACATAGCTTACGTCATTGGAGATAATGGATACTTGAGAATATTGGATTTCGGAGTAACTTTCATACCATCTAACCTACCAGTCTCTTATGCTCCTAGTTTAGTGAAAATCACCCAAGGCCAAGAACTCTCGGTTATCGAGGAAAAGAAAAGATCGAGATTATTAGCCAGTCTTGTTTACAGTACGTTATTTGTTTCTTTCATCATCTTCTTCTCGTTCATTTCTTCTGTTTTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran F-box FBA_1 Fer4 RLI

Protein Analysis

398

Amino Acids

46.24

Weight (kDa)

5.87

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 43 2.2e-09 F-box domain
F-box-like PF12937 5 - 42 3.1e-07 F-box-like
FBA_1 PF07734 60 - 356 1.1e-91 F-box associated beta propeller domain
FBA_3 PF08268 99 - 281 4.9e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 388
AcsI RAATTY 1 cut(s) 275
AfaI GTAC 2 cut(s) 567, 1141
AfiI CCNNNNNNNGG 1 cut(s) 377
AflIII ACRYGT 1 cut(s) 573
AgsI TTSAA 7 cut(s) 201, 242, 284, 299, 421, 701, 818
AhlI ACTAGT 1 cut(s) 244
AjnI CCWGG 1 cut(s) 386
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AloI GAACNNNNNNTCC 2 cut(s) 98, 130
AluBI AGCT 5 cut(s) 253, 635, 728, 936, 965
AluI AGCT 5 cut(s) 253, 635, 728, 936, 965
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 2 cut(s) 199, 1045
AlwI GGATC 1 cut(s) 388
AoxI GGCC 1 cut(s) 1075
ApoI RAATTY 1 cut(s) 275
AsuHPI GGTGA 3 cut(s) 623, 814, 1060
BanII GRGCYC 1 cut(s) 255
BauI CACGAG 1 cut(s) 169
BbsI GAAGAC 2 cut(s) 240, 677
Bbv12I GWGCWC 1 cut(s) 255
BccI CCATC 4 cut(s) 96, 308, 784, 1033
BceAI ACGGC 1 cut(s) 902
BciT130I CCWGG 1 cut(s) 388
BciVI GTATCC 2 cut(s) 434, 980
BcoDI GTCTC 2 cut(s) 199, 1045
BcuI ACTAGT 1 cut(s) 244
BfaI CTAG 5 cut(s) 54, 74, 245, 632, 1053
BfuI GTATCC 2 cut(s) 434, 980
BglII AGATCT 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 388
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 133
BpiI GAAGAC 2 cut(s) 240, 677
BpuEI CTTGAG 2 cut(s) 308, 1012
BsaAI YACGTR 1 cut(s) 569
BsaBI GATNNNNATC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 1072
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse1I ACTGG 2 cut(s) 1037, 1125
Bse8I GATNNNNATC 1 cut(s) 147
BseBI CCWGG 1 cut(s) 388
BseDI CCNNGG 1 cut(s) 1072
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMII CTCAG 2 cut(s) 402, 777
BseNI ACTGG 2 cut(s) 1037, 1125
BshFI GGCC 1 cut(s) 1077
BsiHKAI GWGCWC 1 cut(s) 255
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 2 cut(s) 199, 1045
BsmFI GGGAC 1 cut(s) 393
BsnI GGCC 1 cut(s) 1077
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 7 cut(s) 19, 86, 121, 211, 354, 393, 1109
BspANI GGCC 1 cut(s) 1077
BspCNI CTCAG 2 cut(s) 403, 778
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 1 cut(s) 388
BsrI ACTGG 2 cut(s) 1037, 1125
BssECI CCNNGG 1 cut(s) 1072
BssMI GATC 7 cut(s) 19, 86, 121, 211, 354, 393, 1109
BssSI CACGAG 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 1072
Bst2BI CACGAG 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 388
Bst4CI ACNGT 5 cut(s) 110, 156, 193, 455, 1139
Bst6I CTCTTC 1 cut(s) 36
BstBAI YACGTR 1 cut(s) 569
BstDEI CTNAG 4 cut(s) 411, 708, 786, 810
BstKTI GATC 7 cut(s) 22, 89, 124, 214, 357, 396, 1112
BstMAI GTCTC 2 cut(s) 199, 1045
BstMBI GATC 7 cut(s) 19, 86, 121, 211, 354, 393, 1109
BstNI CCWGG 1 cut(s) 388
BstNSI RCATGY 1 cut(s) 577
BstSCI CCNGG 1 cut(s) 386
BstV2I GAAGAC 2 cut(s) 240, 677
BstX2I RGATCY 1 cut(s) 86
BstXI CCANNNNNNTGG 1 cut(s) 358
BstYI RGATCY 1 cut(s) 86
BsuI GTATCC 2 cut(s) 434, 980
BsuRI GGCC 1 cut(s) 1077
BtgZI GCGATG 1 cut(s) 327
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 87
CsiI ACCWGGT 1 cut(s) 386
Csp6I GTAC 2 cut(s) 566, 1140
CviAII CATG 3 cut(s) 519, 574, 834
CviJI RGCY 9 cut(s) 253, 318, 635, 728, 917, 936, 965, 1077, 1124
CviKI_1 RGCY 9 cut(s) 253, 318, 635, 728, 917, 936, 965, 1077, 1124
CviQI GTAC 2 cut(s) 566, 1140
