AT4G17200

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000186
Physical Location & Seq
Forward (+)
9651108 .. 9652253
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17200.1

Sequence Viewer

Length: 1146 bp
ATGACGACAATGTCTGATCTTTCACCAGATTTGGTAGGGGAGATTCTCACTAGGGTTCCGATGACATCTTTGATTTCAGTACGGTGTACTTGCAAAATGTGGAACGCTTTATCCAAAGAAGGTATTTTCTTTAAAGCAGCAAGGAAGCAGTTTATGGGATTCACGATGATGGATTCTAGGGTTTGTTCAATGAAGTTTGATCTCCAAGGAATCCGAAACAACGAACATGACTTTGTTGATCCATGTATAAAGCAAATTGCTAAACTTGATCAAATCGAGGTATCTAAAGTCCTTCAATGCGATGGTTTGTTGTTATGCGTCGGTAAGGACAACTCGAGGCTTCTAGTGTGGAATCCTTATTTAGGGCAAACAAGGTTTATCAAACCAAGAAAAAGGTTTAACAAACTCGAATGGTACGCTCTCGGATATGACAATAACCACAACTACAAAATCTTGATGAACTATGATACAGGGCACCTTTTTGGTTACGAAATCTACGACTTTAGCTCTGATTCATGGAGGGTTCTTGATGTCAGTCCCGACTGCCATATACCGTTTCATCAACAGAGCGTGTCTTTGAATGGAAACACTTATTTTCTTGCTCAAGAGAAGATAATTGTGGAAGGAGAAGAAGAAGAAGTAGTAGATGAGATTGAAAAGTTTTTACTCTGTTTTGATTTTACTACAGAGAGGTTTGGACCGCGTCTTCCTCTGCCATTTCACTCTGATGTTTTGGAAACTGTGGCTATATCTTGTGTTAGAGATGATCAGCTTGCGGTGTTATATCAGCGGTTTGAAACATGGGAGATTTGGGTAACCACTAAGATCGATCCCACTGCGGTGTCCTGGAGCATGTTTTTGTCAGTGGATATGGAACCACCCACTGGTTGTCAGTTCGATGATGAAGCTGGGAGCTTCTTTATTGACGAAGAGAACAAAGTCGCTGTATTTTTTAATTCAGACTTGTTTAACCCAAGAGTAGAAAACCGAAACCGCCGCTACCCGACAGCTTACATCATTGGACAAGACGGATACTTCAAATCCGCGACTCTCCGGGAAGCTCCCGATCTCGTAAAACCTGACCCCTACGTGTATTGTTGCCCACTTGTGTGGTCTTCTTATGCTCCAAGCTTAGTGCAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

381

Amino Acids

44.12

Weight (kDa)

