AT3G17620

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
6026446 .. 6027694
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17620.1

Sequence Viewer

Length: 1197 bp
ATGATGTCCGATCTTCCAAGAGATTTGTTGGAGGAGAGACTCTCTAGGGTTCCGGTGAAATCATTGAGAGAAGCGCGATTTACCTGCAAAAATTGGAAAACATTATCCAAAAAGCGGAGCTTTACAAAGAAGCACCTTGCTCAGGAAGCAACATCAAGGGAAAGTGAGTTTAAGGTTGTCATGGTCTTGCATTGTAAGGTTTATCTAACGAGCATCAACCTCCGTGGAATTCACAACGGCTTTGACCCGTCTATAAACCGTCAAGCTAAACTTGTTAGCCTAAACGGTACAGATCAGATCGATATATCTGAAGTATATCACTGCGACGGTTTACTGTTATGTATCTCGAAAGACTACACTAGGGTCGTGGTTTGGAATCCGTATAGGAGCCAAACTTTGTGGCTCAAACCCAGTAGTCCTGACCATAGAATGGACTGGTATATCTGTGCTATAGGATACGAGAAGCGTAAATCAAGCCTACGCTACAAAGTTTTGCGATTCGTTGATTTTGCCGAAGAAGAATTTGTTGAGTACGAAATATACGAGTTAAAGTCTAATTCATGGAGGGTTCTCGATGTCACTTCCGACTGGGAAGTAGAGTTTTATGCACGAGGTGTCTCTCTCAAGGGAAATACTTATTGGTTTGCTACAGACAAGTTTCCAGAAATCAGCAGTAATCTTATACATAGTGTTTATTTCTTGCTCTGTTTTAATTTTACATCGGAGAGATTTGGGCCGCGTCTTCATTTGCCGTGTTACCCTATGGATGTAGATACTGTGAGTCTTTCTAGTGTTAGAGAAGAGCAACTTGCTGTGTTATTTCAGCGTAAGGACAACTTACATATGGAGATTTGGGTTACGACTAAGATTGAACCTGAAGAGGTGATGTGGAGCAAGTTGTTCTTAGCAGTGGATATGCAACCACTCACTGATTTTAAGTTTGGAATTGCAGATGCGAGTTTCATCATTGACGAAGAGAAGAAAGTTGTTGTAGTCTTTGCTAAAGACAAAGATGTAATGTATCCCACTCACAACACAGCTTACATCATTGGAGAGGATGGATATTACAAAGAAGTGGATCTCGGAAAAACTACTGATAAAATTCGAGATCCACTTGTGTGCTCGTATGTTCCAAGCTCAGCGCAAATCAAGCAAGGAGGCAAAAGGAAGAAAAAAGGGAAATTGATTACTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

398

Amino Acids

46.45

Weight (kDa)

8.24

Isoelectric Point (pI)

