AT3G13830

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
4553943 .. 4555076
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13830.1

Sequence Viewer

Length: 1134 bp
ATGACGACGACGACGACGACGACGATGTCAACTCTTCCAATGGTTTTGGTAGACGAGATTCTCTCTAGGGTTCCCATTACATCTCTTAGATCACTAAGATCAACGTGCAAAAGATGGGAGGCTCAATCGAAAACCAATCTTGTAGGTGGTAAAGCAACCGCAAGGAAAAGCAGTTACTTAGGGTTTATCCTCATTGGTAACAAGATCTGTTCAATGAAGCTCGACCTAAATGGCGGCGATGACTTTGTTGACACATCAGTGAATCAAATAAGTGCATTCGATGACTTCGAGATATCTCAACTCTTTCACTGCGACGGCTTATTGCTTTGCGTCTCCAATAAACACTACTACAGCAACACGGTCATGGTATGTAACATGTACTTGGGGGAAACTAGGTTGATTGAACACTGTTGCTTGTTGGAGGGATTCGACAACTTCGGCTCGTATGCTTTCGGATATGATAGCAGCAAAAACCGTAACCACAAAATCTTTAGAAAGAAACTTGTTTCTGGTGGTTATGAAATCTACAGTTTCAAATCCGATTCATGGAAAGATCTTAATGTTGATCTCGGGGAATCTACAGAACTTTGTGAACTAGGAAGCGTGTCTTTGAAGGGAAATGCTTACTTTTCGGTTATAACGAAACATGAAGAAGAAGAACTTTGGGAAAATAATTTACTCTGTTTTGACTTCACGACGGAGAGTTTTGGAAAGTTTCTGTCTCTGCCGTTTGACAATGTGACTGCTGAAGAAGAATTCGGCATTATGGTTTTATCTTGTGTTAGAGATGAGCATCTTGCTGTGTTATATCAACTTGACACTTTAGGTATTTGGATTTCGACTGAGATCGAGCCCAATAAGGTGTCGTGGAGAGAGTTTTTGCAAGTAGACTTGTATACGCTGGATGGTTTTCCGGATGCATTTACAGCTGGGAGATTCATTGTTGACGAGGAGAAGCAAGTCGTTGTAGTTTTCAATGAAGCTACAGAGATCGATCTCAACCACGGAAACGCTTTCATCTTTGGAAGAGATGGATACTTCACCTCTTTTAACGTTGGAGATACTCCGCCCCAAGACTTCACTTCTTATGTTCCAAGCTTAGCCTCATTGCAAATCGAGAAGACGGGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

377

Amino Acids

42.45

Weight (kDa)