4.92

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 40 8.3e-07 F-box domain
FBA_1 PF07734 53 - 381 8.4e-107 F-box associated beta propeller domain
FBA_3 PF08268 93 - 232 4.1e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
AccB1I GGYRCC 1 cut(s) 474
AccB7I CCANNNNNTGG 1 cut(s) 884
AccII CGCG 2 cut(s) 703, 1046
AciI CCGC 7 cut(s) 701, 776, 790, 839, 994, 997, 1044
AclWI GGATC 2 cut(s) 233, 824
AfaI GTAC 3 cut(s) 81, 88, 416
AfiI CCNNNNNNNGG 2 cut(s) 362, 884
AflIII ACRYGT 1 cut(s) 1089
AgsI TTSAA 6 cut(s) 189, 296, 580, 656, 797, 1039
AjnI CCWGG 1 cut(s) 845
AleI CACNNNNGTG 2 cut(s) 839, 1108
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 7 cut(s) 507, 772, 908, 915, 1010, 1061, 1131
AluI AGCT 7 cut(s) 507, 772, 908, 915, 1010, 1061, 1131
AlwI GGATC 2 cut(s) 233, 824
Ama87I CYCGRG 1 cut(s) 334
ApeKI GCWGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 698
AsuC2I CCSGG 1 cut(s) 1055
AsuHPI GGTGA 1 cut(s) 15
AvaI CYCGRG 1 cut(s) 334
AvaII GGWCC 1 cut(s) 698
BaeGI GKGCMC 1 cut(s) 477
BanI GGYRCC 1 cut(s) 474
BbsI GAAGAC 2 cut(s) 698, 1107
BbvI GCAGC 1 cut(s) 149
BccI CCATC 2 cut(s) 163, 296
BcgI CGANNNNNNTGC 2 cut(s) 818, 852
BciT130I CCWGG 1 cut(s) 847
BciVI GTATCC 1 cut(s) 1025
BclI TGATCA 2 cut(s) 268, 766
BcnI CCSGG 1 cut(s) 1055
BfaI CTAG 3 cut(s) 51, 177, 344
BfmI CTRYAG 1 cut(s) 684
BfuI GTATCC 1 cut(s) 1025
BisI GCNGC 2 cut(s) 138, 997
BlsI GCNGC 2 cut(s) 139, 998
Bme1390I CCNGG 2 cut(s) 847, 1055
Bme18I GGWCC 1 cut(s) 698
BmeT110I CYCGRG 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 698
BmiI GGNNCC 3 cut(s) 57, 476, 876
BmrFI CCNGG 2 cut(s) 847, 1055
BpiI GAAGAC 2 cut(s) 698, 1107
BpmI CTGGAG 1 cut(s) 868
BpuEI CTTGAG 1 cut(s) 588
BpuMI CCSGG 1 cut(s) 1055
Bsa29I ATCGAT 1 cut(s) 828
BsaAI YACGTR 1 cut(s) 1090
BsaJI CCNNGG 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 884
Bse1I ACTGG 1 cut(s) 889
BseBI CCWGG 1 cut(s) 847
BseCI ATCGAT 1 cut(s) 828
BseDI CCNNGG 1 cut(s) 205
BseLI CCNNNNNNNGG 2 cut(s) 362, 884
BseNI ACTGG 1 cut(s) 889
BseSI GKGCMC 1 cut(s) 477
BseXI GCAGC 1 cut(s) 149
BseYI CCCAGC 1 cut(s) 908
Bsh1236I CGCG 2 cut(s) 703, 1046
BshNI GGYRCC 1 cut(s) 474
BshVI ATCGAT 1 cut(s) 828
BsiHKCI CYCGRG 1 cut(s) 334
BsiSI CCGG 1 cut(s) 1054
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 2 cut(s) 362, 884
BsmFI GGGAC 1 cut(s) 522
BsoBI CYCGRG 1 cut(s) 334
Bsp1286I GDGCHC 1 cut(s) 477
Bsp143I GATC 8 cut(s) 16, 199, 238, 268, 766, 825, 829, 1066
BspACI CCGC 7 cut(s) 701, 776, 790, 839, 994, 997, 1044
BspDI ATCGAT 1 cut(s) 828
BspFNI CGCG 2 cut(s) 703, 1046
BspLI GGNNCC 3 cut(s) 57, 476, 876
BspPI GGATC 2 cut(s) 233, 824
BspT107I GGYRCC 1 cut(s) 474
BsrI ACTGG 1 cut(s) 889
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 8 cut(s) 16, 199, 238, 268, 766, 825, 829, 1066
BssT1I CCWWGG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 847
Bst4CI ACNGT 3 cut(s) 84, 555, 742