DdeI CTNAG 4 cut(s) 411, 708, 786, 810
DpnI GATC 7 cut(s) 21, 88, 123, 213, 356, 395, 1111
DpnII GATC 7 cut(s) 19, 86, 121, 211, 354, 393, 1109
DraI TTTAAA 1 cut(s) 508
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 1072
Eco24I GRGCYC 1 cut(s) 255
Eco32I GATATC 1 cut(s) 535
Eco53kI GAGCTC 1 cut(s) 253
EcoICRI GAGCTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 386
EcoRV GATATC 1 cut(s) 535
EcoT14I CCWWGG 1 cut(s) 1072
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 1072
FaeI CATG 3 cut(s) 522, 577, 837
FaqI GGGAC 1 cut(s) 393
FatI CATG 3 cut(s) 518, 573, 833
FriOI GRGCYC 1 cut(s) 255
FspBI CTAG 5 cut(s) 54, 74, 245, 632, 1053
HaeIII GGCC 1 cut(s) 1077
Hin1II CATG 3 cut(s) 522, 577, 837
HindIII AAGCTT 1 cut(s) 934
HinfI GANTC 5 cut(s) 185, 347, 367, 515, 782
HphI GGTGA 3 cut(s) 623, 814, 1060
Hpy166II GTNNAC 4 cut(s) 159, 168, 181, 1135
Hpy188I TCNGA 7 cut(s) 19, 27, 63, 440, 514, 787, 1010
Hpy188III TCNNGA 5 cut(s) 169, 469, 530, 542, 1113
Hpy8I GTNNAC 4 cut(s) 159, 168, 181, 1135
HpyAV CCTTC 2 cut(s) 517, 620
HpyCH4III ACNGT 5 cut(s) 110, 156, 193, 455, 1139
HpyCH4IV ACGT 4 cut(s) 237, 568, 969, 1142
HpyCH4V TGCA 5 cut(s) 96, 146, 402, 550, 957
HpyF3I CTNAG 4 cut(s) 411, 708, 786, 810
HpySE526I ACGT 4 cut(s) 237, 568, 969, 1142
Hsp92II CATG 3 cut(s) 522, 577, 837
Kzo9I GATC 7 cut(s) 19, 86, 121, 211, 354, 393, 1109
LmnI GCTCC 3 cut(s) 77, 837, 1054
LpnPI CCDG 6 cut(s) 147, 373, 400, 621, 1050, 1138
LweI GCATC 1 cut(s) 133
MabI ACCWGGT 1 cut(s) 386
MaeI CTAG 5 cut(s) 54, 74, 245, 632, 1053
MaeII ACGT 4 cut(s) 237, 568, 969, 1142
MaeIII GTNAC 6 cut(s) 331, 455, 569, 802, 880, 1012
MalI GATC 7 cut(s) 21, 88, 123, 213, 356, 395, 1111
MboI GATC 7 cut(s) 19, 86, 121, 211, 354, 393, 1109
MflI RGATCY 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 6 cut(s) 275, 487, 702, 772, 867, 911
MnlI CCTC 6 cut(s) 334, 602, 699, 739, 945, 1090
MseI TTAA 5 cut(s) 216, 507, 768, 848, 870
MspR9I CCNGG 1 cut(s) 388
MvaI CCWGG 1 cut(s) 388
NdeII GATC 7 cut(s) 19, 86, 121, 211, 354, 393, 1109
NlaIII CATG 3 cut(s) 522, 577, 837
NlaIV GGNNCC 1 cut(s) 60
NmuCI GTSAC 2 cut(s) 569, 802
NspI RCATGY 1 cut(s) 577
PciI ACATGT 1 cut(s) 573
PfeI GAWTC 5 cut(s) 185, 347, 367, 515, 782
Ppu21I YACGTR 1 cut(s) 569
PscI ACATGT 1 cut(s) 573
Psp124BI GAGCTC 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 386
PspGI CCWGG 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 60
PsuI RGATCY 1 cut(s) 86
RsaI GTAC 2 cut(s) 567, 1141
RsaNI GTAC 2 cut(s) 566, 1140
SacI GAGCTC 1 cut(s) 255
SaqAI TTAA 5 cut(s) 216, 507, 768, 848, 870
Sau3AI GATC 7 cut(s) 19, 86, 121, 211, 354, 393, 1109
ScrFI CCNGG 1 cut(s) 388
SduI GDGCHC 1 cut(s) 255
SexAI ACCWGGT 1 cut(s) 386
SfaNI GCATC 1 cut(s) 133
SmlI CTYRAG 2 cut(s) 287, 991
SmoI CTYRAG 2 cut(s) 287, 991
SpeI ACTAGT 1 cut(s) 244
Sse9I AATT 6 cut(s) 275, 487, 702, 772, 867, 911
SspI AATATT 2 cut(s) 559, 999
SspMI CTAG 5 cut(s) 54, 74, 245, 632, 1053
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 386
StyI CCWWGG 1 cut(s) 1072
TaaI ACNGT 5 cut(s) 110, 156, 193, 455, 1139
TaiI ACGT 4 cut(s) 240, 571, 972, 1145
TaqI TCGA 3 cut(s) 607, 1095, 1112
TasI AATT 6 cut(s) 275, 487, 702, 772, 867, 911
TfiI GAWTC 5 cut(s) 185, 347, 367, 515, 782
Tru1I TTAA 5 cut(s) 216, 507, 768, 848, 870
Tru9I TTAA 5 cut(s) 216, 507, 768, 848, 870
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 2 cut(s) 569, 802
Tsp45I GTSAC 2 cut(s) 569, 802
TspDTI ATGAA 8 cut(s) 234, 246, 507, 883, 1009, 1147, 1165, 1180
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 1 cut(s) 87
XapI RAATTY 1 cut(s) 275
XceI RCATGY 1 cut(s) 577
XspI CTAG 5 cut(s) 54, 74, 245, 632, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.