4.67

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 43 3.9e-06 F-box domain
FBA_1 PF07734 62 - 369 8.8e-79 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 638
AasI GACNNNNNNGTC 1 cut(s) 25
AccI GTMKAC 3 cut(s) 51, 888, 896
AccIII TCCGGA 1 cut(s) 913
AciI CCGC 3 cut(s) 159, 234, 1067
AclI AACGTT 1 cut(s) 1053
AcsI RAATTY 1 cut(s) 755
AcuI CTGAAG 1 cut(s) 768
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 546
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 5 cut(s) 213, 404, 535, 613, 976
AleI CACNNNNGTG 1 cut(s) 257
AluBI AGCT 4 cut(s) 220, 929, 983, 1098
AluI AGCT 4 cut(s) 220, 929, 983, 1098
Alw26I GTCTC 2 cut(s) 337, 726
Ama87I CYCGRG 1 cut(s) 569
Aor13HI TCCGGA 1 cut(s) 913
ApeKI GCWGC 1 cut(s) 465
ApoI RAATTY 1 cut(s) 755
AsuHPI GGTGA 1 cut(s) 1033
AvaI CYCGRG 1 cut(s) 569
BanII GRGCYC 1 cut(s) 855
BbsI GAAGAC 1 cut(s) 1127
BbvI GCAGC 1 cut(s) 477
BccI CCATC 3 cut(s) 108, 899, 1025
BceAI ACGGC 2 cut(s) 331, 712
BciVI GTATCC 1 cut(s) 1028
BcoDI GTCTC 2 cut(s) 337, 726
BfaI CTAG 3 cut(s) 66, 393, 596
BfmI CTRYAG 4 cut(s) 349, 526, 579, 984
BfuI GTATCC 1 cut(s) 1028
BglII AGATCT 2 cut(s) 204, 553
BisI GCNGC 2 cut(s) 235, 466
BlpI GCTNAGC 1 cut(s) 1099
BlsI GCNGC 2 cut(s) 236, 467
BmeT110I CYCGRG 1 cut(s) 569
BmiI GGNNCC 1 cut(s) 72
BmsI GCATC 2 cut(s) 802, 907
BpiI GAAGAC 1 cut(s) 1127
BplI GAGNNNNNCTC 2 cut(s) 47, 79
Bpu1102I GCTNAGC 1 cut(s) 1099
Bsa29I ATCGAT 1 cut(s) 993
BsaBI GATNNNNATC 1 cut(s) 792
BsaJI CCNNGG 1 cut(s) 1003
BsaWI WCCGGW 1 cut(s) 913
Bsc4I CCNNNNNNNGG 1 cut(s) 546
Bse3DI GCAATG 1 cut(s) 1106
Bse8I GATNNNNATC 1 cut(s) 792
BseAI TCCGGA 1 cut(s) 913
BseCI ATCGAT 1 cut(s) 993
BseDI CCNNGG 1 cut(s) 1003
BseGI GGATG 2 cut(s) 910, 922
BseJI GATNNNNATC 1 cut(s) 792
BseLI CCNNNNNNNGG 1 cut(s) 546
BseMI GCAATG 1 cut(s) 1106
BseMII CTCAG 1 cut(s) 834
BseRI GAGGAG 1 cut(s) 965
BseXI GCAGC 1 cut(s) 477
BseYI CCCAGC 1 cut(s) 929
BshVI ATCGAT 1 cut(s) 993
BsiHKCI CYCGRG 1 cut(s) 569
BsiSI CCGG 1 cut(s) 914
BslI CCNNNNNNNGG 1 cut(s) 546
BsmAI GTCTC 2 cut(s) 337, 726
BsmBI CGTCTC 1 cut(s) 337
BsmI GAATGC 1 cut(s) 275
BsoBI CYCGRG 1 cut(s) 569
Bsp1286I GDGCHC 1 cut(s) 855
Bsp13I TCCGGA 1 cut(s) 913
Bsp143I GATC 8 cut(s) 89, 98, 204, 553, 565, 846, 990, 994
Bsp1720I GCTNAGC 1 cut(s) 1099
BspACI CCGC 3 cut(s) 159, 234, 1067
BspCNI CTCAG 1 cut(s) 835
BspDI ATCGAT 1 cut(s) 993
BspEI TCCGGA 1 cut(s) 913
BspLI GGNNCC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 1106
BssECI CCNNGG 1 cut(s) 1003
BssMI GATC 8 cut(s) 89, 98, 204, 553, 565, 846, 990, 994
BssNAI GTATAC 1 cut(s) 897
Bst1107I GTATAC 1 cut(s) 897
Bst4CI ACNGT 4 cut(s) 361, 410, 476, 530
Bst6I CTCTTC 2 cut(s) 39, 1021
BstDEI CTNAG 5 cut(s) 86, 95, 178, 843, 1099
