AT2G17310

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000186
Physical Location & Seq
Forward (+)
7531194 .. 7532412
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17310.1

Sequence Viewer

Length: 1113 bp
ATGGCTCTTCCGTGGGAGTTGGAGGAAGACATACTCTCTCGTCTGCCACCTATATCTCTTGTTCGATTCAGAACCGTGTCTAAACACTGGAACTCTCTTTTCAACGACAAGACTTTCATCAACAATCACTTGTCTCGCTCCCGTCCCGAATTCATTATCTTGACCAATTCCAAGATTTATTCGGTAGACATCATCGATCACAACAACATCGATCCAACGATAAGGTTGCATGAGATACCCACCTATGATATTCATAGCCGGGGTACAGATTTGAATCGCACAATTATAAATACTTGCGATGAGTTCTTGTTTTATAACTATCGGTATTGGGACAACATGACAGCTCTCTGGAATCCATGGTTGAGACAGGTTAGATGGATCGAGTACGCGAATCAAGAGTTCTGTGTTTTCGGCTTAGGGTACGATAATAGTAGACCCGAAAAGGTTTACAAGATCTTGGGCCATTTGTTTTGTCACGGTAAAGTCTTGAGAGATCAGAAAGTTGTGATCTACGAGTGTGCGTCTGACTCGTTGAGGTTTATTGATAGACCTGAGGATGACGACTGGCCCATAACTGAAACAGCTAAACGATCAAATGTGTCATTAAATGGAAATCTCTATTGGTTTGGTTGTAGTAATTATGAGAATGATGAGTACTACATCCGAATCTTTGATTTCTCGACGGAGGATTTCAAACCTTTTTGTCTCCTTCCGTGTCAAATGAGCCATAGTACTGATGAACTTGTCCTCGCGGTTTATAAGGGAGATCGGTTTTCGTTGTTAAAGCAATGCAGTGTAACAAGGGAGATTGGGGTATGGGTAACGAAAGAGAGGATTAGTAATGACAATGGGAACGGTGGAGAGGGCGTGGAGTGGTTAAAGTTGATGACCTTGTCAAAACCTAACTTGCCAAAGTTATTTGGTACGGTTAGTTACTTCATCTATGGGAAGACCTTATACATGTGTAATGGCGACGATGAAACTGCATTGGCTTGCATCTATATTGTGAGGGAAGATGTGTGCAAGAAGTTTCAAATAGGTTCTGGAAATATTAACTGTCGTCACTGTGTTTATACACCCAATTTGCTCTCGCTTCCTTTATTTATAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

370

Amino Acids

43.32

Weight (kDa)