32.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 43 3.6e-07 F-box domain
FBA_1 PF07734 59 - 383 1.3e-110 F-box associated beta propeller domain
FBA_3 PF08268 105 - 306 1.7e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 92
AccB7I CCANNNNNTGG 1 cut(s) 430
AccII CGCG 2 cut(s) 76, 739
AciI CCGC 2 cut(s) 115, 737
AclWI GGATC 2 cut(s) 1086, 1103
AcsI RAATTY 3 cut(s) 228, 521, 1101
AcuI CTGAAG 2 cut(s) 330, 897
AdeI CACNNNGTG 1 cut(s) 614
AfaI GTAC 2 cut(s) 289, 533
AfiI CCNNNNNNNGG 3 cut(s) 114, 142, 430
AgsI TTSAA 1 cut(s) 872
AjuI GAANNNNNNNTTGG 2 cut(s) 622, 654
AleI CACNNNNGTG 1 cut(s) 1117
AluBI AGCT 4 cut(s) 120, 266, 1040, 1137
AluI AGCT 4 cut(s) 120, 266, 1040, 1137
Alw21I GWGCWC 1 cut(s) 1124
Alw26I GTCTC 2 cut(s) 31, 622
AlwI GGATC 2 cut(s) 1086, 1103
AoxI GGCC 1 cut(s) 734
ApoI RAATTY 3 cut(s) 228, 521, 1101
AspLEI GCGC 2 cut(s) 76, 1144
AspS9I GGNCC 1 cut(s) 734
AsuHPI GGTGA 2 cut(s) 67, 895
BauI CACGAG 1 cut(s) 609
BbsI GAAGAC 1 cut(s) 734
Bbv12I GWGCWC 1 cut(s) 1124
BccI CCATC 1 cut(s) 1052
BceAI ACGGC 2 cut(s) 253, 736
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BciVI GTATCC 2 cut(s) 449, 1032
BcoDI GTCTC 2 cut(s) 31, 622
BfaI CTAG 3 cut(s) 45, 360, 789
BfmI CTRYAG 2 cut(s) 450, 648
BfuAI ACCTGC 1 cut(s) 92
BfuI GTATCC 2 cut(s) 449, 1032
BisI GCNGC 1 cut(s) 737
BlpI GCTNAGC 1 cut(s) 1138
BlsI GCNGC 1 cut(s) 738
BmgT120I GGNCC 1 cut(s) 734
BmiI GGNNCC 2 cut(s) 51, 389
BmrI ACTGGG 2 cut(s) 405, 598
BmsI GCATC 2 cut(s) 222, 943
BmuI ACTGGG 2 cut(s) 405, 598
BpiI GAAGAC 1 cut(s) 734
BplI GAGNNNNNCTC 2 cut(s) 26, 58
Bpu10I CCTNAGC 1 cut(s) 141
Bpu1102I GCTNAGC 1 cut(s) 1138
BpuEI CTTGAG 1 cut(s) 608
Bsa29I ATCGAT 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 223
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 142, 430
Bse1I ACTGG 3 cut(s) 411, 440, 593
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 2 cut(s) 772, 1063
BseLI CCNNNNNNNGG 3 cut(s) 114, 142, 430
BseMII CTCAG 2 cut(s) 155, 1152
BseNI ACTGG 3 cut(s) 411, 440, 593
BseRI GAGGAG 1 cut(s) 47
Bsh1236I CGCG 2 cut(s) 76, 739
BshFI GGCC 1 cut(s) 736
BshVI ATCGAT 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 1124
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 3 cut(s) 114, 142, 430
BsmAI GTCTC 2 cut(s) 31, 622
BsnI GGCC 1 cut(s) 736
Bsp1286I GDGCHC 1 cut(s) 1124
Bsp143I GATC 5 cut(s) 10, 292, 297, 1078, 1108
Bsp1720I GCTNAGC 1 cut(s) 1138
BspACI CCGC 2 cut(s) 115, 737
BspANI GGCC 1 cut(s) 736
BspCNI CTCAG 2 cut(s) 154, 1151
BspDI ATCGAT 1 cut(s) 300
BspFNI CGCG 2 cut(s) 76, 739
BspLI GGNNCC 2 cut(s) 51, 389
BspMI ACCTGC 1 cut(s) 92