BstDSI CCRYGG 1 cut(s) 1003
BstF5I GGATG 2 cut(s) 910, 922
BstKTI GATC 8 cut(s) 92, 101, 207, 556, 568, 849, 993, 997
BstMAI GTCTC 2 cut(s) 337, 726
BstMBI GATC 8 cut(s) 89, 98, 204, 553, 565, 846, 990, 994
BstMWI GCNNNNNNNGC 1 cut(s) 926
BstNSI RCATGY 1 cut(s) 379
BstSFI CTRYAG 4 cut(s) 349, 526, 579, 984
BstV1I GCAGC 1 cut(s) 477
BstV2I GAAGAC 1 cut(s) 1127
BstX2I RGATCY 2 cut(s) 204, 553
BstYI RGATCY 2 cut(s) 204, 553
BstZ17I GTATAC 1 cut(s) 897
Bsu15I ATCGAT 1 cut(s) 993
BsuI GTATCC 1 cut(s) 1028
BsuTUI ATCGAT 1 cut(s) 993
BtgI CCRYGG 1 cut(s) 1003
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 2 cut(s) 910, 922
BtsI GCAGTG 1 cut(s) 307
BtsIMutI CAGTG 3 cut(s) 264, 307, 406
ClaI ATCGAT 1 cut(s) 993
CseI GACGC 1 cut(s) 319
Csp6I GTAC 1 cut(s) 379
CviAII CATG 4 cut(s) 364, 376, 546, 647
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 5 cut(s) 86, 95, 178, 843, 1099
DpnI GATC 8 cut(s) 91, 100, 206, 555, 567, 848, 992, 996
DpnII GATC 8 cut(s) 89, 98, 204, 553, 565, 846, 990, 994
DrdI GACNNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 39, 1021
EarI CTCTTC 2 cut(s) 39, 1021
EciI GGCGGA 1 cut(s) 1056
Eco24I GRGCYC 1 cut(s) 855
Eco32I GATATC 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 768
Eco88I CYCGRG 1 cut(s) 569
EcoRI GAATTC 1 cut(s) 755
EcoRV GATATC 1 cut(s) 294
EcoT22I ATGCAT 1 cut(s) 922
EcoT38I GRGCYC 1 cut(s) 855
Esp3I CGTCTC 1 cut(s) 337
FaeI CATG 4 cut(s) 367, 379, 549, 650
FalI AAGNNNNNCTT 4 cut(s) 592, 624, 645, 677
FatI CATG 4 cut(s) 363, 375, 545, 646
FblI GTMKAC 3 cut(s) 51, 888, 896
Fnu4HI GCNGC 2 cut(s) 235, 466
FokI GGATG 2 cut(s) 917, 929
FriOI GRGCYC 1 cut(s) 855
Fsp4HI GCNGC 2 cut(s) 235, 466
FspBI CTAG 3 cut(s) 66, 393, 596
GluI GCNGC 2 cut(s) 235, 466
GsaI CCCAGC 1 cut(s) 933
HapII CCGG 1 cut(s) 914
HgaI GACGC 1 cut(s) 319
Hin1II CATG 4 cut(s) 367, 379, 549, 650
HincII GTYRAC 3 cut(s) 30, 250, 946
HindII GTYRAC 3 cut(s) 30, 250, 946
HindIII AAGCTT 1 cut(s) 1096
HinfI GANTC 6 cut(s) 58, 262, 426, 542, 575, 936
HpaII CCGG 1 cut(s) 914
HphI GGTGA 1 cut(s) 1033
Hpy166II GTNNAC 7 cut(s) 30, 52, 250, 593, 889, 897, 946
Hpy188I TCNGA 2 cut(s) 455, 541
Hpy188III TCNNGA 4 cut(s) 289, 694, 914, 1117
Hpy8I GTNNAC 7 cut(s) 30, 52, 250, 593, 889, 897, 946
Hpy99I CGWCG 8 cut(s) 10, 13, 16, 19, 22, 25, 317, 700
HpyAV CCTTC 1 cut(s) 607
HpyCH4III ACNGT 4 cut(s) 361, 410, 476, 530
HpyCH4IV ACGT 2 cut(s) 104, 1053
HpyCH4V TGCA 5 cut(s) 108, 275, 883, 920, 1111
HpyF10VI GCNNNNNNNGC 1 cut(s) 926
HpyF3I CTNAG 5 cut(s) 86, 95, 178, 843, 1099
HpySE526I ACGT 2 cut(s) 104, 1053
Hsp92II CATG 4 cut(s) 367, 379, 549, 650
Kpn2I TCCGGA 1 cut(s) 913
Kzo9I GATC 8 cut(s) 89, 98, 204, 553, 565, 846, 990, 994