Bst6I CTCTTC 1 cut(s) 924
BstBAI YACGTR 1 cut(s) 1090
BstC8I GCNNGC 1 cut(s) 774
BstDEI CTNAG 2 cut(s) 822, 1132
BstEII GGTNACC 1 cut(s) 814
BstENI CCTNNNNNAGG 1 cut(s) 360
BstFNI CGCG 2 cut(s) 703, 1046
BstKTI GATC 8 cut(s) 19, 202, 241, 271, 769, 828, 832, 1069
BstMBI GATC 8 cut(s) 16, 199, 238, 268, 766, 825, 829, 1066
BstNI CCWGG 1 cut(s) 847
BstNSI RCATGY 1 cut(s) 856
BstPI GGTNACC 1 cut(s) 814
BstSCI CCNGG 2 cut(s) 845, 1053
BstSFI CTRYAG 1 cut(s) 684
BstSLI GKGCMC 1 cut(s) 477
BstUI CGCG 2 cut(s) 703, 1046
BstV1I GCAGC 1 cut(s) 149
BstV2I GAAGAC 2 cut(s) 698, 1107
BstXI CCANNNNNNTGG 1 cut(s) 1110
Bsu15I ATCGAT 1 cut(s) 828
BsuI GTATCC 1 cut(s) 1025
BsuTUI ATCGAT 1 cut(s) 828
BtgZI GCGATG 1 cut(s) 315
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 3 cut(s) 834, 870, 882
Cac8I GCNNGC 1 cut(s) 774
Cfr13I GGNCC 1 cut(s) 698
ClaI ATCGAT 1 cut(s) 828
CseI GACGC 2 cut(s) 307, 692
Csp6I GTAC 3 cut(s) 80, 87, 415
CviAII CATG 5 cut(s) 227, 243, 516, 801, 853
CviJI RGCY 9 cut(s) 340, 507, 746, 772, 908, 915, 1010, 1061, 1131
CviKI_1 RGCY 9 cut(s) 340, 507, 746, 772, 908, 915, 1010, 1061, 1131
CviQI GTAC 3 cut(s) 80, 87, 415
DdeI CTNAG 2 cut(s) 822, 1132
DpnI GATC 8 cut(s) 18, 201, 240, 270, 768, 827, 831, 1068
DpnII GATC 8 cut(s) 16, 199, 238, 268, 766, 825, 829, 1066
DraI TTTAAA 1 cut(s) 133
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 924
EarI CTCTTC 1 cut(s) 924
Eco130I CCWWGG 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 698
Eco88I CYCGRG 1 cut(s) 334
Eco91I GGTNACC 1 cut(s) 814
EcoNI CCTNNNNNAGG 1 cut(s) 360
EcoO65I GGTNACC 1 cut(s) 814
EcoRII CCWGG 1 cut(s) 845
EcoT14I CCWWGG 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 205
FaeI CATG 5 cut(s) 230, 246, 519, 804, 856
FaqI GGGAC 1 cut(s) 522
FatI CATG 5 cut(s) 226, 242, 515, 800, 852
FbaI TGATCA 2 cut(s) 268, 766
Fnu4HI GCNGC 2 cut(s) 138, 997
Fsp4HI GCNGC 2 cut(s) 138, 997
FspBI CTAG 3 cut(s) 51, 177, 344
GluI GCNGC 2 cut(s) 138, 997
GsaI CCCAGC 1 cut(s) 912
GsuI CTGGAG 1 cut(s) 868
HapII CCGG 1 cut(s) 1054
HgaI GACGC 2 cut(s) 307, 692
Hin1II CATG 5 cut(s) 230, 246, 519, 804, 856
HindIII AAGCTT 1 cut(s) 1129
HinfI GANTC 7 cut(s) 43, 159, 173, 210, 352, 512, 1048
HpaII CCGG 1 cut(s) 1054
HphI GGTGA 1 cut(s) 15
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 7 cut(s) 16, 60, 215, 425, 511, 727, 961
Hpy188III TCNNGA 6 cut(s) 163, 454, 527, 539, 605, 1064
Hpy8I GTNNAC 1 cut(s) 87
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 3 cut(s) 113, 302, 617
HpyCH4III ACNGT 3 cut(s) 84, 555, 742
HpyCH4IV ACGT 1 cut(s) 1089
HpyCH4V TGCA 2 cut(s) 93, 1138
HpyF3I CTNAG 2 cut(s) 822, 1132
HpySE526I ACGT 1 cut(s) 1089
Hsp92II CATG 5 cut(s) 230, 246, 519, 804, 856
Ksp22I TGATCA 2 cut(s) 268, 766
Kzo9I GATC 8 cut(s) 16, 199, 238, 268, 766, 825, 829, 1066
LmnI GCTCC 4 cut(s) 849, 912, 1066, 1129
LpnPI CCDG 8 cut(s) 39, 456, 832, 859, 870, 894, 1067, 1092