BspPI GGATC 2 cut(s) 1086, 1103
BspQI GCTCTTC 1 cut(s) 795
BsrI ACTGG 3 cut(s) 411, 440, 593
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 5 cut(s) 10, 292, 297, 1078, 1108
BssSI CACGAG 1 cut(s) 609
Bst2BI CACGAG 1 cut(s) 609
Bst4CI ACNGT 5 cut(s) 260, 287, 329, 336, 778
Bst6I CTCTTC 3 cut(s) 795, 873, 969
BstDEI CTNAG 4 cut(s) 141, 864, 904, 1138
BstDSI CCRYGG 1 cut(s) 223
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 2 cut(s) 772, 1063
BstFNI CGCG 2 cut(s) 76, 739
BstHHI GCGC 2 cut(s) 76, 1144
BstKTI GATC 5 cut(s) 13, 295, 300, 1081, 1111
BstMAI GTCTC 2 cut(s) 31, 622
BstMBI GATC 5 cut(s) 10, 292, 297, 1078, 1108
BstMWI GCNNNNNNNGC 2 cut(s) 146, 1150
BstSFI CTRYAG 2 cut(s) 450, 648
BstUI CGCG 2 cut(s) 76, 739
BstV2I GAAGAC 1 cut(s) 734
BstX2I RGATCY 2 cut(s) 1078, 1108
BstYI RGATCY 2 cut(s) 1078, 1108
Bsu15I ATCGAT 1 cut(s) 300
BsuI GTATCC 2 cut(s) 449, 1032
BsuRI GGCC 1 cut(s) 736
BsuTUI ATCGAT 1 cut(s) 300
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 2 cut(s) 772, 1063
BtsI GCAGTG 2 cut(s) 319, 915
BtsIMutI CAGTG 3 cut(s) 319, 915, 927
BveI ACCTGC 1 cut(s) 92
CfoI GCGC 2 cut(s) 76, 1144
Cfr13I GGNCC 1 cut(s) 734
ClaI ATCGAT 1 cut(s) 300
CseI GACGC 1 cut(s) 728
Csp6I GTAC 2 cut(s) 288, 532
CspCI CAANNNNNGTGG 4 cut(s) 205, 240, 380, 415
CviAII CATG 2 cut(s) 181, 561
CviQI GTAC 2 cut(s) 288, 532
DdeI CTNAG 4 cut(s) 141, 864, 904, 1138
DpnI GATC 5 cut(s) 12, 294, 299, 1080, 1110
DpnII GATC 5 cut(s) 10, 292, 297, 1078, 1108
DraIII CACNNNGTG 1 cut(s) 614
Eam1104I CTCTTC 3 cut(s) 795, 873, 969
EarI CTCTTC 3 cut(s) 795, 873, 969
Eco57I CTGAAG 2 cut(s) 330, 897
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 228
FaeI CATG 2 cut(s) 184, 564
FatI CATG 2 cut(s) 180, 560
FauNDI CATATG 1 cut(s) 843
Fnu4HI GCNGC 1 cut(s) 737
FokI GGATG 2 cut(s) 779, 1070
Fsp4HI GCNGC 1 cut(s) 737
FspBI CTAG 3 cut(s) 45, 360, 789
GlaI GCGC 2 cut(s) 75, 1143
GluI GCNGC 1 cut(s) 737
HaeIII GGCC 1 cut(s) 736
HapII CCGG 1 cut(s) 53
HgaI GACGC 1 cut(s) 728
HhaI GCGC 2 cut(s) 76, 1144
Hin1II CATG 2 cut(s) 184, 564
Hin6I GCGC 2 cut(s) 74, 1142
HinP1I GCGC 2 cut(s) 74, 1142
HinfI GANTC 4 cut(s) 39, 376, 498, 781
HpaII CCGG 1 cut(s) 53
HphI GGTGA 2 cut(s) 67, 895
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 6 cut(s) 10, 297, 310, 586, 724, 1085
Hpy188III TCNNGA 6 cut(s) 143, 346, 419, 572, 662, 1106
Hpy8I GTNNAC 1 cut(s) 332
Hpy99I CGWCG 1 cut(s) 329
HpyCH4III ACNGT 5 cut(s) 260, 287, 329, 336, 778
HpyCH4V TGCA 5 cut(s) 87, 190, 608, 919, 950
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 1150
HpyF3I CTNAG 4 cut(s) 141, 864, 904, 1138