LpnPI CCDG 4 cut(s) 495, 887, 915, 927
Lsp1109I GCAGC 1 cut(s) 477
LweI GCATC 2 cut(s) 802, 907
MaeI CTAG 3 cut(s) 66, 393, 596
MaeII ACGT 2 cut(s) 104, 1053
MaeIII GTNAC 5 cut(s) 173, 197, 371, 476, 739
MalI GATC 8 cut(s) 91, 100, 206, 555, 567, 848, 992, 996
MboI GATC 8 cut(s) 89, 98, 204, 553, 565, 846, 990, 994
MboII GAAGA 8 cut(s) 26, 662, 665, 668, 761, 764, 1038, 1132
MflI RGATCY 2 cut(s) 204, 553
MhlI GDGCHC 1 cut(s) 855
MluCI AATT 2 cut(s) 673, 755
MmeI TCCRAC 2 cut(s) 399, 1036
MnlI CCTC 6 cut(s) 112, 200, 415, 943, 1054, 1114
Mph1103I ATGCAT 1 cut(s) 922
MroI TCCGGA 1 cut(s) 913
MseI TTAA 2 cut(s) 558, 1050
MslI CAYNNNNRTG 2 cut(s) 257, 362
MspA1I CMGCKG 1 cut(s) 929
MspI CCGG 1 cut(s) 914
Mva1269I GAATGC 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 926
NdeII GATC 8 cut(s) 89, 98, 204, 553, 565, 846, 990, 994
NlaIII CATG 4 cut(s) 367, 379, 549, 650
NlaIV GGNNCC 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 739
NsiI ATGCAT 1 cut(s) 922
NspI RCATGY 1 cut(s) 379
OliI CACNNNNGTG 1 cut(s) 257
PciI ACATGT 1 cut(s) 375
PcsI WCGNNNNNNNCGW 6 cut(s) 11, 14, 17, 20, 285, 638
PctI GAATGC 1 cut(s) 275
PfeI GAWTC 6 cut(s) 58, 262, 426, 542, 575, 936
PflFI GACNNNGTC 1 cut(s) 25
PkrI GCNGC 2 cut(s) 236, 467
PscI ACATGT 1 cut(s) 375
PsiI TTATAA 1 cut(s) 638
Psp1406I AACGTT 1 cut(s) 1053
PspFI CCCAGC 1 cut(s) 929
PspN4I GGNNCC 1 cut(s) 72
PsuI RGATCY 2 cut(s) 204, 553
PsyI GACNNNGTC 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 929
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
RseI CAYNNNNRTG 2 cut(s) 257, 362
SaqAI TTAA 2 cut(s) 558, 1050
SatI GCNGC 2 cut(s) 235, 466
Sau3AI GATC 8 cut(s) 89, 98, 204, 553, 565, 846, 990, 994
SduI GDGCHC 1 cut(s) 855
SfaNI GCATC 2 cut(s) 802, 907
SfcI CTRYAG 4 cut(s) 349, 526, 579, 984
SmiMI CAYNNNNRTG 2 cut(s) 257, 362
Sse9I AATT 2 cut(s) 673, 755
SsiI CCGC 3 cut(s) 159, 234, 1067
SspMI CTAG 3 cut(s) 66, 393, 596
TaaI ACNGT 4 cut(s) 361, 410, 476, 530
TaiI ACGT 2 cut(s) 107, 1056
TaqI TCGA 9 cut(s) 128, 222, 279, 288, 429, 839, 849, 993, 1116
TasI AATT 2 cut(s) 673, 755
TatI WGTACW 1 cut(s) 378
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 6 cut(s) 58, 262, 426, 542, 575, 936
Tru1I TTAA 2 cut(s) 558, 1050
Tru9I TTAA 2 cut(s) 558, 1050
TscAI CASTG 3 cut(s) 264, 314, 413
TseFI GTSAC 1 cut(s) 739
TseI GCWGC 1 cut(s) 465
Tsp45I GTSAC 1 cut(s) 739
TspDTI ATGAA 7 cut(s) 230, 534, 534, 663, 928, 993, 1006
TspGWI ACGGA 2 cut(s) 713, 1020
TspRI CASTG 3 cut(s) 264, 314, 413
Tth111I GACNNNGTC 1 cut(s) 25
XapI RAATTY 1 cut(s) 755
XceI RCATGY 1 cut(s) 379
XmiI GTMKAC 3 cut(s) 51, 888, 896
XspI CTAG 3 cut(s) 66, 393, 596
Zsp2I ATGCAT 1 cut(s) 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.