Lsp1109I GCAGC 1 cut(s) 149
MaeI CTAG 3 cut(s) 51, 177, 344
MaeII ACGT 1 cut(s) 1089
MaeIII GTNAC 2 cut(s) 485, 814
MalI GATC 8 cut(s) 18, 201, 240, 270, 768, 827, 831, 1068
MboI GATC 8 cut(s) 16, 199, 238, 268, 766, 825, 829, 1066
MboII GAAGA 7 cut(s) 622, 641, 644, 647, 698, 941, 1107
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 3 cut(s) 255, 615, 955
MlyI GAGTC 1 cut(s) 1042
MnlI CCTC 5 cut(s) 271, 330, 513, 684, 720
MseI TTAA 4 cut(s) 132, 399, 954, 969
MslI CAYNNNNRTG 4 cut(s) 167, 726, 839, 1108
MspA1I CMGCKG 1 cut(s) 790
MspI CCGG 1 cut(s) 1054
MspR9I CCNGG 2 cut(s) 847, 1055
MvaI CCWGG 1 cut(s) 847
MvnI CGCG 2 cut(s) 703, 1046
NciI CCSGG 1 cut(s) 1055
NdeII GATC 8 cut(s) 16, 199, 238, 268, 766, 825, 829, 1066
NlaIII CATG 5 cut(s) 230, 246, 519, 804, 856
NlaIV GGNNCC 3 cut(s) 57, 476, 876
NspI RCATGY 1 cut(s) 856
OliI CACNNNNGTG 2 cut(s) 839, 1108
PaeR7I CTCGAG 1 cut(s) 334
PcsI WCGNNNNNNNCGW 1 cut(s) 495
PfeI GAWTC 6 cut(s) 43, 159, 173, 210, 352, 512
PflFI GACNNNGTC 2 cut(s) 10, 702
PflMI CCANNNNNTGG 1 cut(s) 884
PfoI TCCNGGA 2 cut(s) 845, 1053
PkrI GCNGC 2 cut(s) 139, 998
PleI GAGTC 1 cut(s) 1042
PpsI GAGTC 1 cut(s) 1042
Ppu21I YACGTR 1 cut(s) 1090
Psp6I CCWGG 1 cut(s) 845
PspEI GGTNACC 1 cut(s) 814
PspFI CCCAGC 1 cut(s) 908
PspGI CCWGG 1 cut(s) 845
PspN4I GGNNCC 3 cut(s) 57, 476, 876
PspPI GGNCC 1 cut(s) 698
PspXI VCTCGAGB 1 cut(s) 334
PsyI GACNNNGTC 2 cut(s) 10, 702
RsaI GTAC 3 cut(s) 81, 88, 416
RsaNI GTAC 3 cut(s) 80, 87, 415
RseI CAYNNNNRTG 4 cut(s) 167, 726, 839, 1108
SaqAI TTAA 4 cut(s) 132, 399, 954, 969
SatI GCNGC 2 cut(s) 138, 997
Sau3AI GATC 8 cut(s) 16, 199, 238, 268, 766, 825, 829, 1066
Sau96I GGNCC 1 cut(s) 698
SchI GAGTC 1 cut(s) 1042
ScrFI CCNGG 2 cut(s) 847, 1055
SduI GDGCHC 1 cut(s) 477
SfcI CTRYAG 1 cut(s) 684
Sfr274I CTCGAG 1 cut(s) 334
SinI GGWCC 1 cut(s) 698
SlaI CTCGAG 1 cut(s) 334
SmiMI CAYNNNNRTG 4 cut(s) 167, 726, 839, 1108
SmlI CTYRAG 2 cut(s) 334, 603
SmoI CTYRAG 2 cut(s) 334, 603
Sse9I AATT 3 cut(s) 255, 615, 955
SsiI CCGC 7 cut(s) 701, 776, 790, 839, 994, 997, 1044
SspMI CTAG 3 cut(s) 51, 177, 344
StyD4I CCNGG 2 cut(s) 845, 1053
StyI CCWWGG 1 cut(s) 205
TaaI ACNGT 3 cut(s) 84, 555, 742
TaiI ACGT 1 cut(s) 1092
TaqI TCGA 5 cut(s) 276, 335, 408, 828, 897
TasI AATT 3 cut(s) 255, 615, 955
TatI WGTACW 1 cut(s) 86
TauI GCSGC 1 cut(s) 999
TfiI GAWTC 6 cut(s) 43, 159, 173, 210, 352, 512
Tru1I TTAA 4 cut(s) 132, 399, 954, 969
Tru9I TTAA 4 cut(s) 132, 399, 954, 969
TscAI CASTG 3 cut(s) 841, 870, 889
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 5 cut(s) 206, 473, 504, 548, 918
TspGWI ACGGA 1 cut(s) 1044
TspRI CASTG 3 cut(s) 841, 870, 889
Tth111I GACNNNGTC 2 cut(s) 10, 702
Van91I CCANNNNNTGG 1 cut(s) 884
VpaK11BI GGWCC 1 cut(s) 698
XagI CCTNNNNNAGG 1 cut(s) 360
XceI RCATGY 1 cut(s) 856
XhoI CTCGAG 1 cut(s) 334
XspI CTAG 3 cut(s) 51, 177, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.