5.77

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 39 4.4e-09 F-box domain
F-box-like PF12937 3 - 37 3.8e-06 F-box-like
FBA_1 PF07734 51 - 364 1.1e-78 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 287, 315, 759
AccI GTMKAC 2 cut(s) 186, 433
AccII CGCG 2 cut(s) 389, 752
AciI CCGC 1 cut(s) 752
AclWI GGATC 2 cut(s) 206, 386
AcsI RAATTY 1 cut(s) 149
AfaI GTAC 6 cut(s) 265, 386, 422, 656, 733, 925
AflIII ACRYGT 1 cut(s) 960
AgsI TTSAA 4 cut(s) 103, 274, 694, 1034
AjuI GAANNNNNNNTTGG 2 cut(s) 604, 636
AluBI AGCT 2 cut(s) 344, 584
AluI AGCT 2 cut(s) 344, 584
Alw26I GTCTC 3 cut(s) 138, 358, 710
AlwI GGATC 2 cut(s) 206, 386
AoxI GGCC 2 cut(s) 460, 566
ApoI RAATTY 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 460, 567
AsuC2I CCSGG 1 cut(s) 260
AxyI CCTNAGG 1 cut(s) 552
BarI GAAGNNNNNNTAC 2 cut(s) 941, 973
BbsI GAAGAC 2 cut(s) 33, 956
BccI CCATC 1 cut(s) 369
BcgI CGANNNNNNTGC 4 cut(s) 208, 242, 965, 999
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 3 cut(s) 138, 358, 710
BglII AGATCT 1 cut(s) 453
BmcAI AGTACT 2 cut(s) 656, 733
Bme1390I CCNGG 1 cut(s) 260
BmgT120I GGNCC 2 cut(s) 460, 567
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 1 cut(s) 1005
BpiI GAAGAC 2 cut(s) 33, 956
Bpu10I CCTNAGC 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 508
BpuMI CCSGG 1 cut(s) 260
Bsa29I ATCGAT 2 cut(s) 195, 210
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 3 cut(s) 11, 259, 356
BsaXI ACNNNNNCTCC 2 cut(s) 852, 882
Bse1I ACTGG 2 cut(s) 92, 569
Bse21I CCTNAGG 1 cut(s) 552
Bse3DI GCAATG 1 cut(s) 794
Bse8I GATNNNNATC 1 cut(s) 273
BseCI ATCGAT 2 cut(s) 195, 210
BseDI CCNNGG 3 cut(s) 11, 259, 356
BseGI GGATG 2 cut(s) 562, 660
BseJI GATNNNNATC 1 cut(s) 273
BseMI GCAATG 1 cut(s) 794
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 2 cut(s) 92, 569
Bsh1236I CGCG 2 cut(s) 389, 752
BshFI GGCC 2 cut(s) 462, 568
BshVI ATCGAT 2 cut(s) 195, 210
BsiSI CCGG 1 cut(s) 259
BslFI GGGAC 2 cut(s) 129, 344
BsmAI GTCTC 3 cut(s) 138, 358, 710
BsmFI GGGAC 2 cut(s) 129, 344
BsnI GGCC 2 cut(s) 462, 568
Bsp143I GATC 8 cut(s) 196, 211, 378, 453, 493, 507, 590, 766
Bsp19I CCATGG 1 cut(s) 356
BspACI CCGC 1 cut(s) 752
BspANI GGCC 2 cut(s) 462, 568
BspCNI CTCAG 1 cut(s) 544
BspDI ATCGAT 2 cut(s) 195, 210
BspFNI CGCG 2 cut(s) 389, 752
BspPI GGATC 2 cut(s) 206, 386
BspQI GCTCTTC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 794
BsrI ACTGG 2 cut(s) 92, 569
BssECI CCNNGG 3 cut(s) 11, 259, 356
BssMI GATC 8 cut(s) 196, 211, 378, 453, 493, 507, 590, 766
BssT1I CCWWGG 1 cut(s) 356
Bst4CI ACNGT 6 cut(s) 76, 479, 857, 928, 1058, 1067
Bst6I CTCTTC 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 994
BstDEI CTNAG 2 cut(s) 415, 552
BstDSI CCRYGG 2 cut(s) 11, 356
BstF5I GGATG 2 cut(s) 562, 660
BstFNI CGCG 2 cut(s) 389, 752
BstKTI GATC 8 cut(s) 199, 214, 381, 456, 496, 510, 593, 769
BstMAI GTCTC 3 cut(s) 138, 358, 710
BstMBI GATC 8 cut(s) 196, 211, 378, 453, 493, 507, 590, 766
BstNSI RCATGY 1 cut(s) 964
BstSCI CCNGG 1 cut(s) 258
BstUI CGCG 2 cut(s) 389, 752
BstV2I GAAGAC 2 cut(s) 33, 956
BstX2I RGATCY 1 cut(s) 453
BstYI RGATCY 1 cut(s) 453
Bsu15I ATCGAT 2 cut(s) 195, 210
Bsu36I CCTNAGG 1 cut(s) 552
BsuRI GGCC 2 cut(s) 462, 568
BsuTUI ATCGAT 2 cut(s) 195, 210
BtgI CCRYGG 2 cut(s) 11, 356
BtgZI GCGATG 1 cut(s) 312
BtsCI GGATG 2 cut(s) 562, 660
BtsI GCAGTG 1 cut(s) 799
BtsIMutI CAGTG 3 cut(s) 85, 799, 1063
Cac8I GCNNGC 1 cut(s) 994
Cfr13I GGNCC 2 cut(s) 460, 567
ClaI ATCGAT 2 cut(s) 195, 210
CseI GACGC 1 cut(s) 510
Csp6I GTAC 6 cut(s) 264, 385, 421, 655, 732, 924
CviAII CATG 4 cut(s) 230, 337, 357, 961
CviJI RGCY 9 cut(s) 5, 258, 344, 414, 462, 568, 584, 726, 992
