AT3G16020

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
5437962 .. 5439461
1500 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16020.1

Sequence Viewer

Length: 297 bp
ATGAGAGCTTTACTAAGAATCGCATTACTCAAGTATATTCATCAGCAGTTAGAAGAGAAGGGTGATCTTCAGGCGATTGTCTTGTTAAAGTATAGTCTTTATTCGATGAGCGTCAATATCCATGGACTTCATAACGACTTTGCTCCATCTATAACGTCTAGAGATACTGTGACTCTATCTAGTGTTAGAGAAGAGCAGCTTGAGGTGTTGTTTCAGAACTGTCATACTCTTGAGATGGAGATTTGGGTTACGACCAACATTGAGCCCAATGCAATGTCCTGGAGCAAGTTCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

98

Amino Acids

11.36

Weight (kDa)

5.72

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 53 - 98 1.5e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 53
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 2 cut(s) 8, 199
AluI AGCT 2 cut(s) 8, 199
ApeKI GCWGC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 74
BanII GRGCYC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 208
BccI CCATC 2 cut(s) 154, 229
BciT130I CCWGG 1 cut(s) 280
BfaI CTAG 2 cut(s) 159, 180
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 280
BmrFI CCNGG 1 cut(s) 280
BpuEI CTTGAG 3 cut(s) 14, 221, 251
BsaJI CCNNGG 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 121
BseMI GCAATG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 1 cut(s) 64
Bsp19I CCATGG 1 cut(s) 121
BspQI GCTCTTC 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 2 cut(s) 169, 221
Bst6I CTCTTC 2 cut(s) 48, 186
BstDEI CTNAG 1 cut(s) 14
BstDSI CCRYGG 1 cut(s) 121
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 121
CseI GACGC 1 cut(s) 100
CviAII CATG 1 cut(s) 122
CviJI RGCY 3 cut(s) 8, 199, 265
CviKI_1 RGCY 3 cut(s) 8, 199, 265
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 48, 186
EarI CTCTTC 2 cut(s) 48, 186
Eco130I CCWWGG 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 1 cut(s) 125
FaiI YATR 7 cut(s) 36, 93, 123, 132, 152, 225, 295
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FatI CATG 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 2 cut(s) 159, 180
GluI GCNGC 1 cut(s) 197
HgaI GACGC 1 cut(s) 100
Hin1II CATG 1 cut(s) 125
HinfI GANTC 2 cut(s) 18, 172
HphI GGTGA 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 2 cut(s) 159, 230
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 2 cut(s) 169, 221
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 1 cut(s) 272
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 1 cut(s) 125
Kzo9I GATC 1 cut(s) 64
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 2 cut(s) 148, 282
LpnPI CCDG 3 cut(s) 56, 265, 292
Lsp1109I GCAGC 1 cut(s) 208
MaeI CTAG 2 cut(s) 159, 180
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 2 cut(s) 169, 247
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 3 cut(s) 59, 65, 203
MhlI GDGCHC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 1 cut(s) 196
MseI TTAA 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 280
NcoI CCATGG 1 cut(s) 121
NdeII GATC 1 cut(s) 64
NlaIII CATG 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 18
PfoI TCCNGGA 1 cut(s) 278
PkrI GCNGC 1 cut(s) 198
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 1 cut(s) 64
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 280
SduI GDGCHC 1 cut(s) 267
SetI ASST 4 cut(s) 10, 158, 201, 207
SmlI CTYRAG 3 cut(s) 29, 200, 230
SmoI CTYRAG 3 cut(s) 29, 200, 230
SspMI CTAG 2 cut(s) 159, 180
StyD4I CCNGG 1 cut(s) 278
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 2 cut(s) 169, 221
TaiI ACGT 1 cut(s) 158
TaqI TCGA 1 cut(s) 104
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 2 cut(s) 29, 119
XbaI TCTAGA 1 cut(s) 158
XspI CTAG 2 cut(s) 159, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.