Hsp92II CATG 2 cut(s) 184, 564
HspAI GCGC 2 cut(s) 74, 1142
Kzo9I GATC 5 cut(s) 10, 292, 297, 1078, 1108
LguI GCTCTTC 1 cut(s) 795
LmnI GCTCC 3 cut(s) 117, 387, 891
LpnPI CCDG 9 cut(s) 66, 97, 128, 421, 424, 432, 574, 675, 888
LweI GCATC 2 cut(s) 222, 943
MaeI CTAG 3 cut(s) 45, 360, 789
MaeIII GTNAC 3 cut(s) 577, 755, 856
MalI GATC 5 cut(s) 12, 294, 299, 1080, 1110
MboI GATC 5 cut(s) 10, 292, 297, 1078, 1108
MboII GAAGA 9 cut(s) 5, 527, 530, 734, 812, 890, 986, 991, 1180
MflI RGATCY 2 cut(s) 1078, 1108
MhlI GDGCHC 1 cut(s) 1124
MluCI AATT 8 cut(s) 91, 228, 521, 556, 712, 945, 1101, 1181
MlyI GAGTC 2 cut(s) 33, 790
MmeI TCCRAC 2 cut(s) 9, 609
MnlI CCTC 7 cut(s) 25, 230, 558, 605, 874, 1048, 1151
MseI TTAA 5 cut(s) 171, 548, 711, 936, 1195
MslI CAYNNNNRTG 1 cut(s) 1117
MspI CCGG 1 cut(s) 53
MvnI CGCG 2 cut(s) 76, 739
MwoI GCNNNNNNNGC 2 cut(s) 146, 1150
NdeI CATATG 1 cut(s) 843
NdeII GATC 5 cut(s) 10, 292, 297, 1078, 1108
NlaIII CATG 2 cut(s) 184, 564
NlaIV GGNNCC 2 cut(s) 51, 389
NmuCI GTSAC 1 cut(s) 577
OliI CACNNNNGTG 1 cut(s) 1117
PciSI GCTCTTC 1 cut(s) 795
PcsI WCGNNNNNNNCGW 1 cut(s) 540
PfeI GAWTC 2 cut(s) 376, 498
PflMI CCANNNNNTGG 1 cut(s) 430
PkrI GCNGC 1 cut(s) 738
PleI GAGTC 2 cut(s) 33, 789
PpsI GAGTC 2 cut(s) 33, 789
PspN4I GGNNCC 2 cut(s) 51, 389
PspPI GGNCC 1 cut(s) 734
PsuI RGATCY 2 cut(s) 1078, 1108
RsaI GTAC 2 cut(s) 289, 533
RsaNI GTAC 2 cut(s) 288, 532
RseI CAYNNNNRTG 1 cut(s) 1117
SapI GCTCTTC 1 cut(s) 795
SaqAI TTAA 5 cut(s) 171, 548, 711, 936, 1195
SatI GCNGC 1 cut(s) 737
Sau3AI GATC 5 cut(s) 10, 292, 297, 1078, 1108
Sau96I GGNCC 1 cut(s) 734
SchI GAGTC 2 cut(s) 33, 790
SduI GDGCHC 1 cut(s) 1124
SfaNI GCATC 2 cut(s) 222, 943
SfcI CTRYAG 2 cut(s) 450, 648
SmiMI CAYNNNNRTG 1 cut(s) 1117
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
Sse9I AATT 8 cut(s) 91, 228, 521, 556, 712, 945, 1101, 1181
SsiI CCGC 2 cut(s) 115, 737
SspMI CTAG 3 cut(s) 45, 360, 789
TaaI ACNGT 5 cut(s) 260, 287, 329, 336, 778
TaqI TCGA 4 cut(s) 300, 347, 573, 1105
TasI AATT 8 cut(s) 91, 228, 521, 556, 712, 945, 1101, 1181
TauI GCSGC 1 cut(s) 739
TfiI GAWTC 2 cut(s) 376, 498
Tru1I TTAA 5 cut(s) 171, 548, 711, 936, 1195
Tru9I TTAA 5 cut(s) 171, 548, 711, 936, 1195
TscAI CASTG 3 cut(s) 326, 915, 934
TseFI GTSAC 1 cut(s) 577
Tsp45I GTSAC 1 cut(s) 577
TspDTI ATGAA 3 cut(s) 549, 734, 952
TspGWI ACGGA 2 cut(s) 212, 369
TspRI CASTG 3 cut(s) 326, 915, 934
Van91I CCANNNNNTGG 1 cut(s) 430
XagI CCTNNNNNAGG 1 cut(s) 140
XapI RAATTY 3 cut(s) 228, 521, 1101
XspI CTAG 3 cut(s) 45, 360, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.