CviKI_1 RGCY 9 cut(s) 5, 258, 344, 414, 462, 568, 584, 726, 992
CviQI GTAC 6 cut(s) 264, 385, 421, 655, 732, 924
DdeI CTNAG 2 cut(s) 415, 552
DpnI GATC 8 cut(s) 198, 213, 380, 455, 495, 509, 592, 768
DpnII GATC 8 cut(s) 196, 211, 378, 453, 493, 507, 590, 766
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 356
Eco81I CCTNAGG 1 cut(s) 552
EcoRI GAATTC 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 4 cut(s) 233, 340, 360, 964
FaqI GGGAC 2 cut(s) 129, 344
FatI CATG 4 cut(s) 229, 336, 356, 960
FblI GTMKAC 2 cut(s) 186, 433
FokI GGATG 2 cut(s) 569, 647
HaeIII GGCC 2 cut(s) 462, 568
HapII CCGG 1 cut(s) 259
HgaI GACGC 1 cut(s) 510
Hin1II CATG 4 cut(s) 233, 340, 360, 964
HinfI GANTC 6 cut(s) 66, 274, 352, 391, 527, 666
HpaII CCGG 1 cut(s) 259
Hpy166II GTNNAC 3 cut(s) 187, 434, 448
Hpy188I TCNGA 4 cut(s) 71, 498, 526, 665
Hpy188III TCNNGA 7 cut(s) 146, 160, 349, 395, 487, 679, 1044
Hpy8I GTNNAC 3 cut(s) 187, 434, 448
Hpy99I CGWCG 2 cut(s) 685, 977
HpyAV CCTTC 1 cut(s) 719
HpyCH4III ACNGT 6 cut(s) 76, 479, 857, 928, 1058, 1067
HpyCH4V TGCA 5 cut(s) 229, 792, 986, 996, 1023
HpyF3I CTNAG 2 cut(s) 415, 552
Hsp92II CATG 4 cut(s) 233, 340, 360, 964
Kzo9I GATC 8 cut(s) 196, 211, 378, 453, 493, 507, 590, 766
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 7 cut(s) 73, 272, 334, 353, 550, 564, 1029
LweI GCATC 1 cut(s) 1005
MaeIII GTNAC 5 cut(s) 473, 796, 820, 932, 1061
MalI GATC 8 cut(s) 198, 213, 380, 455, 495, 509, 592, 768
MboI GATC 8 cut(s) 196, 211, 378, 453, 493, 507, 590, 766
MboII GAAGA 3 cut(s) 38, 961, 1025
MflI RGATCY 1 cut(s) 453
MluCI AATT 5 cut(s) 149, 166, 282, 637, 1081
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 1 cut(s) 239
MnlI CCTC 8 cut(s) 16, 528, 547, 679, 758, 825, 856, 1002
MseI TTAA 4 cut(s) 605, 782, 878, 1053
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 1 cut(s) 260
MvnI CGCG 2 cut(s) 389, 752
NciI CCSGG 1 cut(s) 260
NcoI CCATGG 1 cut(s) 356
NdeII GATC 8 cut(s) 196, 211, 378, 453, 493, 507, 590, 766
NlaIII CATG 4 cut(s) 233, 340, 360, 964
NmuCI GTSAC 2 cut(s) 473, 1061
NspI RCATGY 1 cut(s) 964
PciI ACATGT 1 cut(s) 960
PciSI GCTCTTC 1 cut(s) 12
PfeI GAWTC 5 cut(s) 66, 274, 352, 391, 666
PflFI GACNNNGTC 1 cut(s) 892
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
PscI ACATGT 1 cut(s) 960
PsiI TTATAA 3 cut(s) 287, 315, 759
PspPI GGNCC 2 cut(s) 460, 567
PsuI RGATCY 1 cut(s) 453
PsyI GACNNNGTC 1 cut(s) 892
RsaI GTAC 6 cut(s) 265, 386, 422, 656, 733, 925
RsaNI GTAC 6 cut(s) 264, 385, 421, 655, 732, 924
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 4 cut(s) 605, 782, 878, 1053
Sau3AI GATC 8 cut(s) 196, 211, 378, 453, 493, 507, 590, 766
Sau96I GGNCC 2 cut(s) 460, 567
ScaI AGTACT 2 cut(s) 656, 733
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 260
SfaNI GCATC 1 cut(s) 1005
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
Sse9I AATT 5 cut(s) 149, 166, 282, 637, 1081
SsiI CCGC 1 cut(s) 752
SspI AATATT 1 cut(s) 1051
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 6 cut(s) 76, 479, 857, 928, 1058, 1067
TaqI TCGA 5 cut(s) 64, 195, 210, 381, 680
TasI AATT 5 cut(s) 149, 166, 282, 637, 1081
TatI WGTACW 2 cut(s) 654, 731
TfiI GAWTC 5 cut(s) 66, 274, 352, 391, 666
Tru1I TTAA 4 cut(s) 605, 782, 878, 1053
Tru9I TTAA 4 cut(s) 605, 782, 878, 1053
TscAI CASTG 3 cut(s) 92, 799, 1070
TseFI GTSAC 2 cut(s) 473, 1061
Tsp45I GTSAC 2 cut(s) 473, 1061
TspDTI ATGAA 6 cut(s) 106, 142, 242, 753, 928, 993
TspGWI ACGGA 2 cut(s) 698, 702
TspRI CASTG 3 cut(s) 92, 799, 1070
Tth111I GACNNNGTC 1 cut(s) 892
XapI RAATTY 1 cut(s) 149
XceI RCATGY 1 cut(s) 964
XmiI GTMKAC 2 cut(s) 186, 433
ZrmI AGTACT 2 cut(s) 656, 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.